-
1
-
-
84883296060
-
Biophysical basis of the promiscuous binding of B-cell lymphoma protein 2 apoptotic repressor to BH3 ligands
-
Bhat V., et al. Biophysical basis of the promiscuous binding of B-cell lymphoma protein 2 apoptotic repressor to BH3 ligands. J. Mol. Recognit. 2013, 26:501-513.
-
(2013)
J. Mol. Recognit.
, vol.26
, pp. 501-513
-
-
Bhat, V.1
-
2
-
-
84880052696
-
Enzymatic detoxication, conformational selection, and the role of molten globule active sites
-
Honaker M.T., et al. Enzymatic detoxication, conformational selection, and the role of molten globule active sites. J. Biol. Chem. 2013, 288:18599-18611.
-
(2013)
J. Biol. Chem.
, vol.288
, pp. 18599-18611
-
-
Honaker, M.T.1
-
3
-
-
84893809985
-
A promiscuous intermediate underlies the evolution of LEAFY DNA binding specificity
-
Sayou C., et al. A promiscuous intermediate underlies the evolution of LEAFY DNA binding specificity. Science 2014, 343:645-648.
-
(2014)
Science
, vol.343
, pp. 645-648
-
-
Sayou, C.1
-
4
-
-
0037396292
-
Enzymes with extra talents: moonlighting functions and catalytic promiscuity
-
Copley S.D. Enzymes with extra talents: moonlighting functions and catalytic promiscuity. Curr. Opin. Chem. Biol. 2003, 7:265-272.
-
(2003)
Curr. Opin. Chem. Biol.
, vol.7
, pp. 265-272
-
-
Copley, S.D.1
-
6
-
-
34247580788
-
Molecular mechanism of phase I and phase II drug-metabolizing enzymes: implications for detoxification
-
Iyanagi T. Molecular mechanism of phase I and phase II drug-metabolizing enzymes: implications for detoxification. Int. Rev. Cytol. 2007, 260:35-112.
-
(2007)
Int. Rev. Cytol.
, vol.260
, pp. 35-112
-
-
Iyanagi, T.1
-
7
-
-
51649110669
-
A compromise required by gene sharing enables survival: implications for evolution of new enzyme activities
-
Yu McLoughlin S., Copley S.D. A compromise required by gene sharing enables survival: implications for evolution of new enzyme activities. Proc. Natl. Acad. Sci. U.S.A. 2008, 105:13497-13502.
-
(2008)
Proc. Natl. Acad. Sci. U.S.A.
, vol.105
, pp. 13497-13502
-
-
Yu McLoughlin, S.1
Copley, S.D.2
-
8
-
-
84922359242
-
Differential effects of a mutation on the normal and promiscuous activities of orthologs: implications for natural and directed evolution
-
Published online September 21, 2014
-
Khanal A., et al. Differential effects of a mutation on the normal and promiscuous activities of orthologs: implications for natural and directed evolution. Mol. Biol. Evol. 2014, Published online September 21, 2014. 10.1093/molbev/msu271.
-
(2014)
Mol. Biol. Evol.
-
-
Khanal, A.1
-
9
-
-
33846023053
-
Genome-wide analysis of substrate specificities of the Escherichia coli haloacid dehalogenase-like phosphatase family
-
Kuznetsova E., et al. Genome-wide analysis of substrate specificities of the Escherichia coli haloacid dehalogenase-like phosphatase family. J. Biol. Chem. 2006, 281:36149-36161.
-
(2006)
J. Biol. Chem.
, vol.281
, pp. 36149-36161
-
-
Kuznetsova, E.1
-
10
-
-
0141727583
-
Role of 2-phosphoglycolate phosphatase of Escherichia coli in metabolism of the 2-phosphoglycolate formed in DNA repair
-
Teresa Pellicer M., et al. Role of 2-phosphoglycolate phosphatase of Escherichia coli in metabolism of the 2-phosphoglycolate formed in DNA repair. J. Bacteriol. 2003, 185:5815-5821.
