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Volumn 21, Issue 2, 2015, Pages 1-12

Atomistic insights into the lung cancer-associated L755P mutation in HER2 resistance to lapatinib: a molecular dynamics study

Author keywords

Drug resistance; HER2; Lung cancer; MD simulation; MM GBSA

Indexed keywords

EPIDERMAL GROWTH FACTOR RECEPTOR 2; GLYCINE; LAPATINIB; ANTINEOPLASTIC AGENT; PROTEIN BINDING; PROTEIN KINASE INHIBITOR; QUINAZOLINE DERIVATIVE;

EID: 84921819967     PISSN: 16102940     EISSN: 09485023     Source Type: Journal    
DOI: 10.1007/s00894-015-2580-x     Document Type: Article
Times cited : (11)

References (51)
  • 1
    • 33749072019 scopus 로고    scopus 로고
    • Nuclear signaling by receptor tyrosine kinases: the first robin of spring
    • COI: 1:CAS:528:DC%2BD28XhtFSitr%2FN
    • Schlessinger J, Lemmon MA (2006) Nuclear signaling by receptor tyrosine kinases: the first robin of spring. Cell 127:45–48
    • (2006) Cell , vol.127 , pp. 45-48
    • Schlessinger, J.1    Lemmon, M.A.2
  • 2
    • 84890041471 scopus 로고    scopus 로고
    • The ErbB/HER family of protein-tyrosine kinases and cancer
    • COI: 1:CAS:528:DC%2BC2cXksVyqsA%3D%3D
    • Roskoski R Jr (2014) The ErbB/HER family of protein-tyrosine kinases and cancer. Pharmacol Res 79:34–74
    • (2014) Pharmacol Res , vol.79 , pp. 34-74
    • Roskoski, R.1
  • 3
    • 55449102296 scopus 로고    scopus 로고
    • All EGF(ErbB) receptors have performed homo- and heterodimeric structures in living cells
    • COI: 1:CAS:528:DC%2BD1cXhtlGltrnN
    • Tao R-H, Maruyama IN (2008) All EGF(ErbB) receptors have performed homo- and heterodimeric structures in living cells. J Cell Sci 121:3207–3217
    • (2008) J Cell Sci , vol.121 , pp. 3207-3217
    • Tao, R.-H.1    Maruyama, I.N.2
  • 4
    • 23844471971 scopus 로고    scopus 로고
    • Epidermal growth factor receptor dimerization and activation require ligand-induced conformational changes in the dimer interface
    • COI: 1:CAS:528:DC%2BD2MXpsFKhtr4%3D
    • Dawson JP, Berger MB, Lin CC, Schlessinger J, Lemmon MA, Ferguson KM (2005) Epidermal growth factor receptor dimerization and activation require ligand-induced conformational changes in the dimer interface. Mol Cell Biol 25:7734–7742
    • (2005) Mol Cell Biol , vol.25 , pp. 7734-7742
    • Dawson, J.P.1    Berger, M.B.2    Lin, C.C.3    Schlessinger, J.4    Lemmon, M.A.5    Ferguson, K.M.6
  • 6
    • 33744493376 scopus 로고    scopus 로고
    • Targeting tyrosine kinases in cancer: the second wave
    • COI: 1:CAS:528:DC%2BD28XkvVOiur0%3D
    • Baselga J (2006) Targeting tyrosine kinases in cancer: the second wave. Science 312:1175–1178
    • (2006) Science , vol.312 , pp. 1175-1178
    • Baselga, J.1
  • 8
    • 77954157136 scopus 로고    scopus 로고
    • Use of erlotinib or gefitinib as initial therapy in advanced NSCLC
    • Oxnard GR, Miller VA (2010) Use of erlotinib or gefitinib as initial therapy in advanced NSCLC. Oncology 24:392–399
    • (2010) Oncology , vol.24 , pp. 392-399
    • Oxnard, G.R.1    Miller, V.A.2
  • 9
    • 77649162889 scopus 로고    scopus 로고
    • Lapatinib, a dual EGFR and HER2 kinase inhibitor, selectively inhibits HER2-amplified human gastric cancer cell and is synergistic with trastuzumab in vitro and in vivo
    • COI: 1:CAS:528:DC%2BC3cXisFSis7k%3D
    • Wainberg ZA, Anghel A, Desai AJ, Ayala R, Luo T, Safran B, Fejzo MS, Hecht R, Slamon DJ, Finn RS (2010) Lapatinib, a dual EGFR and HER2 kinase inhibitor, selectively inhibits HER2-amplified human gastric cancer cell and is synergistic with trastuzumab in vitro and in vivo. Clin Cancer Res 16:1509–1519
