-
1
-
-
0031675951
-
Requirement of the MADS-box transcription factor MEF2C for vascular development
-
Lin, Q., Lu, J., Yanagisawa, H., Webb, R., Lyons, G. E., Richardson, J. A. And Olson, E. N. (1998) Requirement of the MADS-box transcription factor MEF2C for vascular development. Development, 125, 4565-4574.
-
(1998)
Development
, vol.125
, pp. 4565-4574
-
-
Lin, Q.1
Lu, J.2
Yanagisawa, H.3
Webb, R.4
Lyons, G.E.5
Richardson, J.A.6
Olson, E.N.7
-
2
-
-
0028279115
-
Mef2 gene-expression marks the cardiac and skeletal-muscle lineages during mouse embryogenesis
-
Edmondson, D. G., Lyons, G. E., Martin, J. F. And Olson, E. N. (1994) Mef2 gene-expression marks the cardiac and skeletal-muscle lineages during mouse embryogenesis. Development, 120, 1251-1263.
-
(1994)
Development
, vol.120
, pp. 1251-1263
-
-
Edmondson, D.G.1
Lyons, G.E.2
Martin, J.F.3
Olson, E.N.4
-
3
-
-
0029085629
-
Expression of Mef2 genes in the mouse central-nervous-system suggests a role in neuronal maturation
-
Lyons, G. E., Micales, B. K., Schwarz, J., Martin, J. F. And Olson, E. N. (1995) Expression of Mef2 genes in the mouse central-nervous-system suggests a role in neuronal maturation. J. Neurosci., 15, 5727-5738.
-
(1995)
J. Neurosci.
, vol.15
, pp. 5727-5738
-
-
Lyons, G.E.1
Micales, B.K.2
Schwarz, J.3
Martin, J.F.4
Olson, E.N.5
-
4
-
-
0028842908
-
Regulation of the Nur77 orphan steroid-receptor in activation-induced apoptosis
-
Woronicz, J. D., Lina, A., Calnan, B. J., Szychowski, S., Cheng, L. And Winoto, A. (1995) Regulation of the Nur77 orphan steroid-receptor in activation-induced apoptosis. Mol. Cell. Biol., 15, 6364-6376.
-
(1995)
Mol. Cell. Biol.
, vol.15
, pp. 6364-6376
-
-
Woronicz, J.D.1
Lina, A.2
Calnan, B.J.3
Szychowski, S.4
Cheng, L.5
Winoto, A.6
-
5
-
-
0025840260
-
Human srf-related proteins-DNA-binding properties and potential regulatory targets
-
Pollock, R. And Treisman, R. (1991) Human srf-related proteins-dna-binding properties and potential regulatory targets. Genes Dev., 5, 2327-2341.
-
(1991)
Genes Dev.
, vol.5
, pp. 2327-2341
-
-
Pollock, R.1
Treisman, R.2
-
6
-
-
0028838391
-
Determination of the consensus binding-site forMef2 expressed in muscle and brain reveals tissue-specific sequence constraints
-
Andres, V., Cervera, M. And Mahdavi, V. (1995) Determination of the consensus binding-site forMef2 expressed in muscle and brain reveals tissue-specific sequence constraints. J. Biol. Chem., 270, 23246-23249.
-
(1995)
J. Biol. Chem.
, vol.270
, pp. 23246-23249
-
-
Andres, V.1
Cervera, M.2
Mahdavi, V.3
-
7
-
-
0030894683
-
Activation of the transcription factor MEF2C by the MAP kinase p38 in inflammation
-
Han, J., Jiang, Y., Li, Z., Kravchenko, V. And Ulevitch, R. (1997) Activation of the transcription factor MEF2C by the MAP kinase p38 in inflammation. Nature, 386, 296-299.
-
(1997)
Nature
, vol.386
, pp. 296-299
-
-
Han, J.1
Jiang, Y.2
Li, Z.3
Kravchenko, V.4
Ulevitch, R.5
-
8
-
-
0033582459
-
P38 mitogen-activated protein kinase pathway promotes skeletal muscle differentiation-participation of the MEF2C transcription factor
-
Zetser, A., Gredinger, E. And Bengal, E. (1999) p38 mitogen-activated protein kinase pathway promotes skeletal muscle differentiation-participation of the MEF2C transcription factor. J. Biol. Chem., 274, 5193-5200.
-
(1999)
J. Biol. Chem.
, vol.274
, pp. 5193-5200
-
-
Zetser, A.1
Gredinger, E.2
Bengal, E.3
-
9
-
-
0030694387
-
BMK1/ERK5 regulates serum-induced early gene expression through transcription factor MEF2C
-
Kato, Y., Kravchenko, V., Tapping, R., Han, J., Ulevitch, R. And Lee, J. (1997) BMK1/ERK5 regulates serum-induced early gene expression through transcription factor MEF2C. EMBO J., 16, 7054-7066.
-
(1997)
EMBO J.
, vol.16
, pp. 7054-7066
-
-
Kato, Y.1
Kravchenko, V.2
Tapping, R.3
Han, J.4
Ulevitch, R.5
Lee, J.6
-
10
-
-
42349092514
-
Protein kinase a represses skeletal myogenesis by targeting myocyte enhancer factor 2D
-
Du, M., Perry, R. L. S., Nowacki, N. B., Gordon, J. W., Salma, J., Zhao, J., Aziz, A., Chan, J., Siu, K. W. M. And McDermott, J. C. (2008) Protein kinase a represses skeletal myogenesis by targeting myocyte enhancer factor 2D. Mol. Cell. Biol., 28, 2952-2970.
-
(2008)
Mol. Cell. Biol.
