-
1
-
-
0036798824
-
Genetic dissection of mammalian fertility pathways
-
Matzuk MM, Lamb DJ. Genetic dissection of mammalian fertility pathways. Nat Cell Biol 2002; 4(suppl): s41-s49.
-
(2002)
Nat Cell Biol
, vol.4
, pp. s41-s49
-
-
Matzuk, M.M.1
Lamb, D.J.2
-
2
-
-
0036377472
-
Male germ cell gene expression
-
Eddy EM. Male germ cell gene expression. Recent Prog Horm Res 2002; 57:103-128.
-
(2002)
Recent Prog Horm Res
, vol.57
, pp. 103-128
-
-
Eddy, E.M.1
-
3
-
-
0028843116
-
Interactions between germ cells and Sertoli cells in the testis
-
Griswold MD. Interactions between germ cells and Sertoli cells in the testis. Biol Reprod 1995; 52:211-216.
-
(1995)
Biol Reprod
, vol.52
, pp. 211-216
-
-
Griswold, M.D.1
-
4
-
-
77952749815
-
Transcription and post-transcriptional regulation of spermatogenesis
-
Bettegowda A, Wilkinson MF. Transcription and post-transcriptional regulation of spermatogenesis. Philos Trans R Soc Lond B Biol Sci 2010; 365:1637-1651.
-
(2010)
Philos Trans R Soc Lond B Biol Sci
, vol.365
, pp. 1637-1651
-
-
Bettegowda, A.1
Wilkinson, M.F.2
-
6
-
-
34347242489
-
The conserved transcriptome in human and rodent male gametogenesis
-
Chalmel F, Rolland AD, Niederhauser-Wiederkehr C, Chung SSW, Demougin P, Gattiker A, Moore J, Patard J-J, Wolgemuth DJ, Jégou B, Primig M. The conserved transcriptome in human and rodent male gametogenesis. Proc Natl Acad Sci U S A 2007; 104:8346-8351.
-
(2007)
Proc Natl Acad Sci U S A
, vol.104
, pp. 8346-8351
-
-
Chalmel, F.1
Rolland, A.D.2
Niederhauser-Wiederkehr, C.3
Chung, S.S.W.4
Demougin, P.5
Gattiker, A.6
Moore, J.7
Patard, J-J.8
Wolgemuth, D.J.9
Jégou, B.10
Primig, M.11
-
7
-
-
84867813329
-
Global human tissue profiling and protein network analysis reveals distinct levels of transcriptional germline-specificity and identifies target genes for male infertility
-
Chalmel F, Lardenois A, Evrard B, Mathieu R, Feig C, Demougin P, Gattiker A, Schulze W, Jégou B, Kirchhoff C, Primig M. Global human tissue profiling and protein network analysis reveals distinct levels of transcriptional germline-specificity and identifies target genes for male infertility. Hum Reprod 2012; 27:3233-3248.
-
(2012)
Hum Reprod
, vol.27
, pp. 3233-3248
-
-
Chalmel, F.1
Lardenois, A.2
Evrard, B.3
Mathieu, R.4
Feig, C.5
Demougin, P.6
Gattiker, A.7
Schulze, W.8
Jégou, B.9
Kirchhoff, C.10
Primig, M.11
-
8
-
-
1542373752
-
Expression profiling of mammalian male meiosis and gametogenesis identifies novel candidate genes for roles in the regulation of fertility
-
Schlecht U, Demougin P, Koch R, Hermida L, Wiederkehr C, Descombes P, Pineau C, Jégou B, Primig M. Expression profiling of mammalian male meiosis and gametogenesis identifies novel candidate genes for roles in the regulation of fertility. Mol Biol Cell 2004; 15:1031-1043.
-
(2004)
Mol Biol Cell
, vol.15
, pp. 1031-1043
-
-
Schlecht, U.1
Demougin, P.2
Koch, R.3
Hermida, L.4
Wiederkehr, C.5
Descombes, P.6
Pineau, C.7
Jégou, B.8
Primig, M.9
-
9
-
-
0142091380
-
A multitude of genes expressed solely in meiotic or postmeiotic spermatogenic cells offers a myriad of contraceptive targets
-
Schultz N, Hamra FK, Garbers DL. A multitude of genes expressed solely in meiotic or postmeiotic spermatogenic cells offers a myriad of contraceptive targets. Proc Natl Acad Sci U S A 2003; 100:12201-12206.