    • (2010) Clin Cancer Res , vol.16 , pp. 1509-1519
    • Wainberg, Z.A.1    Anghel, A.2    Desai, A.J.3    Ayala, R.4    Luo, T.5    Safran, B.6    Fejzo, M.S.7    Hecht, R.8    Slamon, D.J.9    Finn, R.S.10
  • 10
    • 0035800507 scopus 로고    scopus 로고
    • Clinical resistance to STI-571 cancer therapy caused by BCR-ABL gene mutation or amplification
    • COI: 1:CAS:528:DC%2BD3MXlvVKrsbs%3D
    • Gorre ME, Mohammed M, Ellwood K, Hsu N, Paguette R, Rao PN, Sawyers CL (2001) Clinical resistance to STI-571 cancer therapy caused by BCR-ABL gene mutation or amplification. Science 293:876–880
    • (2001) Science , vol.293 , pp. 876-880
    • Gorre, M.E.1    Mohammed, M.2    Ellwood, K.3    Hsu, N.4    Paguette, R.5    Rao, P.N.6    Sawyers, C.L.7
  • 11
    • 84861977785 scopus 로고    scopus 로고
    • T790M and acquired resistance of EGFR TKI: a literature review of clinical reports
    • COI: 1:CAS:528:DC%2BC3MXmtl2nu7c%3D
    • Ma C, Wei S, Song Y (2011) T790M and acquired resistance of EGFR TKI: a literature review of clinical reports. J Thorac Dis 3:10–18
    • (2011) J Thorac Dis , vol.3 , pp. 10-18
    • Ma, C.1    Wei, S.2    Song, Y.3
  • 12
    • 54049122600 scopus 로고    scopus 로고
    • Comparison of the EGFR resistance mutation profiles generated by EGFR-targeted tyrosine kinase inhibitors and the impact of drug combinations
    • Avizienyte E, Ward RA, Garner AP (2008) Comparison of the EGFR resistance mutation profiles generated by EGFR-targeted tyrosine kinase inhibitors and the impact of drug combinations. Biochem J 145:197–206
    • (2008) Biochem J , vol.145 , pp. 197-206
    • Avizienyte, E.1    Ward, R.A.2    Garner, A.P.3
  • 14
    • 58149333768 scopus 로고    scopus 로고
    • Acquired resistance to epidermal growth factor receptor kinase inhibitors associated with a novel T854A mutation in a patient with EGFR-mutant lung adenocarcinoma
    • COI: 1:CAS:528:DC%2BD1cXhtlylur3O
    • Bean J, Riely GJ, Balak M, Marks JL, Ladanyi M, Miller VA, Pao W (2008) Acquired resistance to epidermal growth factor receptor kinase inhibitors associated with a novel T854A mutation in a patient with EGFR-mutant lung adenocarcinoma. Clin Cancer Res 14:7519–7525
    • (2008) Clin Cancer Res , vol.14 , pp. 7519-7525
    • Bean, J.1    Riely, G.J.2    Balak, M.3    Marks, J.L.4    Ladanyi, M.5    Miller, V.A.6    Pao, W.7
  • 19
    • 0033810049 scopus 로고    scopus 로고
    • Modeling loops in protein structures
    • COI: 1:CAS:528:DC%2BD3cXntFamsL8%3D
    • Fiser A, Do RK, Sali A (2000) Modeling loops in protein structures. Protein Sci 9:1753–1773
    • (2000) Protein Sci , vol.9 , pp. 1753-1773
    • Fiser, A.1    Do, R.K.2    Sali, A.3
  • 22
    • 84866709839 scopus 로고    scopus 로고
    • Insights into the role of magnesium traid in myo-inositol monophosphatase: metal mechanism, substrate binding, and lithium therapy
    • COI: 1:CAS:528:DC%2BC38XhtFOrurnF
    • Lu S, Huang W, Li X, Huang Z, Liu X, Chen Y, Shi T, Zhang J (2012) Insights into the role of magnesium traid in myo-inositol monophosphatase: metal mechanism, substrate binding, and lithium therapy. J Chem Inf Model 52:2398–2409
    • (2012) J Chem Inf Model , vol.52 , pp. 2398-2409
    • Lu, S.1    Huang, W.2    Li, X.3    Huang, Z.4    Liu, X.5    Chen, Y.6    Shi, T.7    Zhang, J.8
  • 26
    • 2942532422 scopus 로고    scopus 로고
    • Development and testing of a general amber force field
    • COI: 1:CAS:528:DC%2BD2cXksFakurc%3D
    • Wang J, Wolf RM, Caldwell JW, Kollman PA, Case DA (2004) Development and testing of a general amber force field. J Comput Chem 25:1157–1174
    • (2004) J Comput Chem , vol.25 , pp. 1157-1174