, vol.28
, pp. 2952-2970
-
-
Du, M.1
Perry, R.L.S.2
Nowacki, N.B.3
Gordon, J.W.4
Salma, J.5
Zhao, J.6
Aziz, A.7
Chan, J.8
Siu, K.W.M.9
McDermott, J.C.10
-
11
-
-
0033568028
-
HDAC4 deacetylase associates with and represses the MEF2 transcription factor
-
Miska, E. A., Karlsson, C., Langley, E., Nielsen, S. J., Pines, J. And Kouzarides, T. (1999) HDAC4 deacetylase associates with and represses the MEF2 transcription factor. EMBO J., 18, 5099-5107.
-
(1999)
EMBO J.
, vol.18
, pp. 5099-5107
-
-
Miska, E.A.1
Karlsson, C.2
Langley, E.3
Nielsen, S.J.4
Pines, J.5
Kouzarides, T.6
-
12
-
-
0033635242
-
Regulation of skeletal myogenesis by association of the MEF2 transcription factor with class II histone deacetylases
-
Lu, J. R., McKinsey, T. A., Zhang, C. L. And Olson, E. N. (2000) Regulation of skeletal myogenesis by association of the MEF2 transcription factor with class II histone deacetylases. Mol. Cell, 6, 233-244.
-
(2000)
Mol. Cell
, vol.6
, pp. 233-244
-
-
Lu, J.R.1
McKinsey, T.A.2
Zhang, C.L.3
Olson, E.N.4
-
13
-
-
0030911475
-
Control of mouse cardiac morphogenesis and myogenesis by transcription factor MEF2C
-
Lin, Q., Schwarz, J., Bucana, C. And Olson, E. N. (1997) Control of mouse cardiac morphogenesis and myogenesis by transcription factor MEF2C. Science, 276, 1404-1407.
-
(1997)
Science
, vol.276
, pp. 1404-1407
-
-
Lin, Q.1
Schwarz, J.2
Bucana, C.3
Olson, E.N.4
-
14
-
-
0033010960
-
Transcriptional activity of MEF2 during mouse embryogenesis monitored with a MEF2-dependent transgene
-
Naya, F. J., Wu, C. Z., Richardson, J. A., Overbeek, P. And Olson, E. N. (1999) Transcriptional activity of MEF2 during mouse embryogenesis monitored with a MEF2-dependent transgene. Development, 126, 2045-2052.
-
(1999)
Development
, vol.126
, pp. 2045-2052
-
-
Naya, F.J.1
Wu, C.Z.2
Richardson, J.A.3
Overbeek, P.4
Olson, E.N.5
-
15
-
-
0037162697
-
Class II histone deacetylases act as signal-responsive repressors of cardiac hypertrophy
-
Zhang, C. L., McKinsey, T. A., Chang, S. R., Antos, C. L., Hill, J. A. And Olson, E. N. (2002) Class II histone deacetylases act as signal-responsive repressors of cardiac hypertrophy. Cell, 110, 479-488.
-
(2002)
Cell
, vol.110
, pp. 479-488
-
-
Zhang, C.L.1
McKinsey, T.A.2
Chang, S.R.3
Antos, C.L.4
Hill, J.A.5
Olson, E.N.6
-
16
-
-
84896521456
-
Requirement of MEF2A, C, and D for skeletal muscle regeneration
-
Liu, N., Nelson, B. R., Bezprozvannaya, S., Shelton, J. M., Richardson, J. A., Bassel-Duby, R. And Olson, E. N. (2014) Requirement of MEF2A, C, and D for skeletal muscle regeneration. Proc. Natl. Acad. Sci. U. S. A., 111, 4109-4114.
-
(2014)
Proc. Natl. Acad. Sci. U. S. A.
, vol.111
, pp. 4109-4114
-
-
Liu, N.1
Nelson, B.R.2
Bezprozvannaya, S.3
Shelton, J.M.4
Richardson, J.A.5
Bassel-Duby, R.6
Olson, E.N.7
-
17
-
-
0036851837
-
Mitochondrial deficiency and cardiac sudden death in mice lacking the MEF2A transcription factor
-
Naya, F., Black, B., Wu, H., Bassel-Duby, R., Richardson, J., Hill, J. And Olson, E. (2002) Mitochondrial deficiency and cardiac sudden death in mice lacking the MEF2A transcription factor. Nat. Med., 8, 1303-1309.
-
(2002)
Nat. Med.
, vol.8
, pp. 1303-1309
-
-
Naya, F.1
Black, B.2
Wu, H.3
Bassel-Duby, R.4
Richardson, J.5
Hill, J.6
Olson, E.7
-
18
-
-
38149029264
-
The MEF2D transcription factor mediates stress-dependent cardiac remodeling in mice
-
Kim, Y., Phan, D., Van Rooij, E., Wang, D., McAnally, J., Qi, X., Richardson, J. A., Hill, J. A., Bassel-Duby, R. And Olson, E. N. (2008) The MEF2D transcription factor mediates stress-dependent cardiac remodeling in mice. J. Clin. Invest., 118, 124-132.
-
(2008)
J. Clin. Invest.
, vol.118
, pp. 124-132
-
-
Kim, Y.1
Phan, D.2
Van Rooij, E.3
Wang, D.4
McAnally, J.5
Qi, X.6
Richardson, J.A.7
Hill, J.A.8
Bassel-Duby, R.9
Olson, E.N.10
-
19
-
-
34848858523
-
Histone deacetylase degradation and MEF2 activation promote the formation of slow-twitch myofibers
-
Potthoff, M. J., Wu, H., Arnold, M. A., Shelton, J. M., Backs, J., McAnally, J., Richardson, J. A., Bassel-Duby, R. And Olson, E. N. (2007) Histone deacetylase degradation and MEF2 activation promote the formation of slow-twitch myofibers. J. Clin. Invest., 117, 2459-2467.
