Role of 2-phosphoglycolate phosphatase of Escherichia coli in metabolism of the 2-phosphoglycolate formed in DNA repair

Journal of Bacteriology

Volumn 185, Issue 19, 2003, Pages 5815-5821

  Pellicer, Maria Teresa ^a,b   Nuñez, Maria Felisa ^a   Aguilar, Juan ^a   Badia, Josefa ^a   Baldoma, Laura ^a  

^a UNIVERSITY OF BARCELONA   (Spain)

^b Laboratorios SALVAT   (Spain)

Author keywords

[No Author keywords available]

Indexed keywords

2 PHOSPHOGLYCOLATE; 2 PHOSPHOGLYCOLATE PHOSPHATASE; BACTERIAL ENZYME; BLEOMYCIN; DNA; GLYCOLIC ACID DERIVATIVE; UNCLASSIFIED DRUG;

AMINO ACID SEQUENCE; ARTICLE; BACTERIAL GENE; BACTERIAL STRAIN; CARBON SOURCE; CONTROLLED STUDY; DNA REPAIR; DNA STRAND BREAKAGE; ENZYME ACTIVITY; ENZYME ANALYSIS; ENZYME MECHANISM; ENZYME METABOLISM; ENZYME PURIFICATION; ENZYME SUBSTRATE; ESCHERICHIA COLI; GENE EXPRESSION; GENETIC CODE; GPH GENE; HOUSEKEEPING GENE; NONHUMAN; OXIDATIVE STRESS; PRIORITY JOURNAL; PROTEIN FUNCTION; WESTERN BLOTTING;

AMINO ACID SEQUENCE; BLEOMYCIN; CLONING, MOLECULAR; DNA DAMAGE; DNA REPAIR; ESCHERICHIA COLI; GLYCOLATES; MOLECULAR SEQUENCE DATA; OXIDATIVE STRESS; PHOSPHORIC MONOESTER HYDROLASES; SEQUENCE ANALYSIS, DNA;

BACTERIA (MICROORGANISMS); ESCHERICHIA COLI; FELIS CATUS; NEGIBACTERIA;

EID: 0141727583     PISSN: 00219193     EISSN: None     Source Type: Journal    
DOI: 10.1128/JB.185.19.5815-5821.2003     Document Type: Article

References (39)