-
(2003)
J. Bacteriol.
, vol.185
, pp. 5815-5821
-
-
Teresa Pellicer, M.1
-
11
-
-
0033528659
-
Unexpected divergence of enzyme function and sequence: "N-acylamino acid racemase" is o-succinylbenzoate synthase
-
Palmer D.R., et al. Unexpected divergence of enzyme function and sequence: "N-acylamino acid racemase" is o-succinylbenzoate synthase. Biochemistry 1999, 38:4252-4258.
-
(1999)
Biochemistry
, vol.38
, pp. 4252-4258
-
-
Palmer, D.R.1
-
12
-
-
2442612271
-
Evolution of enzymatic activity in the enolase superfamily: structural studies of the promiscuous o-succinylbenzoate synthase from Amycolatopsis
-
Thoden J.B., et al. Evolution of enzymatic activity in the enolase superfamily: structural studies of the promiscuous o-succinylbenzoate synthase from Amycolatopsis. Biochemistry 2004, 43:5716-5727.
-
(2004)
Biochemistry
, vol.43
, pp. 5716-5727
-
-
Thoden, J.B.1
-
13
-
-
33645677238
-
Evolution of enzymatic activities in the enolase superfamily: N-succinylamino acid racemase and a new pathway for the irreversible conversion of D- to L-amino acids
-
Sakai A., et al. Evolution of enzymatic activities in the enolase superfamily: N-succinylamino acid racemase and a new pathway for the irreversible conversion of D- to L-amino acids. Biochemistry 2006, 45:4455-4462.
-
(2006)
Biochemistry
, vol.45
, pp. 4455-4462
-
-
Sakai, A.1
-
14
-
-
78649857195
-
Three serendipitous pathways in E. coli can bypass a block in pyridoxal-5'-phosphate synthesis
-
Kim J., et al. Three serendipitous pathways in E. coli can bypass a block in pyridoxal-5'-phosphate synthesis. Mol. Syst. Biol. 2010, 6:436.
-
(2010)
Mol. Syst. Biol.
, vol.6
, pp. 436
-
-
Kim, J.1
-
15
-
-
0017272554
-
Enzyme recruitment in evolution of new function
-
Jensen R.A. Enzyme recruitment in evolution of new function. Annu. Rev. Microbiol. 1976, 30:409-425.
-
(1976)
Annu. Rev. Microbiol.
, vol.30
, pp. 409-425
-
-
Jensen, R.A.1
-
16
-
-
0015980083
-
On earlier states of the biochemical system
-
Ycas M. On earlier states of the biochemical system. J. Theor. Biol. 1974, 44:145-160.
-
(1974)
J. Theor. Biol.
, vol.44
, pp. 145-160
-
-
Ycas, M.1
-
17
-
-
9744279773
-
Divergent evolution in the enolase superfamily: the interplay of mechanism and specificity
-
Gerlt J.A., et al. Divergent evolution in the enolase superfamily: the interplay of mechanism and specificity. Arch. Biochem. Biophys. 2005, 433:59-70.
-
(2005)
Arch. Biochem. Biophys.
, vol.433
, pp. 59-70
-
-
Gerlt, J.A.1
-
18
-
-
33750689867
-
Diversification of function in the haloacid dehalogenase enzyme superfamily: the role of the cap domain in hydrolytic phosphoruscarbon bond cleavage
-
Lahiri S.D., et al. Diversification of function in the haloacid dehalogenase enzyme superfamily: the role of the cap domain in hydrolytic phosphoruscarbon bond cleavage. Bioorg. Chem. 2006, 34:394-409.
-
(2006)
Bioorg. Chem.
, vol.34
, pp. 394-409
-
-
Lahiri, S.D.1
-
19
-
-
17844384785
-
Structural and catalytic diversity within the amidohydrolase superfamily
-
Seibert C.M., Raushel F.M. Structural and catalytic diversity within the amidohydrolase superfamily. Biochemistry 2005, 44:6383-6391.
-
(2005)
Biochemistry
, vol.44
, pp. 6383-6391
-
-
Seibert, C.M.1
Raushel, F.M.2
-
20
-
-
25444456889
-
Shared promiscuous activities and evolutionary features in various members of the amidohydrolase superfamily
-
Roodveldt C., Tawfik D.S. Shared promiscuous activities and evolutionary features in various members of the amidohydrolase superfamily. Biochemistry 2005, 44:12728-12736.