-
(2003)
Proc Natl Acad Sci U S A
, vol.100
, pp. 12201-12206
-
-
Schultz, N.1
Hamra, F.K.2
Garbers, D.L.3
-
10
-
-
3142769033
-
The murine testicular transcriptome: characterizing gene expression in the testis during the progression of spermatogenesis
-
Shima JE, McLean DJ, McCarrey JR, Griswold MD. The murine testicular transcriptome: characterizing gene expression in the testis during the progression of spermatogenesis. Biol Reprod 2004; 71:319-330.
-
(2004)
Biol Reprod
, vol.71
, pp. 319-330
-
-
Shima, J.E.1
McLean, D.J.2
McCarrey, J.R.3
Griswold, M.D.4
-
11
-
-
15544377784
-
Database of mRNA gene expression profiles of multiple human organs
-
Son CG, Bilke S, Davis S, Greer BT, Wei JS, Whiteford CC, Chen Q-R, Cenacchi N, Khan J. Database of mRNA gene expression profiles of multiple human organs. Genome Res 2005; 15:443-450.
-
(2005)
Genome Res
, vol.15
, pp. 443-450
-
-
Son, C.G.1
Bilke, S.2
Davis, S.3
Greer, B.T.4
Wei, J.S.5
Whiteford, C.C.6
Chen, Q-R.7
Cenacchi, N.8
Khan, J.9
-
12
-
-
12744268424
-
Mammalian male germ cells are fertile ground for expression profiling of sexual reproduction
-
Wrobel G, Primig M. Mammalian male germ cells are fertile ground for expression profiling of sexual reproduction. Reproduction 2005; 129:1-7.
-
(2005)
Reproduction
, vol.129
, pp. 1-7
-
-
Wrobel, G.1
Primig, M.2
-
13
-
-
84904440021
-
High-resolution profiling of novel transcribed regions during rat spermatogenesis
-
Chalmel F, Lardenois A, Evrard B, Rolland AD, Sallou O, Dumargne MC, Coiffec I, Collin O, Primig M, Jégou B. High-resolution profiling of novel transcribed regions during rat spermatogenesis. Biol Reprod 2014; 91:5.
-
(2014)
Biol Reprod
, vol.91
, pp. 5
-
-
Chalmel, F.1
Lardenois, A.2
Evrard, B.3
Rolland, A.D.4
Sallou, O.5
Dumargne, M.C.6
Coiffec, I.7
Collin, O.8
Primig, M.9
Jégou, B.10
-
14
-
-
84876247905
-
Transcriptome profiling of the murine testis during the first wave of spermatogenesis
-
Laiho A, Kotaja N, Gyenesei A, Sironen A. Transcriptome profiling of the murine testis during the first wave of spermatogenesis. PLoS One 2013; 8: e61558.
-
(2013)
PLoS One
, vol.8
-
-
Laiho, A.1
Kotaja, N.2
Gyenesei, A.3
Sironen, A.4
-
15
-
-
84879795456
-
Cellular source and mechanisms of high transcriptome complexity in the mammalian testis
-
Soumillon M, Necsulea A, Weier M, Brawand D, Zhang X, Gu H, Barthes P, Kokkinaki M, Nef S, Gnirke A, Dym M, de Massy B, et al. Cellular source and mechanisms of high transcriptome complexity in the mammalian testis. Cell Rep 2013; 3:2179-2190.
-
(2013)
Cell Rep
, vol.3
, pp. 2179-2190
-
-
Soumillon, M.1
Necsulea, A.2
Weier, M.3
Brawand, D.4
Zhang, X.5
Gu, H.6
Barthes, P.7
Kokkinaki, M.8
Nef, S.9
Gnirke, A.10
Dym, M.11
de Massy, B.12
-
16
-
-
84877597520
-
Integrative proteomic and transcriptomic analyses reveal multiple post-transcriptional regulatory mechanisms of mouse spermatogenesis
-
Gan H, Cai T, Lin X, Wu Y, Wang X, Yang F, Han C. Integrative proteomic and transcriptomic analyses reveal multiple post-transcriptional regulatory mechanisms of mouse spermatogenesis. Mol Cell Proteomics 2013; 12:1144-1157.