1. Baldoma, L., and J. Aguilar. 1987. Involvement of lactaldehyde dehydrogenase in several metabolic pathways of Escherichia coli K12. J. Biol. Chem. 262:13991-13996.
2. Bettl, M., S. Petrucco, A. Bolchi, G. Dieci, and S. Ottonello. 2001. A plant 3′-phosphoesterase involved in the repair of DNA strand breaks generated by oxidative damage. J. Biol. Chem. 276:18038-18045.
3. Blattner, F. R., G. Plunkett III, C. A. Bloch, N. T. Perna, V. Burland, M. Riley, J. Collado-Vides, J. D. Glasner, C. K. Rode, G. F. Mayhew, J. Gregor, N. W. Davis, H. A. Kirkpatrick, M. A. Goeden, D. J. Rose, B. Mau, and Y. Shao. 1997. The complete genome sequence of Escherichia coli K-12. Science 277:1453-1462.
4. Boronat, A., and J. Aguilar. 1979. Rhamnose-induced propanediol oxidoreductase in Escherichia coli: purification, properties, and comparison with the fucose-induced enzyme. J. Bacteriol. 140:320-326.
5. Bult, C. J., O. White, G. J. Olsen, L. Zhou, R. D. Fleischmann, G. G. Sutton, J. A. Blake, L. M. FitzGerald, R. A. Clayton, J. D. Gocayne, A. R. Kerlavage, B. A. Dougherty, J. F. Tomh, M. D. Adams, C. I. Reich, R. Overbeek, E. F. Kirkness, K. G. Welnstock, J. M. Merrick, A. Glodek, J. L. Scott, N. S. Geoghagen, and J. C. Venter. 1996. Complete genome sequence of the methanogenic archaeon, Methanococcus jannaschii. Science 273:1058-1073.
6. Casadaban, M. J. 1976. Transposition and fusion of the lac genes to selected promoters in Escherichia coli using bacteriophage lambda and Mu. J. Mol. Biol. 104:541-555.
7. Christeller, J. T., and N. E. Tolbert. 1978. Phosphoglycolate phosphatase: purification and properties. J. Biol. Chem. 253:1780-1785.
8. Demple, B., and L. Harrison. 1994. Repair of oxidative damage to DNA: enzymology and biology. Annu. Rev. Biochem. 63:915-948.
9. Gallnier, A., M. Kravanja, R. Engelmann, W. Hengstenberg, M. C. Kilhoffer, J. Deutscher, and J. Haiech. 1998. New protein kinase and protein phosphatase families mediate signal transduction in bacterial catabolite repression. Proc. Natl. Acad. Sci. USA 95:1823-1828.
10. Gihson, J. L., and F. R. Tahita. 1997. Analysis of the cbbXYZ operon in Rhodobacter sphaeroides. J. Bacteriol. 179:663-669.
11. Gu, L., S. M. Huang, and M. Sander. 1994. Single amino acid changes alter the repair specificity of Drosophila Rrp1. Isolation of mutants deficient in repair of oxidative DNA damage. J. Biol. Chem. 269:32685-32692.
12. Hall, C. V., and C. Yanofsky. 1981. Cloning and characterization of the gene for Escherichia coli tryptophanyl-transfer ribonucleic acid synthetase. J. Bacteriol. 148:941-949.
13. Hardy, P., and P. Baldy. 1986. Corn phosphoglycolate phosphatase: purification and properties. Planta 168:245-252.
14. Husic, H. D., and N. E. Tolbert. 1984. Anion and divalent cation activation of phosphoglycolate phosphatase from leaves. Arch. Biochem. Biophys. 229:64-72.
15. Jonczyk, P., R. Hines, and D. W. Smith. 1989. The Escherichia coli dam gene is expressed as a distal gene of a new operon. Mol. Gen. Genet. 217:85-96.
16. Laemmli, U. K. 1970. Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature 227:680-685.
17. Lineweaver, H., and D. Burk. 1934. Determination of the enzyme dissociation constants. J. Am. Chem. Soc. 56:658-666.
18. Lobner-Olesen, A., and M. G. Marinus. 1992. Identification of the gene (aroK) encoding shikimic acid kinase I of Escherichia coli. J. Bacteriol. 174:525-529.
19. Lowry, O. H., N. J. Rosebrough, A. L. Farr, and R. J. Randall. 1951. Protein measurement with the Folin phenol reagent. J. Biol. Chem. 193:265-275.
20. Lyngstadaas, A., A. Lobner-Olesen, and E. Boye. 1995. Characterization of three genes in the dam-containing operon of Escherichia coli. Mol. Gen. Genet. 247:546-554.
21. Lyngstadaas, A., G. A. Sprenger, and E. Boye. 1998. Impaired growth of an Escherichia coli rpe mutant lacking ribulose-5-phosphate epimerase activity. Biochim. Biophys. Acta 1381:319-330.
22. Lyngstadaas, A., A. Lobner-Olesen, E. Grelland, and E. Boye. 1999. The gene for 2-phosphoglycolate phosphatase (gph) in Escherichia coli is located in the same operon as dam and at least five other diverse genes. Biochim. Biophys. Acta 1472:376-384.
23. Mamedov, T. G., K. Suzuki, K. Miura, K. I. Kucho, and H. Fukuzawa. 2001. Characteristics and sequence of phosphoglycolate phosphatase from a eukaryotic green alga Chlamydomonas reinhardtii. J. Biol. Chem. 276:45573-45579.
24. Millar, G., and J. R. Coggins. 1986. The complete amino acid sequence of 3-dehydroquinate synthase of Escherichia coli K12. FEBS Lett. 200:11-17.
25. Miller, J. H. 1992. Experiments in molecular genetics. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y.
26. Pellicer, M. T., C. Fernandez, J. Badia, J. Aguilar, E. C. C. Lin, and L. Baldoma. 1999. Cross-induction of glc and ace operons of Escherichia coli attributable to pathway intersection. Characterization of the glc promoter. J. Biol. Chem. 274:1745-1752.
27. Rose, Z. B., D. S. Grove, and S. N. Seal. 1986. Mechanism of activation by anions of phosphoglycolate phosphatases from spinach and human red blood cells. J. Biol. Chem. 261:10996-11002.
28. Sakakihara, Y. 1997. Involvement of the ribulosephosphate epimerase gene in the dnaA and dnaR functions for initiation of chromosome replication in Escherichia coli. Mol. Microbiol. 24:793-801.
29. Samhrook, J., and D. W. Russell. 2001. Molecular cloning: a laboratory manual. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y.
30. Sander, M., and D. Ramotar. 1997. Partial purification of Pdel from Saccharomyces cerevisiae: enzymatic redundancy for the repair of 3′-terminal DNA lesions and abasic sites in yeast. Biochemistry 36:6100-6106.
31. Sandigursky, M., and W. A. Franklin. 1998. Exonuclease IX of Escherichia coli removes 3′-phosphoglycolate end groups from DNA. Radiat. Res. 150:609-611.
32. Schäferjohann, J., J. G. Yoo, and B. Bowien. 1993. The cbb operons of the facultative chemoautotroph Alcaligenes eutrophus encode phosphoglycolate phosphatase. J. Bacteriol. 175:7329-7340.
33. Seal, S. N., and Z. B. Rose. 1987. Characterization of a phosphoenzyme intermediate in the reaction of phosphoglycolate phosphatase. J. Biol. Chem. 262:13496-13500.
34. Shively, J. M., G. van Keulen, and W. G. Meijer. 1998. Something from almost nothing: carbon dioxide fixation in chemoautotrophs. Annu. Rev. Microbiol. 52:191-230.
35. Stubbe, J., and J. W. Kozarich. 1987. Mechanism of bleomycin-induced DNA degradation. Chem. Rev. 87:1107-1136.
36. Vinella, D., B. Gagny, D. Joseleau-Petit, R. D'Ari, and M. Cashel. 1996. Mecillinam resistance in Escherichia coli is conferred by loss of a second activity of the AroK protein. J. Bacteriol. 178:3818-3828.
37. Watson, G. M. F., J. P. Yu, and F. R. Tabita. 1999. Unusual ribulose 1,5-bisphosphate carboxylase/oxygenase of anoxic Archaea. J. Bacteriol. 181:1569-1575.
38. Xu, Y. J., E. Y. Kim, and B. Demple. 1998. Excision of C-4′-oxidized deoxyribose lesions from double-stranded DNA by human apurinic/apyrimidinic endonuclease (Apel protein) and DNA polymerase beta. J. Biol. Chem. 273:28837-28844.
39. Zecher, R., U. Schwulera, and H. U. Wolf. 1982. Purification, isolation and characterization of a phosphoglycolate phosphatase isoenzyme from human erythrocytes. Int. J. Biochem. 14:775-781.