    • Wang, J.1    Wolf, R.M.2    Caldwell, J.W.3    Kollman, P.A.4    Case, D.A.5
  • 27
  • 28
    • 33846823909 scopus 로고
    • Particle mesh Ewald: an N log(N) method for Ewald sums in large systems
    • COI: 1:CAS:528:DyaK3sXks1Ohsr0%3D
    • Darden T, York D, Pedersen L (1993) Particle mesh Ewald: an N log(N) method for Ewald sums in large systems. J Chem Phys 98:10089–10092
    • (1993) J Chem Phys , vol.98 , pp. 10089-10092
    • Darden, T.1    York, D.2    Pedersen, L.3
  • 29
    • 33646940952 scopus 로고
    • Numerical integration of the cartesian equations of motion of a system with constraints: molecular dynamics of n-alkanes
    • COI: 1:CAS:528:DyaE2sXktVGhsL4%3D
    • Ryckaert JP, Ciccotti G, Berendsen HJC (1977) Numerical integration of the cartesian equations of motion of a system with constraints: molecular dynamics of n-alkanes. J Comput Phys 23:327–341
    • (1977) J Comput Phys , vol.23 , pp. 327-341
    • Ryckaert, J.P.1    Ciccotti, G.2    Berendsen, H.J.C.3
  • 30
    • 0242509772 scopus 로고    scopus 로고
    • Self-guided Langevin dynamics simulation method
    • COI: 1:CAS:528:DC%2BD3sXovVKgtrk%3D
    • Wu X, Brooks BR (2003) Self-guided Langevin dynamics simulation method. Chem Phys Lett 381:512–518
    • (2003) Chem Phys Lett , vol.381 , pp. 512-518
    • Wu, X.1    Brooks, B.R.2
  • 31
    • 84859166733 scopus 로고    scopus 로고
    • A water-based mechanism of specificity and resistance for lapatinib with ErbB family kinases
    • COI: 1:CAS:528:DC%2BC38XisFalsbc%3D
    • Huang Y, Rizzo RC (2012) A water-based mechanism of specificity and resistance for lapatinib with ErbB family kinases. Biochemistry 51:2390–2406
    • (2012) Biochemistry , vol.51 , pp. 2390-2406
    • Huang, Y.1    Rizzo, R.C.2
  • 32
    • 84885154741 scopus 로고    scopus 로고
    • In silico design: extended molecular dynamic simulations of a new series of dually acting inhibitors against EGFR and HER2
    • COI: 1:CAS:528:DC%2BC3sXhtlyit77E
    • Ahmed M, Sadek MM, Abouzid KA, Wang F (2013) In silico design: extended molecular dynamic simulations of a new series of dually acting inhibitors against EGFR and HER2. J Mol Graph Model 44:220–231
    • (2013) J Mol Graph Model , vol.44 , pp. 220-231
    • Ahmed, M.1    Sadek, M.M.2    Abouzid, K.A.3    Wang, F.4
  • 33
    • 84904438047 scopus 로고    scopus 로고
    • Assessing the performance of MM/PBSA and MM/GBSA methods. 4. Accuracies of MM/PBSA and MM/GBSA methodologies evaluated by various simulation protocols using PDBbind data set
    • COI: 1:CAS:528:DC%2BC2cXhtFSltrzI
    • Sun H, Li Y, Tian S, Xu L, Hou T (2014) Assessing the performance of MM/PBSA and MM/GBSA methods. 4. Accuracies of MM/PBSA and MM/GBSA methodologies evaluated by various simulation protocols using PDBbind data set. Phys Chem Chem Phys 16:16719–16729
    • (2014) Phys Chem Chem Phys , vol.16 , pp. 16719-16729
    • Sun, H.1    Li, Y.2    Tian, S.3    Xu, L.4    Hou, T.5
  • 34
    • 84904104510 scopus 로고    scopus 로고
    • Ligand induced change of β2 adrenergic receptor from active to inactive conformation and its implication for the closed/open state of the water channel: insight from molecular dynamics simulation, free energy calculation and Markov state model analysis
    • COI: 1:CAS:528:DC%2BC2cXhtVCitr%2FL
    • Bai Q, Pérez-Sánchez H, Zhang Y, Shao Y, Shi D, Liu H, Yao Y (2014) Ligand induced change of β2 adrenergic receptor from active to inactive conformation and its implication for the closed/open state of the water channel: insight from molecular dynamics simulation, free energy calculation and Markov state model analysis. Phys Chem Chem Phys 16:15874–15885