-
(2007)
J. Clin. Invest.
, vol.117
, pp. 2459-2467
-
-
Potthoff, M.J.1
Wu, H.2
Arnold, M.A.3
Shelton, J.M.4
Backs, J.5
McAnally, J.6
Richardson, J.A.7
Bassel-Duby, R.8
Olson, E.N.9
-
20
-
-
36849039931
-
Regulation of skeletal muscle sarcomere integrity and postnatal muscle function by Mef2c
-
Potthoff, M. J., Arnold, M. A., McAnally, J., Richardson, J. A., Bassel-Duby, R. And Olson, E. N. (2007) Regulation of skeletal muscle sarcomere integrity and postnatal muscle function by Mef2c. Mol. Cell. Biol., 27, 8143-8151.
-
(2007)
Mol. Cell. Biol.
, vol.27
, pp. 8143-8151
-
-
Potthoff, M.J.1
Arnold, M.A.2
McAnally, J.3
Richardson, J.A.4
Bassel-Duby, R.5
Olson, E.N.6
-
21
-
-
19244386873
-
CaM kinase signaling induces cardiac hypertrophy and activates the MEF2 transcription factor in vivo
-
Passier, R., Zeng, H., Frey, N., Naya, F. J., Nicol, R. L., McKinsey, T. A., Overbeek, P., Richardson, J. A., Grant, S. R. And Olson, E. N. (2000) CaM kinase signaling induces cardiac hypertrophy and activates the MEF2 transcription factor in vivo. J. Clin. Invest., 105, 1395-1406.
-
(2000)
J. Clin. Invest.
, vol.105
, pp. 1395-1406
-
-
Passier, R.1
Zeng, H.2
Frey, N.3
Naya, F.J.4
Nicol, R.L.5
McKinsey, T.A.6
Overbeek, P.7
Richardson, J.A.8
Grant, S.R.9
Olson, E.N.10
-
22
-
-
4544315655
-
Protein kinases C and D mediate agonist-dependent cardiac hypertrophy through nuclear export of histone deacetylase 5
-
Vega, R., Harrison, B., Meadows, E., Roberts, C., Papst, P., Olson, E. And McKinsey, T. (2004) Protein kinases C and D mediate agonist-dependent cardiac hypertrophy through nuclear export of histone deacetylase 5. Mol. Cell. Biol., 24, 8374-8385.
-
(2004)
Mol. Cell. Biol.
, vol.24
, pp. 8374-8385
-
-
Vega, R.1
Harrison, B.2
Meadows, E.3
Roberts, C.4
Papst, P.5
Olson, E.6
McKinsey, T.7
-
23
-
-
0027405001
-
Muscle-specific gene-expression-a comparison of cardiac and skeletal-muscle transcription strategies
-
Sartorelli, V., Kurabayashi, M. And Kedes, L. (1993) Muscle-specific gene-expression-a comparison of cardiac and skeletal-muscle transcription strategies. Circ. Res., 72, 925-931.
-
(1993)
Circ. Res.
, vol.72
, pp. 925-931
-
-
Sartorelli, V.1
Kurabayashi, M.2
Kedes, L.3
-
24
-
-
14644390321
-
An initial blueprint for myogenic differentiation
-
Blais, A., Tsikitis, M., Acosta-Alvear, D., Sharan, R., Kluger, Y. And Dynlacht, B. D. (2005) An initial blueprint for myogenic differentiation. Genes Dev., 19, 553-569.
-
(2005)
Genes Dev.
, vol.19
, pp. 553-569
-
-
Blais, A.1
Tsikitis, M.2
Acosta-Alvear, D.3
Sharan, R.4
Kluger, Y.5
Dynlacht, B.D.6
-
25
-
-
79952275149
-
The cardiac transcription network modulated by Gata4, Mef2a, Nkx2. 5, srf, histone modifications, and MicroRNAs
-
Schlesinger, J., Schueler, M., Grunert, M., Fischer, J. J., Zhang, Q., Krueger, T., Lange, M., Toenjes, M., Dunkel, I. And Sperling, S. R. (2011) The cardiac transcription network modulated by Gata4, Mef2a, Nkx2. 5, srf, histone modifications, and MicroRNAs. PloS Genet., 7, e1001313.
-
(2011)
PloS Genet.
, vol.7
, pp. e1001313
-
-
Schlesinger, J.1
Schueler, M.2
Grunert, M.3
Fischer, J.J.4
Zhang, Q.5
Krueger, T.6
Lange, M.7
Toenjes, M.8
Dunkel, I.9
Sperling, S.R.10
-
26
-
-
84878849371
-
Tissue-specific splicing of a ubiquitously expressed transcription factor is essential for muscle differentiation
-
Sebastian, S., Faralli, H., Yao, Z., Rakopoulos, P., Palii, C., Cao, Y., Singh, K., Liu, Q., Chu, A., Aziz, A. et al. (2013) Tissue-specific splicing of a ubiquitously expressed transcription factor is essential for muscle differentiation. Genes Dev., 27, 1247-1259.
-
(2013)
Genes Dev.
, vol.27
, pp. 1247-1259
-
-
Sebastian, S.1
Faralli, H.2
Yao, Z.3
Rakopoulos, P.4
Palii, C.5
Cao, Y.6
Singh, K.7
Liu, Q.8
Chu, A.9
Aziz, A.10
-
27
-
-
0033595816
-
Apoptosis of T cells mediated by Ca2+-induced release of the transcription factor MEF2
-
Youn, H. D., Sun, L., Prywes, R. And Liu, J. O. (1999) Apoptosis of T cells mediated by Ca2+-induced release of the transcription factor MEF2. Science, 286, 790-793.