-
(2013)
Mol Cell Proteomics
, vol.12
, pp. 1144-1157
-
-
Gan, H.1
Cai, T.2
Lin, X.3
Wu, Y.4
Wang, X.5
Yang, F.6
Han, C.7
-
17
-
-
84892472737
-
Integrated transcriptome analysis of mouse spermatogenesis
-
Margolin G, Khil PP, Kim J, Bellani MA, Camerini-Otero RD. Integrated transcriptome analysis of mouse spermatogenesis. BMC Genomics 2014; 15:39.
-
(2014)
BMC Genomics
, vol.15
, pp. 39
-
-
Margolin, G.1
Khil, P.P.2
Kim, J.3
Bellani, M.A.4
Camerini-Otero, R.D.5
-
18
-
-
84896538092
-
An atlas of chromatoid body components
-
Meikar O, Vagin VV, Chalmel F, Sõstar K, Lardenois A, Hammell M, Jin Y, Da Ros M, Wasik KA, Toppari J, Hannon GJ, Kotaja N. An atlas of chromatoid body components. RNA 2014; 20:483-495.
-
(2014)
RNA
, vol.20
, pp. 483-495
-
-
Meikar, O.1
Vagin, V.V.2
Chalmel, F.3
Sõstar, K.4
Lardenois, A.5
Hammell, M.6
Jin, Y.7
Da Ros, M.8
Wasik, K.A.9
Toppari, J.10
Hannon, G.J.11
Kotaja, N.12
-
19
-
-
84900534933
-
The human testis-specific proteome defined by transcriptomics and antibody-based profiling
-
Djureinovic D, Fagerberg L, Hallström B, Danielsson A, Lindskog C, Uhlén M, Pontén F. The human testis-specific proteome defined by transcriptomics and antibody-based profiling. Mol Hum Reprod 2014; 20: 476-488.
-
(2014)
Mol Hum Reprod
, vol.20
, pp. 476-488
-
-
Djureinovic, D.1
Fagerberg, L.2
Hallström, B.3
Danielsson, A.4
Lindskog, C.5
Uhlén, M.6
Pontén, F.7
-
20
-
-
84890322979
-
The splicing landscape is globally reprogrammed during male meiosis
-
Schmid R, Grellscheid SN, Ehrmann I, Dalgliesh C, Danilenko M, Paronetto MP, Pedrotti S, Grellscheid D, Dixon RJ, Sette C, Eperon IC, Elliott DJ. The splicing landscape is globally reprogrammed during male meiosis. Nucleic Acids Res 2013; 41:10170-10184.
-
(2013)
Nucleic Acids Res
, vol.41
, pp. 10170-10184
-
-
Schmid, R.1
Grellscheid, S.N.2
Ehrmann, I.3
Dalgliesh, C.4
Danilenko, M.5
Paronetto, M.P.6
Pedrotti, S.7
Grellscheid, D.8
Dixon, R.J.9
Sette, C.10
Eperon, I.C.11
Elliott, D.J.12
-
21
-
-
7444260846
-
The ENCODE (ENCyclopedia Of DNA Elements) project
-
ENCODE Project Consortium. The ENCODE (ENCyclopedia Of DNA Elements) project. Science 2004; 306:636-640.
-
(2004)
Science
, vol.306
, pp. 636-640
-
-
-
22
-
-
84865727393
-
The GENCODE v7 catalog of human long noncoding RNAs: analysis of their gene structure, evolution, and expression
-
Derrien T, Johnson R, Bussotti G, Tanzer A, Djebali S, Tilgner H, Guernec G, Martin D, Merkel A, Knowles DG, Lagarde J, Veeravalli L, et al. The GENCODE v7 catalog of human long noncoding RNAs: analysis of their gene structure, evolution, and expression. Genome Res 2012; 22: 1775-1789.