-
(2005)
Biochemistry
, vol.44
, pp. 12728-12736
-
-
Roodveldt, C.1
Tawfik, D.S.2
-
21
-
-
84883249614
-
Substrate ambiguous enzymes within the Escherichia coli proteome offer different evolutionary solutions to the same problem
-
Yip S.H., Matsumura I. Substrate ambiguous enzymes within the Escherichia coli proteome offer different evolutionary solutions to the same problem. Mol. Biol. Evol. 2013, 30:2001-2012.
-
(2013)
Mol. Biol. Evol.
, vol.30
, pp. 2001-2012
-
-
Yip, S.H.1
Matsumura, I.2
-
22
-
-
0011255058
-
Regulation of the threonine operon: tandem threonine and isoleucine codons in the control region and translational control of transcription termination
-
Gardner J.F. Regulation of the threonine operon: tandem threonine and isoleucine codons in the control region and translational control of transcription termination. Proc. Natl. Acad. Sci. U.S.A. 1979, 76:1706-1710.
-
(1979)
Proc. Natl. Acad. Sci. U.S.A.
, vol.76
, pp. 1706-1710
-
-
Gardner, J.F.1
-
23
-
-
70349974741
-
Efficient catalytic promiscuity for chemically distinct reactions
-
Babtie A.C., et al. Efficient catalytic promiscuity for chemically distinct reactions. Angew. Chem. Int. Ed. Engl. 2009, 48:3692-3694.
-
(2009)
Angew. Chem. Int. Ed. Engl.
, vol.48
, pp. 3692-3694
-
-
Babtie, A.C.1
-
24
-
-
77953880857
-
Valine 375 and phenylalanine 109 confer affinity and specificity for pyruvate as donor substrate in acetohydroxy acid synthase isozyme II from Escherichia coli
-
Steinmetz A., et al. Valine 375 and phenylalanine 109 confer affinity and specificity for pyruvate as donor substrate in acetohydroxy acid synthase isozyme II from Escherichia coli. Biochemistry 2010, 49:5188-5199.
-
(2010)
Biochemistry
, vol.49
, pp. 5188-5199
-
-
Steinmetz, A.1
-
25
-
-
84855813501
-
+-dependent isocitrate dehydrogenase from the ethanologenic bacterium Zymomonas mobilis
-
+-dependent isocitrate dehydrogenase from the ethanologenic bacterium Zymomonas mobilis. FEMS Microbiol. Lett. 2012, 327:134-141.
-
(2012)
FEMS Microbiol. Lett.
, vol.327
, pp. 134-141
-
-
Wang, P.1
-
26
-
-
77950792003
-
Diffusion, crowding and protein stability in a dynamic molecular model of the bacterial cytoplasm
-
McGuffee S.R., Elcock A.H. Diffusion, crowding and protein stability in a dynamic molecular model of the bacterial cytoplasm. PLoS Comput. Biol. 2010, 6:e1000694.
-
(2010)
PLoS Comput. Biol.
, vol.6
, pp. e1000694
-
-
McGuffee, S.R.1
Elcock, A.H.2
-
27
-
-
78349292832
-
Avidin. 1. The use of (14-C)biotin for kinetic studies and for assay
-
Green N.M. Avidin. 1. The use of (14-C)biotin for kinetic studies and for assay. Biochem. J. 1963, 89:585-591.
-
(1963)
Biochem. J.
, vol.89
, pp. 585-591
-
-
Green, N.M.1
-
28
-
-
0033621503
-
The X-ray three-dimensional structure of avidin
-
Rosano C., et al. The X-ray three-dimensional structure of avidin. Biomol. Eng. 1999, 16:5-12.
-
(1999)
Biomol. Eng.
, vol.16
, pp. 5-12
-
-
Rosano, C.1
-
29
-
-
80155152647
-
Aromatic side-chain cluster of biotin binding site of avidin allows circular dichroism spectroscopic investigation of its ligand binding properties
-
Zsila F. Aromatic side-chain cluster of biotin binding site of avidin allows circular dichroism spectroscopic investigation of its ligand binding properties. J. Mol. Recognit. 2011, 24:995-1006.