-
(1999)
Science
, vol.286
, pp. 790-793
-
-
Youn, H.D.1
Sun, L.2
Prywes, R.3
Liu, J.O.4
-
28
-
-
0033595764
-
Neuronal activity-dependent cell survival mediated by transcription factor MEF2
-
Mao, Z. X., Bonni, A., Xia, F., Nadal-Vicens, M. And Greenberg, M. E. (1999) Neuronal activity-dependent cell survival mediated by transcription factor MEF2. Science, 286, 785-790.
-
(1999)
Science
, vol.286
, pp. 785-790
-
-
Mao, Z.X.1
Bonni, A.2
Xia, F.3
Nadal-Vicens, M.4
Greenberg, M.E.5
-
29
-
-
44049105823
-
Transcription factor Mef2c is required for B cell proliferation and survival after antigen receptor stimulation
-
Wilker, P. R., Kohyama, M., Sandau, M. M., Albring, J. C., Nakagawa, O., Schwarz, J. J. And Murphy, K. M. (2008) Transcription factor Mef2c is required for B cell proliferation and survival after antigen receptor stimulation. Nat. Immunol., 9, 603-612.
-
(2008)
Nat. Immunol.
, vol.9
, pp. 603-612
-
-
Wilker, P.R.1
Kohyama, M.2
Sandau, M.M.3
Albring, J.C.4
Nakagawa, O.5
Schwarz, J.J.6
Murphy, K.M.7
-
30
-
-
84857262435
-
Suppression of a MEF2-KLF6 survival pathway by PKA signaling promotes apoptosis in embryonic hippocampal neurons
-
Salma, J. And McDermott, J. C. (2012) Suppression of a MEF2-KLF6 survival pathway by PKA signaling promotes apoptosis in embryonic hippocampal neurons. J. Neurosci., 32, 2790-2803.
-
(2012)
J. Neurosci.
, vol.32
, pp. 2790-2803
-
-
Salma, J.1
McDermott, J.C.2
-
31
-
-
83255164884
-
Comprehensive genome-wide protein-DNA interactions detected at single-nucleotide resolution
-
Rhee, H. S. And Pugh, B. F. (2011) Comprehensive genome-wide protein-DNA interactions detected at single-nucleotide resolution. Cell, 147, 1408-1419.
-
(2011)
Cell
, vol.147
, pp. 1408-1419
-
-
Rhee, H.S.1
Pugh, B.F.2
-
32
-
-
0033168093
-
Post-translational control of the MEF2A transcriptional regulatory protein
-
Ornatsky, O. I., Cox, D. M., Tangirala, P., Andreucci, J. J., Quinn, Z. A., Wrana, J. L., Prywes, R., Yu, Y. T. And McDermott, J. C. (1999) Post-translational control of the MEF2A transcriptional regulatory protein. Nucleic Acids Res., 27, 2646-2654.
-
(1999)
Nucleic Acids Res.
, vol.27
, pp. 2646-2654
-
-
Ornatsky, O.I.1
Cox, D.M.2
Tangirala, P.3
Andreucci, J.J.4
Quinn, Z.A.5
Wrana, J.L.6
Prywes, R.7
Yu, Y.T.8
McDermott, J.C.9
-
33
-
-
44449113769
-
Negative-feedback regulation of FGF signalling by DUSP6/MKP-3 is driven by ERK1/2 and mediated by ets factor binding to a conserved site within the DUSP6/MKP-3 gene promoter
-
Ekerot, M., Stavridis, M. P., Delavaine, L., Mitchell, M. P., Staples, C., Owens, D. M., Keenan, I. D., Dickinson, R. J., Storey, K. G. And Keyse, S. M. (2008) Negative-feedback regulation of FGF signalling by DUSP6/MKP-3 is driven by ERK1/2 and mediated by ets factor binding to a conserved site within the DUSP6/MKP-3 gene promoter. Biochem. J., 412, 287-298.
-
(2008)
Biochem. J.
, vol.412
, pp. 287-298
-
-
Ekerot, M.1
Stavridis, M.P.2
Delavaine, L.3
Mitchell, M.P.4
Staples, C.5
Owens, D.M.6
Keenan, I.D.7
Dickinson, R.J.8
Storey, K.G.9
Keyse, S.M.10
-
34
-
-
0038391382
-
Phosphorylation motifs regulating the stability and function of myocyte enhancer factor 2A
-
Cox, D. M., Du, M., Marback, M., Yang, E. C. C., Chan, J., Siu, K. W. M. And McDermott, J. C. (2003) Phosphorylation motifs regulating the stability and function of myocyte enhancer factor 2A. J. Biol. Chem., 278, 15297-15303.
-
(2003)
J. Biol. Chem.
, vol.278
, pp. 15297-15303
-
-
Cox, D.M.1
Du, M.2
Marback, M.3
Yang, E.C.C.4
Chan, J.5
Siu, K.W.M.6
McDermott, J.C.7
-
35
-
-
84878586513
-
Kruppel-like factor 6 (KLF6) promotes cell proliferation in skeletal myoblasts in response to TGFbeta/Smad3 signaling
-
Dionyssiou, M. G., Salma, J., Bevzyuk, M., Wales, S., Zakharyan, L. And McDermott, J. C. (2013) Kruppel-like factor 6 (KLF6) promotes cell proliferation in skeletal myoblasts in response to TGFbeta/Smad3 signaling. Skelet. Muscle, 3, 7.