    • (2014) Phys Chem Chem Phys , vol.16 , pp. 15874-15885
    • Bai, Q.1    Pérez-Sánchez, H.2    Zhang, Y.3    Shao, Y.4    Shi, D.5    Liu, H.6    Yao, Y.7
  • 35
    • 36649006642 scopus 로고    scopus 로고
    • Clustering molecular dynamics trajectories: 1. Characterizing the performance of different clustering algorithms
    • COI: 1:CAS:528:DC%2BD2sXhtFaqsLzE
    • Shao J, Tanner SW, Thompson N, Cheatham TEIII (2007) Clustering molecular dynamics trajectories: 1. Characterizing the performance of different clustering algorithms. J Chem Theory Comput 3:2312–2334
    • (2007) J Chem Theory Comput , vol.3 , pp. 2312-2334
    • Shao, J.1    Tanner, S.W.2    Thompson, N.3    Cheatham, T.E.I.I.I.4
  • 36
    • 0037168602 scopus 로고    scopus 로고
    • Ten-nanosecond molecular dynamics simulation of the motions of the horse liver alcohol dehydrogenase•PhCH2O- complex
    • COI: 1:CAS:528:DC%2BD3sXhvVyqsQ%3D%3D
    • Luo J, Bruice T (2002) Ten-nanosecond molecular dynamics simulation of the motions of the horse liver alcohol dehydrogenase•PhCH2O- complex. Proc Natl Acad Sci USA 99:16597–16600
    • (2002) Proc Natl Acad Sci USA , vol.99 , pp. 16597-16600
    • Luo, J.1    Bruice, T.2
  • 38
    • 84875747743 scopus 로고    scopus 로고
    • αC helix displacement as a general approach for allosteric modulator of protein kinases
    • COI: 1:CAS:528:DC%2BC38XhvVektrzE
    • Palmieri L, Rastelli G (2013) αC helix displacement as a general approach for allosteric modulator of protein kinases. Drug Discov Today 18:407–414
    • (2013) Drug Discov Today , vol.18 , pp. 407-414
    • Palmieri, L.1    Rastelli, G.2
  • 39
    • 84907979005 scopus 로고    scopus 로고
    • Harnessing allostery: a novel approach to drug discovery
    • COI: 1:CAS:528:DC%2BC2cXhslalu7rO
    • Lu S, Li S, Zhang J (2014) Harnessing allostery: a novel approach to drug discovery. Med Res Rev 34:1242–1285
    • (2014) Med Res Rev , vol.34 , pp. 1242-1285
    • Lu, S.1    Li, S.2    Zhang, J.3
  • 40
    • 0037469146 scopus 로고    scopus 로고
    • Activation loop phosphorylation and catalysis in protein kinases: is there functional evidence for the autoinhibitor model?
    • COI: 1:CAS:528:DC%2BD38XpvVansbw%3D
    • Adams JA (2003) Activation loop phosphorylation and catalysis in protein kinases: is there functional evidence for the autoinhibitor model? Biochemistry 42:601–607
    • (2003) Biochemistry , vol.42 , pp. 601-607
    • Adams, J.A.1
  • 41
    • 4444353636 scopus 로고    scopus 로고
    • Regulation of protein kinases
    • COI: 1:CAS:528:DC%2BD2cXnvFyhsro%3D
    • Nolen B, Taylor S, Ghosh G (2004) Regulation of protein kinases. Mol Cell 15:661–675
    • (2004) Mol Cell , vol.15 , pp. 661-675
    • Nolen, B.1    Taylor, S.2    Ghosh, G.3
  • 42
    • 79960910613 scopus 로고    scopus 로고
    • Mechanism of kinase inactivation and nonbinding of FRATide to GSK3β due to K85M mutation: molecular dynamics simulation and normal mode analysis
    • COI: 1:CAS:528:DC%2BC3MXpt1Gju7c%3D
    • Lu S, Jiang Y, Lv J, Zou J, Wu T (2011) Mechanism of kinase inactivation and nonbinding of FRATide to GSK3β due to K85M mutation: molecular dynamics simulation and normal mode analysis. Biopolymers 95:669–681
    • (2011) Biopolymers , vol.95 , pp. 669-681
    • Lu, S.1    Jiang, Y.2    Lv, J.3    Zou, J.4    Wu, T.5
  • 43
    • 60749137451 scopus 로고    scopus 로고
    • Beyond chemotherapy: targeted therapies in ovarian cancer
    • COI: 1:CAS:528:DC%2BD1MXit1ans74%3D
    • Yap TA, Carden CP, Kaye SB (2009) Beyond chemotherapy: targeted therapies in ovarian cancer. Nat Rev Cancer 9:167–181