-
(2012)
Genome Res
, vol.22
, pp. 1775-1789
-
-
Derrien, T.1
Johnson, R.2
Bussotti, G.3
Tanzer, A.4
Djebali, S.5
Tilgner, H.6
Guernec, G.7
Martin, D.8
Merkel, A.9
Knowles, D.G.10
Lagarde, J.11
Veeravalli, L.12
-
23
-
-
78649339069
-
Long noncoding RNA in genome regulation: prospects and mechanisms
-
Hung T, Chang HY. Long noncoding RNA in genome regulation: prospects and mechanisms. RNA Biol 2010; 7:582-585.
-
(2010)
RNA Biol
, vol.7
, pp. 582-585
-
-
Hung, T.1
Chang, H.Y.2
-
24
-
-
84865839598
-
Long noncoding RNAs are rarely translated in two human cell lines
-
Bánfai B, Jia H, Khatun J, Wood E, Risk B, Gundling WE Jr, Kundaje A, Gunawardena HP, Yu Y, Xie L, Krajewski K, Strahl BD, et al. Long noncoding RNAs are rarely translated in two human cell lines. Genome Res 2012; 22:1646-1657.
-
(2012)
Genome Res
, vol.22
, pp. 1646-1657
-
-
Bánfai, B.1
Jia, H.2
Khatun, J.3
Wood, E.4
Risk, B.5
Gundling, W.E.6
Kundaje, A.7
Gunawardena, H.P.8
Yu, Y.9
Xie, L.10
Krajewski, K.11
Strahl, B.D.12
-
25
-
-
80052978224
-
Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses
-
Cabili MN, Trapnell C, Goff L, Koziol M, Tazon-Vega B, Regev A, Rinn JL. Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses. Genes Dev 2011; 25: 1915-1927.
-
(2011)
Genes Dev
, vol.25
, pp. 1915-1927
-
-
Cabili, M.N.1
Trapnell, C.2
Goff, L.3
Koziol, M.4
Tazon-Vega, B.5
Regev, A.6
Rinn, J.L.7
-
26
-
-
62249133709
-
Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals
-
Guttman M, Amit I, Garber M, French C, Lin MF, Feldser D, Huarte M, Zuk O, Carey BW, Cassady JP, Cabili MN, Jaenisch R, et al. Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals. Nature 2009; 458:223-227.
-
(2009)
Nature
, vol.458
, pp. 223-227
-
-
Guttman, M.1
Amit, I.2
Garber, M.3
French, C.4
Lin, M.F.5
Feldser, D.6
Huarte, M.7
Zuk, O.8
Carey, B.W.9
Cassady, J.P.10
Cabili, M.N.11
Jaenisch, R.12
-
27
-
-
77952148742
-
Ab initio reconstruction of cell type-specific transcriptomes in mouse reveals the conserved multi-exonic structure of lincRNAs
-
Guttman M, Garber M, Levin JZ, Donaghey J, Robinson J, Adiconis X, Fan L, Koziol MJ, Gnirke A, Nusbaum C, Rinn JL, Lander ES, et al. Ab initio reconstruction of cell type-specific transcriptomes in mouse reveals the conserved multi-exonic structure of lincRNAs. Nat Biotechnol 2010; 28:503-510.
-
(2010)
Nat Biotechnol
, vol.28
, pp. 503-510
-
-
Guttman, M.1
Garber, M.2
Levin, J.Z.3
Donaghey, J.4
Robinson, J.5
Adiconis, X.6
Fan, L.7
Koziol, M.J.8
Gnirke, A.9
Nusbaum, C.10
Rinn, J.L.11
Lander, E.S.12
-
28
-
-
80052869283
-
lincRNAs act in the circuitry controlling pluripotency and differentiation
-
Guttman M, Donaghey J, Carey BW, Garber M, Grenier JK, Munson G, Young G, Lucas AB, Ach R, Bruhn L, Yang X, Amit I, et al. lincRNAs act in the circuitry controlling pluripotency and differentiation. Nature 2011; 477:295-300.