-
(2011)
J. Mol. Recognit.
, vol.24
, pp. 995-1006
-
-
Zsila, F.1
-
30
-
-
33644754088
-
Recognition of oxidatively modified bases within the biotin-binding site of avidin
-
Conners R., et al. Recognition of oxidatively modified bases within the biotin-binding site of avidin. J. Mol. Biol. 2006, 357:263-274.
-
(2006)
J. Mol. Biol.
, vol.357
, pp. 263-274
-
-
Conners, R.1
-
31
-
-
33846467150
-
A systems approach to measuring the binding energy landscapes of transcription factors
-
Maerkl S.J., Quake S.R. A systems approach to measuring the binding energy landscapes of transcription factors. Science 2007, 315:233-237.
-
(2007)
Science
, vol.315
, pp. 233-237
-
-
Maerkl, S.J.1
Quake, S.R.2
-
32
-
-
34547633677
-
Genome-wide profiles of STAT1 DNA association using chromatin immunoprecipitation and massively parallel sequencing
-
Robertson G., et al. Genome-wide profiles of STAT1 DNA association using chromatin immunoprecipitation and massively parallel sequencing. Nat. Methods 2007, 4:651-657.
-
(2007)
Nat. Methods
, vol.4
, pp. 651-657
-
-
Robertson, G.1
-
33
-
-
84899528770
-
Target competition: transcription factors enter the limelight
-
Karreth F.A., et al. Target competition: transcription factors enter the limelight. Genome Biol. 2014, 15:114.
-
(2014)
Genome Biol.
, vol.15
, pp. 114
-
-
Karreth, F.A.1
-
34
-
-
84896392369
-
The transcription factor titration effect dictates level of gene expression
-
Brewster R.C., et al. The transcription factor titration effect dictates level of gene expression. Cell 2014, 156:1312-1323.
-
(2014)
Cell
, vol.156
, pp. 1312-1323
-
-
Brewster, R.C.1
-
35
-
-
84883370908
-
Analysis of activator and repressor functions reveals the requirements for transcriptional control by LuxR, the master regulator of quorum sensing in Vibrio harveyi
-
van Kessel J.C., et al. Analysis of activator and repressor functions reveals the requirements for transcriptional control by LuxR, the master regulator of quorum sensing in Vibrio harveyi. mBio 2013, 4:e00378-e413.
-
(2013)
mBio
, vol.4
, pp. e00378-e413
-
-
van Kessel, J.C.1
-
36
-
-
33749362924
-
The Vibrio harveyi quorum-sensing system uses shared regulatory components to discriminate between multiple autoinducers
-
Waters C.M., Bassler B.L. The Vibrio harveyi quorum-sensing system uses shared regulatory components to discriminate between multiple autoinducers. Genes Dev. 2006, 20:2754-2767.
-
(2006)
Genes Dev.
, vol.20
, pp. 2754-2767
-
-
Waters, C.M.1
Bassler, B.L.2
-
37
-
-
0028342845
-
The evolution of functionally novel proteins after gene duplication
-
Hughes A.L. The evolution of functionally novel proteins after gene duplication. Proc. Biol. Sci. 1994, 256:119-124.
-
(1994)
Proc. Biol. Sci.
, vol.256
, pp. 119-124
-
-
Hughes, A.L.1
-
38
-
-
36749083463
-
Ohno's dilemma: evolution of new genes under continuous selection
-
Bergthorsson U., et al. Ohno's dilemma: evolution of new genes under continuous selection. Proc. Natl. Acad. Sci. U.S.A. 2007, 104:17004-17009.
-
(2007)
Proc. Natl. Acad. Sci. U.S.A.
, vol.104
, pp. 17004-17009
-
-
Bergthorsson, U.1
-
39
-
-
84870687980
-
Evolution of minimal specificity and promiscuity in steroid hormone receptors
-
Eick G.N., et al. Evolution of minimal specificity and promiscuity in steroid hormone receptors. PLoS Genet. 2012, 8:e1003072.
-
(2012)
PLoS Genet.
, vol.8
, pp. e1003072
-
-
Eick, G.N.1
-
40
-
-
84860741240
-
Engineering the third wave of biocatalysis
-
Bornscheuer U.T., et al. Engineering the third wave of biocatalysis. Nature 2012, 485:185-194.
