Two color DNA barcode detection in photoluminescence suppressed silicon nitride nanopores

Nano Letters

Volumn 15, Issue 1, 2015, Pages 745-752

  Assad, Ossama N ^a   Di Fiori, Nicolas ^a   Squires, Allison H ^a   Meller, Amit ^a,b  

^a Boston University   (United States)

^b TECHNION ISRAEL INSTITUTE OF TECHNOLOGY   (Israel)

Author keywords

electron beam; optical detection; photoluminescence; silicon nitride; single molecule; Solid state nanopore

Indexed keywords

BAR CODES; DNA; DNA SEQUENCES; ELECTRON BEAMS; GENE ENCODING; MOLECULES; NANOPORES; NITRIDES; OPTICAL PROPERTIES; PHOTOLUMINESCENCE; SEMICONDUCTOR QUANTUM WELLS; SILICON; SILICON NITRIDE;

BACKGROUND SUPPRESSION; HIGH SIGNALTO-NOISE RATIOS (SNR); OPTICAL DETECTION; PHOTOCURRENT ENHANCEMENT; RED-LASER EXCITATION; SINGLE MOLECULE; SINGLE MOLECULE FLUORESCENCE DETECTION; SOLID-STATE NANOPORE;

SIGNAL TO NOISE RATIO;

ARTIFICIAL MEMBRANE; DNA;

ARTIFICIAL MEMBRANE; CHEMISTRY; LUMINESCENCE; NANOPORE; SIGNAL NOISE RATIO;

DNA; LUMINESCENT MEASUREMENTS; MEMBRANES, ARTIFICIAL; NANOPORES; SIGNAL-TO-NOISE RATIO;

EID: 84920973964     PISSN: 15306984     EISSN: 15306992     Source Type: Journal    
DOI: 10.1021/nl504459c     Document Type: Article

References (38)