-
(2013)
Skelet. Muscle
, vol.3
, pp. 7
-
-
Dionyssiou, M.G.1
Salma, J.2
Bevzyuk, M.3
Wales, S.4
Zakharyan, L.5
McDermott, J.C.6
-
36
-
-
67649884743
-
Fast and accurate short read alignment with Burrows-Wheeler transform
-
Li, H. And Durbin, R. (2009) Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics, 25, 1754-1760.
-
(2009)
Bioinformatics
, vol.25
, pp. 1754-1760
-
-
Li, H.1
Durbin, R.2
-
37
-
-
68549104404
-
The Sequence Alignment/Map format and SAMtools
-
1000 Genome Project Data Processing Subgroup
-
Li, H., Handsaker, B., Wysoker, A., Fennell, T., Ruan, J., Homer, N., Marth, G., Abecasis, G., Durbin, R. And 1000 Genome Project Data Processing Subgroup (2009) The Sequence Alignment/Map format and SAMtools. Bioinformatics, 25, 2078-2079.
-
(2009)
Bioinformatics
, vol.25
, pp. 2078-2079
-
-
Li, H.1
Handsaker, B.2
Wysoker, A.3
Fennell, T.4
Ruan, J.5
Homer, N.6
Marth, G.7
Abecasis, G.8
Durbin, R.9
-
38
-
-
53849146020
-
Model-based analysis of ChIP-seq (MACS)
-
Zhang, Y., Liu, T., Meyer, C. A., Eeckhoute, J., Johnson, D. S., Bernstein, B. E., Nussbaum, C., Myers, R. M., Brown, M., Li, W. et al. (2008) Model-based analysis of ChIP-seq (MACS). Genome Biol., 9, R137.
-
(2008)
Genome Biol.
, vol.9
, pp. R137
-
-
Zhang, Y.1
Liu, T.2
Meyer, C.A.3
Eeckhoute, J.4
Johnson, D.S.5
Bernstein, B.E.6
Nussbaum, C.7
Myers, R.M.8
Brown, M.9
Li, W.10
-
39
-
-
0036079158
-
The human genome browser at UCSC
-
Kent, W. J., Sugnet, C. W., Furey, T. S., Roskin, K. M., Pringle, T. H., Zahler, A. M. And Haussler, D. (2002) The human genome browser at UCSC. Genome Res., 12, 996-1006.
-
(2002)
Genome Res.
, vol.12
, pp. 996-1006
-
-
Kent, W.J.1
Sugnet, C.W.2
Furey, T.S.3
Roskin, K.M.4
Pringle, T.H.5
Zahler, A.M.6
Haussler, D.7
-
40
-
-
84905049901
-
Trimmomatic: A flexible trimmer for Illumina sequence data
-
Bolger, A. M., Lohse, M. And Usadel, B. (2014) Trimmomatic: A flexible trimmer for Illumina sequence data. Bioinformatics, 30, 2114-2120.
-
(2014)
Bioinformatics
, vol.30
, pp. 2114-2120
-
-
Bolger, A.M.1
Lohse, M.2
Usadel, B.3
-
41
-
-
65449136284
-
TopHat: Discovering splice junctions with RNA-Seq
-
Trapnell, C., Pachter, L. And Salzberg, S. L. (2009) TopHat: discovering splice junctions with RNA-Seq. Bioinformatics, 25, 1105-1111.
-
(2009)
Bioinformatics
, vol.25
, pp. 1105-1111
-
-
Trapnell, C.1
Pachter, L.2
Salzberg, S.L.3
-
42
-
-
75249087100
-
EdgeR: A Bioconductor package for differential expression analysis of digital gene expression data
-
Robinson, M. D., McCarthy, D. J. And Smyth, G. K. (2010) edgeR: A Bioconductor package for differential expression analysis of digital gene expression data. Bioinformatics, 26, 139-140.
-
(2010)
Bioinformatics
, vol.26
, pp. 139-140
-
-
Robinson, M.D.1
McCarthy, D.J.2
Smyth, G.K.3
-
43
-
-
77958471357
-
Differential expression analysis for sequence count data
-
Anders, S. And Huber, W. (2010) Differential expression analysis for sequence count data. Genome biol., 11, R106.
-
(2010)
Genome Biol.
, vol.11
, pp. R106
-
-
Anders, S.1
Huber, W.2
-
44
-
-
77952214662
-
GREAT improves functional interpretation of cis-regulatory regions
-
McLean, C. Y., Bristor, D., Hiller, M., Clarke, S. L., Schaar, B. T., Lowe, C. B., Wenger, A. M. And Bejerano, G. (2010) GREAT improves functional interpretation of cis-regulatory regions. Nat. Biotechnol., 28, 495-501.
-
(2010)
Nat. Biotechnol.
, vol.28
, pp. 495-501
-
-
McLean, C.Y.1
Bristor, D.2
Hiller, M.3
Clarke, S.L.4
Schaar, B.T.5
Lowe, C.B.6
Wenger, A.M.7
Bejerano, G.8
-
45
-
-
79959983507
-
CENTDIST: Discovery of co-associated factors by motif distribution
-
Zhang, Z., Chang, C. W., Goh, W. L., Sung, W. And Cheung, E. (2011) CENTDIST: discovery of co-associated factors by motif distribution. Nucleic Acids Res., 39, W391-W399.
-
(2011)
Nucleic Acids Res.