-
(2011)
Nature
, vol.477
, pp. 295-300
-
-
Guttman, M.1
Donaghey, J.2
Carey, B.W.3
Garber, M.4
Grenier, J.K.5
Munson, G.6
Young, G.7
Lucas, A.B.8
Ach, R.9
Bruhn, L.10
Yang, X.11
Amit, I.12
-
29
-
-
84857836107
-
Systematic identification of long noncoding RNAs expressed during zebrafish embryogenesis
-
Pauli A, Valen E, Lin MF, Garber M, Vastenhouw NL, Levin JZ, Fan L, Sandelin A, Rinn JL, Regev A, Schier AF. Systematic identification of long noncoding RNAs expressed during zebrafish embryogenesis. Genome Res 2012; 22:577-591.
-
(2012)
Genome Res
, vol.22
, pp. 577-591
-
-
Pauli, A.1
Valen, E.2
Lin, M.F.3
Garber, M.4
Vastenhouw, N.L.5
Levin, J.Z.6
Fan, L.7
Sandelin, A.8
Rinn, J.L.9
Regev, A.10
Schier, A.F.11
-
30
-
-
84870848593
-
De novo derivation of proteomes from transcriptomes for transcript and protein identification
-
Evans VC, Barker G, Heesom KJ, Fan J, Bessant C, Matthews DA. De novo derivation of proteomes from transcriptomes for transcript and protein identification. Nat Methods 2012; 9:1207-1211.
-
(2012)
Nat Methods
, vol.9
, pp. 1207-1211
-
-
Evans, V.C.1
Barker, G.2
Heesom, K.J.3
Fan, J.4
Bessant, C.5
Matthews, D.A.6
-
31
-
-
78649844980
-
Proteomics technologies for the global identifica- tion and quantification of proteins
-
Brewis IA, Brennan P. Proteomics technologies for the global identifica- tion and quantification of proteins. Adv Protein Chem Struct Biol 2010; 80:1-44.
-
(2010)
Adv Protein Chem Struct Biol
, vol.80
, pp. 1-44
-
-
Brewis, I.A.1
Brennan, P.2
-
32
-
-
84857985823
-
Advancing cell biology through proteomics in space and time (PROSPECTS)
-
O112.017731
-
Lamond AI, Uhlen M, Horning S, Makarov A, Robinson CV, Serrano L, Hartl FU, Baumeister W, Werenskiold AK, Andersen JS, Vorm O, Linial M, et al. Advancing cell biology through proteomics in space and time (PROSPECTS). Mol Cell Proteomics 2012; 11:O112.017731.
-
(2012)
Mol Cell Proteomics
, vol.11
-
-
Lamond, A.I.1
Uhlen, M.2
Horning, S.3
Makarov, A.4
Robinson, C.V.5
Serrano, L.6
Hartl, F.U.7
Baumeister, W.8
Werenskiold, A.K.9
Andersen, J.S.10
Vorm, O.11
Linial, M.12
-
33
-
-
84891783174
-
Activities at the Universal Protein Resource (UniProt)
-
The UniProt Consortium. Activities at the Universal Protein Resource (UniProt). Nucleic Acids Res 2014; 42:D191-D198.
-
(2014)
Nucleic Acids Res
, vol.42
, pp. D191-D198
-
-
-
34
-
-
84863011504
-
Protein identification using customized protein sequence databases derived from RNA-Seq data
-
Wang X, Slebos RJC, Wang D, Halvey PJ, Tabb DL, Liebler DC, Zhang B. Protein identification using customized protein sequence databases derived from RNA-Seq data. J Proteome Res 2012; 11:1009-1017.
-
(2012)
J Proteome Res
, vol.11
, pp. 1009-1017
-
-
Wang, X.1
Slebos, R.J.C.2
Wang, D.3
Halvey, P.J.4
Tabb, D.L.5
Liebler, D.C.6
Zhang, B.7
-
35
-
-
57749195712
-
RNA-Seq: a revolutionary tool for transcriptomics
-
Wang Z, Gerstein M, Snyder M. RNA-Seq: a revolutionary tool for transcriptomics. Nat Rev Genet 2009; 10:57-63.
-
(2009)
Nat Rev Genet
, vol.10
, pp. 57-63
-
-
Wang, Z.1
Gerstein, M.2
Snyder, M.3
-
36
-
-
84881094423
-
Discovery and mass spectrometric analysis of novel splice-junction peptides using RNA-Seq
-
Sheynkman GM, Shortreed MR, Frey BL, Smith LM. Discovery and mass spectrometric analysis of novel splice-junction peptides using RNA-Seq. Mol Cell Proteomics 2013; 12:2341-2353.