1. Stoloff, D. H.; Wanunu, M. Curr. Opin. Biotechnol. 2013, 24 (4) 699-704
2. Meller, A. Nanopores: Single-Molecule Sensors of Nucleic Acid-based Complexes. In Advances in Chemical Physics; Rice, S. A.; Dinner, A. R., Eds.; Wiley: New York, 2012; Vol. 149.
3. Venkatesan, B. M.; Bashir, R. Nat. Nanotechnol. 2011, 6 (10) 615-624
4. Dekker, C. Nat. Nanotechnol. 2007, 2 (4) 209-215
5. Branton, D.; Deamer, D. W.; Marziali, A.; Bayley, H.; Benner, S. A.; Butler, T.; Di Ventra, M.; Garaj, S.; Hibbs, A.; Huang, X.; Jovanovich, S. B.; Krstic, P. S.; Lindsay, S.; Ling, X. S.; Mastrangelo, C. H.; Meller, A.; Oliver, J. S.; Pershin, Y. V.; Ramsey, J. M.; Riehn, R.; Soni, G. V.; Tabard-Cossa, V.; Wanunu, M.; Wiggin, M.; Schloss, J. A. Nat. Biotechnol. 2008, 26 (10) 1146-1153
6. Firnkes, M.; Pedone, D.; Knezevic, J.; Döblinger, M.; Rant, U. Nano Lett. 2010, 10 (6) 2162-2167
7. Yusko, E. C.; Johnson, J. M.; Majd, S.; Prangkio, P.; Rollings, R. C.; Li, J.; Yang, J.; Mayer, M. Nat. Nanotechnol. 2011, 6 (4) 253-260
8. Larkin, J.; Henley, R. Y.; Muthukumar, M.; Rosenstein, Jacob K.; Wanunu, M. Biophys. J. 2014, 106 (3) 696-704
9. Soni, V. G.; Singer, A.; Yu, Z.; Sun, Y.; McNally, B.; Meller, A. Rev. Sci. Instrum. 2010, 81 (1) 014301-7
10. McNally, B.; Singer, A.; Yu, Z.; Sun, Y.; Weng, Z.; Meller, A. Nano Lett. 2010, 10 (6) 2237-2244
11. Ivankin, A.; Henley, R. Y.; Larkin, J.; Carson, S.; Toscano, M. L.; Wanunu, M. ACS Nano 2014, 8 (10) 10774-10781
12. Anderson, B. N.; Assad, O. N.; Gilboa, T.; Squires, A. H.; Bar, D.; Meller, A. ACS Nano 2014, 8 (11) 11836-11845
13. Chansin, G. A.; Mulero, R.; Hong, J.; Kim, M. J.; DeMello, A. J.; Edel, J. B. Nano Lett. 2007, 7 (9) 2901-6
14. Deshpande, S. V.; Gulari, E.; Brown, S. W.; Rand, S. C. J. Appl. Phys. 1995, 77 (12) 6534-6541
15. Kim, B.-H.; Cho, C.-H.; Kim, T.-W.; Park, N.-M.; Sung, G. Y.; Park, S.-J. Appl. Phys. Lett. 2005, 86 (9) 091908
16. Kim, T.-W.; Cho, C.-H.; Kim, B.-H.; Park, S.-J. Appl. Phys. Lett. 2006, 88 (12) 123102
17. Park, N.-M.; Choi, C.-J.; Seong, T.-Y.; Park, S.-J. Phys. Rev. Lett. 2001, 86 (7) 1355-1357
18. Wang, M.; Li, D.; Yuan, Z.; Yang, D.; Que, D. Appl. Phys. Lett. 2007, 90 (13) 131903
19. Wang, Y. Q.; Wang, Y. G.; Cao, L.; Cao, Z. X. Appl. Phys. Lett. 2003, 83 (17) 3474-3476
20. Larkin, J.; Foquet, M.; Turner, S. W.; Korlach, J.; Wanunu, M. Nano Lett. 2014, 14 (10) 6023-6029
21. dela Torre, R.; Larkin, J.; Singer, A.; Meller, A. Nanotechnology 2012, 23 (38) 385308
22. Sawafta, F.; Clancy, B.; Carlsen, A. T.; Huber, M.; Hall, A. R. Nanoscale 2014, 6 (12) 6991-6996
23. Joo, C.; Balci, H.; Ishitsuka, Y.; Buranachai, C.; Ha, T. Annu. Rev. Biochem. 2008, 77 (1) 51-76
24. Di Fiori, N.; Squires, A.; Bar, D.; Gilboa, T.; Moustakas, T. D.; Meller, A. Nat. Nanotechnol. 2013, 8 (12) 946-951
25. Howitt, D. G.; Chen, S. J.; Gierhart, B. C.; Smith, R. L.; Collins, S. D. J. Appl. Phys. 2008, 103 (2) 024310
26. Li, J.; Stein, D.; McMullan, C.; Branton, D.; Aziz, M. J.; Golovchenko, J. A. Nature 2001, 412 (6843) 166-169
27. Huang, R.; Chen, K.; Han, P.; Dong, H.; Wang, X.; Chen, D.; Li, W.; Xu, J.; Ma, Z.; Huang, X. Appl. Phys. Lett. 2007, 90 (9) 093515
28. Huang, R.; Chen, K.; Qian, B.; Chen, S.; Li, W.; Xu, J.; Ma, Z.; Huang, X. Appl. Phys. Lett. 2006, 89 (22) 221120
29. McNally, B.; Wanunu, M.; Meller, A. Nano Lett. 2008, 8 (10) 3418-22
30. Kim, H. M.; Lee, M. H.; Kim, K. B. Nanotechnology 2011, 22 (27) 275303
31. Storm, A. J.; Chen, J. H.; Ling, X. S.; Zandbergen, H. W.; Dekker, C. Nat. Mater. 2003, 2 (8) 537-540
32. Zheng, H.; Liu, Y.; Cao, F.; Wu, S.; Jia, S.; Cao, A.; Zhao, D.; Wang, J. Sci. Rep. 2013, 3 (1920) 1-5
33. Kim, M. J.; Wanunu, M.; Bell, D. C.; Meller, A. Adv. Mater. 2006, 18 (23) 3149-3153
34. Kistner, J.; Chen, X.; Weng, Y.; Strunk, H. P.; Schubert, M. B.; Werner, J. H. J. Appl. Phys. 2011, 110 (2) 023520
35. Boulitrop, F.; Dunstan, D. J. Phys. Rev. B 1983, 28 (10) 5923-5929
36. Mo, C. m.; Zhang, L.; Xie, C.; Wang, T. J. Appl. Phys. 1993, 73 (10) 5185-5188
37. Dal Negro, L.; Yi, J. H.; Michel, J.; Kimerling, L. C.; Chang, T.-W. F.; Sukhovatkin, V.; Sargent, E. H. Appl. Phys. Lett. 2006, 88 (23) 233109
38. Yokota, T.; Murayama, M.; Howe, J. M. Phys. Rev. Lett. 2003, 91 (26) 265504