    • (2009) Nat Rev Cancer , vol.9 , pp. 167-181
    • Yap, T.A.1    Carden, C.P.2    Kaye, S.B.3
  • 45
    • 84905503390 scopus 로고    scopus 로고
    • P-loop conformation governed crizotinib resistance in G2032R-mutated ROS1 tyrosine kinase: clues from free energy landscape
    • Sun H, Li Y, Tian S, Wang J, Hou T (2014) P-loop conformation governed crizotinib resistance in G2032R-mutated ROS1 tyrosine kinase: clues from free energy landscape. PLoS Comput Biol 10:e1003729
    • (2014) PLoS Comput Biol , vol.10
    • Sun, H.1    Li, Y.2    Tian, S.3    Wang, J.4    Hou, T.5
  • 46
    • 84905322938 scopus 로고    scopus 로고
    • Dual-inhibitors of STAT5 and STAT3: studies from molecular docking and molecular dynamics simulations
    • Shao S, Yu R, Yu Y, Li Y (2014) Dual-inhibitors of STAT5 and STAT3: studies from molecular docking and molecular dynamics simulations. J Mol Model 20:2399
    • (2014) J Mol Model , vol.20 , pp. 2399
    • Shao, S.1    Yu, R.2    Yu, Y.3    Li, Y.4
  • 47
    • 84908644902 scopus 로고    scopus 로고
    • Recent computational advances in the identification of allosteric sites in proteins
    • COI: 1:CAS:528:DC%2BC2cXhtlCis77F
    • Lu S, Huang W, Zhang J (2014) Recent computational advances in the identification of allosteric sites in proteins. Drug Discov Today 19:1595–1600
    • (2014) Drug Discov Today , vol.19 , pp. 1595-1600
    • Lu, S.1    Huang, W.2    Zhang, J.3
  • 48
    • 84907587688 scopus 로고    scopus 로고
    • Molecular simulation-based structural prediction of protein complexes in mass spectrometry: the human insulin dimer
    • Li J, Rossetti G, Dreyer J, Raugei S, Ippolitti E, Lüscher B, Carloni P (2014) Molecular simulation-based structural prediction of protein complexes in mass spectrometry: the human insulin dimer. PLoS Comput Biol 10:e1003838
    • (2014) PLoS Comput Biol , vol.10
    • Li, J.1    Rossetti, G.2    Dreyer, J.3    Raugei, S.4    Ippolitti, E.5    Lüscher, B.6    Carloni, P.7
  • 49
    • 84876907320 scopus 로고    scopus 로고
    • Phosphorylation of the retinoic acid receptor alpha induces a mechanical allosteric regulation and changes in internal dynamics
    • COI: 1:CAS:528:DC%2BC3sXntFarurs%3D
    • Chebaro Y, Amal I, Rochel N, Rochette-Egly C, Stote RH, Dejaegere A (2013) Phosphorylation of the retinoic acid receptor alpha induces a mechanical allosteric regulation and changes in internal dynamics. PLoS Comput Biol 9:e1003012
    • (2013) PLoS Comput Biol , vol.9
    • Chebaro, Y.1    Amal, I.2    Rochel, N.3    Rochette-Egly, C.4    Stote, R.H.5    Dejaegere, A.6
  • 50
    • 84874521821 scopus 로고    scopus 로고
    • Molecular dynamics reveal binding mode of glutathionylspermidine by trypanothione synthetase
    • COI: 1:CAS:528:DC%2BC3sXjslyksLk%3D
    • Koch O, Cappel D, Nocker M, Jäger T, Flohé L, Sotriffer CA, Selzer PM (2013) Molecular dynamics reveal binding mode of glutathionylspermidine by trypanothione synthetase. PLoS One 8:e56788
    • (2013) PLoS One , vol.8 , pp. e56788
    • Koch, O.1    Cappel, D.2    Nocker, M.3    Jäger, T.4    Flohé, L.5    Sotriffer, C.A.6    Selzer, P.M.7
  • 51
    • 1842479952 scopus 로고    scopus 로고
    • Exploring protein native states and large-scale conformational changes with a modified generalized Born model
    • Onufriev A, Bashford D, Case DA (2004) Exploring protein native states and large-scale conformational changes with a modified generalized Born model. Proteins 55:383–394
    • (2004) Proteins , vol.55 , pp. 383-394
    • Onufriev, A.1    Bashford, D.2    Case, D.A.3


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