-
(2013)
Mol Cell Proteomics
, vol.12
, pp. 2341-2353
-
-
Sheynkman, G.M.1
Shortreed, M.R.2
Frey, B.L.3
Smith, L.M.4
-
37
-
-
84891801883
-
Proteogenomic database construction driven from large scale RNA-seq data
-
Woo S, Cha SW, Merrihew G, He Y, Castellana N, Guest C, MacCoss M, Bafna V. Proteogenomic database construction driven from large scale RNA-seq data. J Proteome Res 2014; 13:21-28.
-
(2014)
J Proteome Res
, vol.13
, pp. 21-28
-
-
Woo, S.1
Cha, S.W.2
Merrihew, G.3
He, Y.4
Castellana, N.5
Guest, C.6
MacCoss, M.7
Bafna, V.8
-
38
-
-
0027199203
-
Germ cellconditioned medium contains multiple factors that modulate the secretion of testins, clusterin, and transferrin by Sertoli cells
-
Pineau C, Syed V, Bardin CW, Jégou B, Cheng CY. Germ cellconditioned medium contains multiple factors that modulate the secretion of testins, clusterin, and transferrin by Sertoli cells. J Androl 1993; 14: 87-98.
-
(1993)
J Androl
, vol.14
, pp. 87-98
-
-
Pineau, C.1
Syed, V.2
Bardin, C.W.3
Jégou, B.4
Cheng, C.Y.5
-
39
-
-
1242305110
-
New insights into the rat spermatogonial proteome
-
Com E, Evrard B, Roepstorff P, Aubry F, Pineau C. New insights into the rat spermatogonial proteome. Mol Cell Proteomics 2003; 2:248-261.
-
(2003)
Mol Cell Proteomics
, vol.2
, pp. 248-261
-
-
Com, E.1
Evrard, B.2
Roepstorff, P.3
Aubry, F.4
Pineau, C.5
-
40
-
-
0022181108
-
Structural characterization of proteoglycans produced by testicular peritubular cells and Sertoli cells
-
Skinner MK, Fritz IB. Structural characterization of proteoglycans produced by testicular peritubular cells and Sertoli cells. J Biol Chem 1985; 260:11874-11883.
-
(1985)
J Biol Chem
, vol.260
, pp. 11874-11883
-
-
Skinner, M.K.1
Fritz, I.B.2
-
41
-
-
0024451260
-
Effects of FSH and testosterone on highly purified rat Sertoli cells: inhibin alpha-subunit mRNA expression and inhibin secretion are enhanced by FSH but not by testosterone
-
Toebosch AM, Robertson DM, Klaij IA, de Jong FH, Grootegoed JA. Effects of FSH and testosterone on highly purified rat Sertoli cells: inhibin alpha-subunit mRNA expression and inhibin secretion are enhanced by FSH but not by testosterone. J Endocrinol 1989; 122:757-762.
-
(1989)
J Endocrinol
, vol.122
, pp. 757-762
-
-
Toebosch, A.M.1
Robertson, D.M.2
Klaij, I.A.3
de Jong, F.H.4
Grootegoed, J.A.5
-
42
-
-
84875391572
-
Ensembl 2013
-
Flicek P, Ahmed I, Amode MR, Barrell D, Beal K, Brent S, Carvalho- Silva D, Clapham P, Coates G, Fairley S, Fitzgerald S, Gil L, et al. Ensembl 2013. Nucleic Acids Res 2013; 41:D48-D55.
-
(2013)
Nucleic Acids Res
, vol.41
, pp. D48-D55
-
-
Flicek, P.1
Ahmed, I.2
Amode, M.R.3
Barrell, D.4
Beal, K.5
Brent, S.6
Carvalho-Silva, D.7
Clapham, P.8
Coates, G.9
Fairley, S.10
Fitzgerald, S.11
Gil, L.12
-
43
-
-
84859436530
-
NCBI Reference Sequences (RefSeq): current status, new features and genome annotation policy
-
Pruitt KD, Tatusova T, Brown GR, Maglott DR. NCBI Reference Sequences (RefSeq): current status, new features and genome annotation policy. Nucleic Acids Res 2012; 40:D130-D135.