, vol.39
, pp. W391-W399
-
-
Zhang, Z.1
Chang, C.W.2
Goh, W.L.3
Sung, W.4
Cheung, E.5
-
46
-
-
77951935861
-
Genome-wide MyoD binding in skeletal muscle cells: A potential for broad cellular reprogramming
-
Cao, Y., Yao, Z., Sarkar, D., Lawrence, M., Sanchez, G. J., Parker, M. H., MacQuarrie, K. L., Davison, J., Morgan, M. T., Ruzzo, W. L. et al. (2010) Genome-wide MyoD binding in skeletal muscle cells: A potential for broad cellular reprogramming. Dev. Cell, 18, 662-674.
-
(2010)
Dev. Cell
, vol.18
, pp. 662-674
-
-
Cao, Y.1
Yao, Z.2
Sarkar, D.3
Lawrence, M.4
Sanchez, G.J.5
Parker, M.H.6
MacQuarrie, K.L.7
Davison, J.8
Morgan, M.T.9
Ruzzo, W.L.10
-
47
-
-
12344269924
-
GO::TermFinder-open source software for accessing gene ontology information and finding significantly enriched gene ontology terms associated with a list of genes
-
Boyle, E. I., Weng, S. A., Gollub, J., Jin, H., Botstein, D., Cherry, J. M. And Sherlock, G. (2004) GO::TermFinder-open source software for accessing gene ontology information and finding significantly enriched gene ontology terms associated with a list of genes. Bioinformatics, 20, 3710-3715.
-
(2004)
Bioinformatics
, vol.20
, pp. 3710-3715
-
-
Boyle, E.I.1
Weng, S.A.2
Gollub, J.3
Jin, H.4
Botstein, D.5
Cherry, J.M.6
Sherlock, G.7
-
48
-
-
78651271733
-
Integrative genomics viewer
-
Robinson, J. T., Thorvaldsdottir, H., Winckler, W., Guttman, M., Lander, E. S., Getz, G. And Mesirov, J. P. (2011) Integrative genomics viewer. Nat. Biotechnol., 29, 24-26.
-
(2011)
Nat. Biotechnol.
, vol.29
, pp. 24-26
-
-
Robinson, J.T.1
Thorvaldsdottir, H.2
Winckler, W.3
Guttman, M.4
Lander, E.S.5
Getz, G.6
Mesirov, J.P.7
-
49
-
-
57649198454
-
DUSP6 (MKP3) null mice show enhanced ERK1/2 phosphorylation at baseline and increased myocyte proliferation in the heart affecting disease susceptibility
-
Maillet, M., Purcell, N. H., Sargent, M. A., York, A. J., Bueno, O. F. And Molkentin, J. D. (2008) DUSP6 (MKP3) null mice show enhanced ERK1/2 phosphorylation at baseline and increased myocyte proliferation in the heart affecting disease susceptibility. J. Biol. Chem., 283, 31246-31255.
-
(2008)
J. Biol. Chem.
, vol.283
, pp. 31246-31255
-
-
Maillet, M.1
Purcell, N.H.2
Sargent, M.A.3
York, A.J.4
Bueno, O.F.5
Molkentin, J.D.6
-
50
-
-
84866348825
-
Six1 regulates stem cell repair potential and self-renewal during skeletal muscle regeneration
-
Le Grand, F., Grifone, R., Mourikis, P., Houbron, C., Gigaud, C., Pujol, J., Maillet, M., Pages, G., Rudnicki, M., Tajbakhsh, S. et al. (2012) Six1 regulates stem cell repair potential and self-renewal during skeletal muscle regeneration. J. Cell Biol., 198, 815-832.
-
(2012)
J. Cell Biol.
, vol.198
, pp. 815-832
-
-
Le Grand, F.1
Grifone, R.2
Mourikis, P.3
Houbron, C.4
Gigaud, C.5
Pujol, J.6
Maillet, M.7
Pages, G.8
Rudnicki, M.9
Tajbakhsh, S.10
-
51
-
-
0029773893
-
MEF2 protein expression, DNA binding specificity and complex composition, and transcriptional activity in muscle and non-muscle cells
-
Ornatsky, O. I. And McDermott, J. C. (1996) MEF2 protein expression, DNA binding specificity and complex composition, and transcriptional activity in muscle and non-muscle cells. J. Biol. Chem., 271, 24927-24933.
-
(1996)
J. Biol. Chem.
, vol.271
, pp. 24927-24933
-
-
Ornatsky, O.I.1
McDermott, J.C.2
-
52
-
-
0029905354
-
Differential regulation of the MAP, SAP and RK/p38 kinases by Pyst1, a novel cytosolic dual-specificity phosphatase
-
Groom, L. A., Sneddon, A. A., Alessi, D. R., Dowd, S. And Keyse, S. M. (1996) Differential regulation of the MAP, SAP and RK/p38 kinases by Pyst1, a novel cytosolic dual-specificity phosphatase. EMBO J., 15, 3621-3632.
-
(1996)
EMBO J.
, vol.15
, pp. 3621-3632
-
-
Groom, L.A.1
Sneddon, A.A.2
Alessi, D.R.3
Dowd, S.4
Keyse, S.M.5
-
53
-
-
0029910140
-
The dual specificity phosphatases M3/6 and MKP-3 are highly selective for inactivation of distinct mitogen-activated protein kinases
-
Muda, M., Theodosiou, A., Rodrigues, N., Boschert, U., Camps, M., Gillieron, C., Davies, K., Ashworth, A. And Arkinstall, S. (1996) The dual specificity phosphatases M3/6 and MKP-3 are highly selective for inactivation of distinct mitogen-activated protein kinases. J. Biol. Chem., 271, 27205-27208.