-
(2012)
Nature
, vol.485
, pp. 185-194
-
-
Bornscheuer, U.T.1
-
41
-
-
84865146694
-
Enzymes for the homeland defense: optimizing phosphotriesterase for the hydrolysis of organophosphate nerve agents
-
Tsai P.C., et al. Enzymes for the homeland defense: optimizing phosphotriesterase for the hydrolysis of organophosphate nerve agents. Biochemistry 2012, 51:6463-6475.
-
(2012)
Biochemistry
, vol.51
, pp. 6463-6475
-
-
Tsai, P.C.1
-
42
-
-
84860203472
-
Evolved stereoselective hydrolases for broad-spectrum G-type nerve agent detoxification
-
Goldsmith M., et al. Evolved stereoselective hydrolases for broad-spectrum G-type nerve agent detoxification. Chem. Biol. 2012, 19:456-466.
-
(2012)
Chem. Biol.
, vol.19
, pp. 456-466
-
-
Goldsmith, M.1
-
43
-
-
84889671228
-
Expanding the metabolic engineering toolbox with directed evolution
-
Abatemarco J., et al. Expanding the metabolic engineering toolbox with directed evolution. Biotechnol. J. 2013, 8:1397-1410.
-
(2013)
Biotechnol. J.
, vol.8
, pp. 1397-1410
-
-
Abatemarco, J.1
-
44
-
-
77953643054
-
Adding new chemistries to the genetic code
-
Liu C.C., Schultz P.G. Adding new chemistries to the genetic code. Annu. Rev. Biochem. 2010, 79:413-444.
-
(2010)
Annu. Rev. Biochem.
, vol.79
, pp. 413-444
-
-
Liu, C.C.1
Schultz, P.G.2
-
45
-
-
84910002245
-
Synthesis of base-modified 2'-deoxyribonucleoside triphosphates and their use in enzymatic synthesis of modified DNA for applications in bioanalysis and chemical biology
-
Hocek M. Synthesis of base-modified 2'-deoxyribonucleoside triphosphates and their use in enzymatic synthesis of modified DNA for applications in bioanalysis and chemical biology. J. Org. Chem. 2014, 79:9914-9921.
-
(2014)
J. Org. Chem.
, vol.79
, pp. 9914-9921
-
-
Hocek, M.1
-
46
-
-
0031984418
-
Direct detection of 8-oxodeoxyguanosine and 8-oxoguanine by avidin and its analogues
-
Struthers L., et al. Direct detection of 8-oxodeoxyguanosine and 8-oxoguanine by avidin and its analogues. Anal. Biochem. 1998, 255:20-31.
-
(1998)
Anal. Biochem.
, vol.255
, pp. 20-31
-
-
Struthers, L.1
-
47
-
-
0033966410
-
Health effects of endocrine-disrupting chemicals on wildlife, with special reference to the European situation
-
Vos J.G., et al. Health effects of endocrine-disrupting chemicals on wildlife, with special reference to the European situation. Crit. Rev. Toxicol. 2000, 30:71-133.
-
(2000)
Crit. Rev. Toxicol.
, vol.30
, pp. 71-133
-
-
Vos, J.G.1
-
48
-
-
67449132400
-
Endocrine-disrupting chemicals: an Endocrine Society scientific statement
-
Diamanti-Kandarakis E., et al. Endocrine-disrupting chemicals: an Endocrine Society scientific statement. Endocr. Rev. 2009, 30:293-342.
-
(2009)
Endocr. Rev.
, vol.30
, pp. 293-342
-
-
Diamanti-Kandarakis, E.1
-
49
-
-
33751049816
-
Conotoxins down under
-
Norton R.S., Olivera B.M. Conotoxins down under. Toxicon 2006, 48:780-798.
-
(2006)
Toxicon
, vol.48
, pp. 780-798
-
-
Norton, R.S.1
Olivera, B.M.2
-
50
-
-
84858178207
-
Conus venom peptide pharmacology
-
Lewis R.J., et al. Conus venom peptide pharmacology. Pharmacol. Rev. 2012, 64:259-298.
-
(2012)
Pharmacol. Rev.
, vol.64
, pp. 259-298
-
-
Lewis, R.J.1
|