-
(1996)
J. Biol. Chem.
, vol.271
, pp. 27205-27208
-
-
Muda, M.1
Theodosiou, A.2
Rodrigues, N.3
Boschert, U.4
Camps, M.5
Gillieron, C.6
Davies, K.7
Ashworth, A.8
Arkinstall, S.9
-
54
-
-
33846472047
-
Dusp6 (Mkp3) is a negative feedback regulator of FGF-stimulated ERK signaling during mouse development
-
Li, C., Scott, D. A., Hatch, E., Tian, X. And Mansour, S. L. (2007) Dusp6 (Mkp3) is a negative feedback regulator of FGF-stimulated ERK signaling during mouse development. Development, 134, 167-176.
-
(2007)
Development
, vol.134
, pp. 167-176
-
-
Li, C.1
Scott, D.A.2
Hatch, E.3
Tian, X.4
Mansour, S.L.5
-
55
-
-
0031455587
-
A dominant-negative form of transcription factor MEF2 inhibits myogenesis
-
Ornatsky, O. I., Andreucci, J. J. And McDermott, J. C. (1997) A dominant-negative form of transcription factor MEF2 inhibits myogenesis. J. Biol. Chem., 272, 33271-33278.
-
(1997)
J. Biol. Chem.
, vol.272
, pp. 33271-33278
-
-
Ornatsky, O.I.1
Andreucci, J.J.2
McDermott, J.C.3
-
56
-
-
84872028640
-
A genome-wide RNAi screen reveals MAP kinase phosphatases as key ERK pathway regulators during embryonic stem cell differentiation
-
Yang, S., Kalkan, T., Morrisroe, C., Smith, A. And Sharrocks, A. D. (2012) A genome-wide RNAi screen reveals MAP kinase phosphatases as key ERK pathway regulators during embryonic stem cell differentiation. PLoS Genet., 8, e1003112.
-
(2012)
PLoS Genet.
, vol.8
, pp. e1003112
-
-
Yang, S.1
Kalkan, T.2
Morrisroe, C.3
Smith, A.4
Sharrocks, A.D.5
-
57
-
-
84874425321
-
Unrestrained p38 MAPK activation in Dusp1/4 double-null mice induces cardiomyopathy
-
Auger-Messier, M., Accornero, F., Goonasekera, S. A., Bueno, O. F., Lorenz, J. N., van Berlo, J. H., Willette, R. N. And Molkentin, J. D. (2012) Unrestrained p38 MAPK activation in Dusp1/4 double-null mice induces cardiomyopathy. Circ. Res., 112, 48-56.
-
(2012)
Circ. Res.
, vol.112
, pp. 48-56
-
-
Auger-Messier, M.1
Accornero, F.2
Goonasekera, S.A.3
Bueno, O.F.4
Lorenz, J.N.5
Van Berlo, J.H.6
Willette, R.N.7
Molkentin, J.D.8
-
58
-
-
0034067079
-
P38 and extracellular signal-regulated kinases regulate the myogenic program at multiple steps
-
Wu, Z., Woodring, P., Bhakta, K., Tamura, K., Wen, F., Feramisco, J., Karin, M., Wang, J. And Puri, P. (2000) P38 and extracellular signal-regulated kinases regulate the myogenic program at multiple steps. Mol. Cell. Biol., 20, 3951-3964.
-
(2000)
Mol. Cell. Biol.
, vol.20
, pp. 3951-3964
-
-
Wu, Z.1
Woodring, P.2
Bhakta, K.3
Tamura, K.4
Wen, F.5
Feramisco, J.6
Karin, M.7
Wang, J.8
Puri, P.9
-
59
-
-
0030722189
-
Regulation of distinct stages of skeletal muscle differentiation by mitogen-activated protein kinases
-
Bennett, A. M. And Tonks, N. K. (1997) Regulation of distinct stages of skeletal muscle differentiation by mitogen-activated protein kinases. Science, 278, 1288-1291.
-
(1997)
Science
, vol.278
, pp. 1288-1291
-
-
Bennett, A.M.1
Tonks, N.K.2
-
60
-
-
33744543239
-
ERK2 is required for efficient terminal differentiation of skeletal myoblasts
-
Li, J. And Johnson, S. E. (2006) ERK2 is required for efficient terminal differentiation of skeletal myoblasts. Biochem. Biophys. Res. Commun., 345, 1425-1433.
-
(2006)
Biochem. Biophys. Res. Commun.
, vol.345
, pp. 1425-1433
-
-
Li, J.1
Johnson, S.E.2
-
61
-
-
0033681541
-
Cabin1 represses MEF2-dependent Nur77 expression and T cell apoptosis by controlling association of histone deacetylases and acetylases with MEF2
-
Youn, H. D. And Liu, J. O. (2000) Cabin1 represses MEF2-dependent Nur77 expression and T cell apoptosis by controlling association of histone deacetylases and acetylases with MEF2. Immunity, 13, 85-94.
-
(2000)
Immunity
, vol.13
, pp. 85-94
-
-
Youn, H.D.1
Liu, J.O.2
-
62
-
-
0033568492
-
MEF-2 function is modified by a novel co-repressor, MITR
-
Sparrow, D. B., Miska, E. A., Langley, E., Reynaud-Deonauth, S., Kotecha, S., Towers, N., Spohr, G., Kouzarides, T. And Mohun, T. J. (1999) MEF-2 function is modified by a novel co-repressor, MITR. EMBO J., 18, 5085-5098.
-
(1999)
EMBO J.
, vol.18
, pp. 5085-5098
-
-
Sparrow, D.B.1
Miska, E.A.2
Langley, E.3
Reynaud-Deonauth, S.4
Kotecha, S.5
Towers, N.6
Spohr, G.7
Kouzarides, T.8
Mohun, T.J.9
-
63
-
-
84878870624
-
Homeodomain-interacting protein kinase 2-dependent repression of myogenic differentiation is relieved by its caspase-mediated cleavage
-
de la Vega, L., Hornung, J., Kremmer, E., Milanovic, M. And Schmitz, M. L. (2013) Homeodomain-interacting protein kinase 2-dependent repression of myogenic differentiation is relieved by its caspase-mediated cleavage. Nucleic Acids Res., 41, 5731-5745.
-
(2013)
Nucleic Acids Res.
, vol.41
, pp. 5731-5745
-
-
De La Vega, L.1
Hornung, J.2
Kremmer, E.3
Milanovic, M.4
Schmitz, M.L.5
-
64
-
-
67650520173
-
Protein kinase A-regulated assembly of a MEF2. HDAC4 repressor complex controls c-jun expression in vascular smooth muscle cells
-
Gordon, J. W., Pagiatakis, C., Salma, J., Du, M., Andreucci, J. J., Zhao, J., Hou, G., Perry, R. L., Dan, Q., Courtman, D. et al. (2009) Protein kinase A-regulated assembly of a MEF2. HDAC4 repressor complex controls c-jun expression in vascular smooth muscle cells. J. Biol. Chem., 284, 19027-19042.
-
(2009)
J. Biol. Chem.
, vol.284
, pp. 19027-19042
-
-
Gordon, J.W.1
Pagiatakis, C.2
Salma, J.3
Du, M.4
Andreucci, J.J.5
Zhao, J.6
Hou, G.7
Perry, R.L.8
Dan, Q.9
Courtman, D.10
-
65
-
-
0042170212
-
Inhibition of p38 MAPK signaling promotes late stages of myogenesis
-
Weston, A. D., Sampaio, A. V., Ridgeway, A. G. And Underhill, T. M. (2003) Inhibition of p38 MAPK signaling promotes late stages of myogenesis. J. Cell. Sci., 116, 2885-2893.
-
(2003)
J. Cell. Sci.
, vol.116
, pp. 2885-2893
-
-
Weston, A.D.1
Sampaio, A.V.2
Ridgeway, A.G.3
Underhill, T.M.4
-
66
-
-
33646858607
-
A temporal map of transcription factor activity: Mef2 directly regulates at all stages of muscle target genes development
-
Sandmann, T., Jensen, L. J., Jakobsen, J. S., Karzynski, M. M., Eichenlaub, M. P., Bork, P. And Furlong, E. E. M. (2006) A temporal map of transcription factor activity: Mef2 directly regulates at all stages of muscle target genes development. Dev. Cell, 10, 797-807.
-
(2006)
Dev. Cell
, vol.10
, pp. 797-807
-
-
Sandmann, T.1
Jensen, L.J.2
Jakobsen, J.S.3
Karzynski, M.M.4
Eichenlaub, M.P.5
Bork, P.6
Furlong, E.E.M.7
-
67
-
-
84890255267
-
Genome-wide analysis of histone marks identifying an epigenetic signature of promoters and enhancers underlying cardiac hypertrophy
-
Papait, R., Cattaneo, P., Kunderfranco, P., Greco, C., Carullo, P., Guffanti, A., Vigano, V., Stirparo, G. G., Latronico, M. V. G., Hasenfuss, G. et al. (2013) Genome-wide analysis of histone marks identifying an epigenetic signature of promoters and enhancers underlying cardiac hypertrophy. Proc. Natl. Acad. Sci. U. S. A., 110, 20164-20169.
-
(2013)
Proc. Natl. Acad. Sci. U. S. A.
, vol.110
, pp. 20164-20169
-
-
Papait, R.1
Cattaneo, P.2
Kunderfranco, P.3
Greco, C.4
Carullo, P.5
Guffanti, A.6
Vigano, V.7
Stirparo, G.G.8
Latronico, M.V.G.9
Hasenfuss, G.10
-
68
-
-
0026513957
-
Functional antagonism between C-jun and myod proteins-a direct physical association
-
Bengal, E., Ransone, L., Scharfmann, R., Dwarki, V. J., Tapscott, S. J., Weintraub, H. And Verma, I. M. (1992) Functional antagonism between C-jun and myod proteins-a direct physical association. Cell, 68, 507-519.
-
(1992)
Cell
, vol.68
, pp. 507-519
-
-
Bengal, E.1
Ransone, L.2
Scharfmann, R.3
Dwarki, V.J.4
Tapscott, S.J.5
Weintraub, H.6
Verma, I.M.7
-
69
-
-
0026606084
-
Fos and jun repress transcriptional activation by myogenin and myod-the amino terminus of jun can mediate repression
-
Li, L., Chambard, J. C., Karin, M. And Olson, E. N. (1992) Fos and jun repress transcriptional activation by myogenin and myod-the amino terminus of jun can mediate repression. Genes Dev., 6, 676-689.
-
(1992)
Genes Dev.
, vol.6
, pp. 676-689
-
-
Li, L.1
Chambard, J.C.2
Karin, M.3
Olson, E.N.4
-
70
-
-
84871603480
-
Genome-wide identification of enhancers in skeletal muscle: The role of MyoD1
-
Blum, R., Vethantham, V., Bowman, C., Rudnicki, M. And Dynlacht, B. D. (2012) Genome-wide identification of enhancers in skeletal muscle: The role of MyoD1. Genes Dev., 26, 2763-2779.
-
(2012)
Genes Dev.
, vol.26
, pp. 2763-2779
-
-
Blum, R.1
Vethantham, V.2
Bowman, C.3
Rudnicki, M.4
Dynlacht, B.D.5
|