-
(2012)
Nucleic Acids Res
, vol.40
, pp. D130-D135
-
-
Pruitt, K.D.1
Tatusova, T.2
Brown, G.R.3
Maglott, D.R.4
-
44
-
-
33748486517
-
AceView: a comprehensive cDNAsupported gene and transcripts annotation
-
Thierry-Mieg D, Thierry-Mieg J. AceView: a comprehensive cDNAsupported gene and transcripts annotation. Genome Biol 2006; 7(Suppl 1): S12.1-14.
-
(2006)
Genome Biol
, vol.7
, pp. S121-S124
-
-
Thierry-Mieg, D.1
Thierry-Mieg, J.2
-
45
-
-
84875404794
-
The UCSC Genome Browser database: extensions and updates 2013
-
Meyer LR, Zweig AS, Hinrichs AS, Karolchik D, Kuhn RM, Wong M, Sloan CA, Rosenbloom KR, Roe G, Rhead B, Raney BJ, Pohl A, et al. The UCSC Genome Browser database: extensions and updates 2013. Nucleic Acids Res 2013; 41:D64-D69.
-
(2013)
Nucleic Acids Res
, vol.41
, pp. D64-D69
-
-
Meyer, L.R.1
Zweig, A.S.2
Hinrichs, A.S.3
Karolchik, D.4
Kuhn, R.M.5
Wong, M.6
Sloan, C.A.7
Rosenbloom, K.R.8
Roe, G.9
Rhead, B.10
Raney, B.J.11
Pohl, A.12
-
46
-
-
84859885816
-
Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks
-
Trapnell C, Roberts A, Goff L, Pertea G, Kim D, Kelley DR, Pimentel H, Salzberg SL, Rinn JL, Pachter L. Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks. Nat Protoc 2012; 7:562-578.
-
(2012)
Nat Protoc
, vol.7
, pp. 562-578
-
-
Trapnell, C.1
Roberts, A.2
Goff, L.3
Pertea, G.4
Kim, D.5
Kelley, D.R.6
Pimentel, H.7
Salzberg, S.L.8
Rinn, J.L.9
Pachter, L.10
-
47
-
-
65449136284
-
TopHat: discovering splice junctions with RNA-Seq
-
Trapnell C, Pachter L, Salzberg SL. TopHat: discovering splice junctions with RNA-Seq. Bioinformatics 2009; 25:1105-1111.
-
(2009)
Bioinformatics
, vol.25
, pp. 1105-1111
-
-
Trapnell, C.1
Pachter, L.2
Salzberg, S.L.3
-
48
-
-
77952123055
-
Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation
-
Trapnell C, Williams BA, Pertea G, Mortazavi A, Kwan G, van Baren MJ, Salzberg SL, Wold BJ, Pachter L. Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation. Nat Biotechnol 2010; 28:511-515.
-
(2010)
Nat Biotechnol
, vol.28
, pp. 511-515
-
-
Trapnell, C.1
Williams, B.A.2
Pertea, G.3
Mortazavi, A.4
Kwan, G.5
van Baren, M.J.6
Salzberg, S.L.7
Wold, B.J.8
Pachter, L.9
-
49
-
-
0034201441
-
EMBOSS: the European Molecular Biology Open Software Suite
-
Rice P, Longden I, Bleasby A. EMBOSS: the European Molecular Biology Open Software Suite. Trends Genet 2000; 16:276-277.
-
(2000)
Trends Genet
, vol.16
, pp. 276-277
-
-
Rice, P.1
Longden, I.2
Bleasby, A.3
-
50
-
-
84891768365
-
Ensembl 2014
-
Flicek P, Amode MR, Barrell D, Beal K, Billis K, Brent S, Carvalho-Silva D, Clapham P, Coates G, Fitzgerald S, Gil L, Girón CG, et al. Ensembl 2014. Nucleic Acids Res 2014; 42:D749-D755.
-
(2014)
Nucleic Acids Res
, vol.42
, pp. D749-D755
-
-
Flicek, P.1
Amode, M.R.2
Barrell, D.3
Beal, K.4
Billis, K.5
Brent, S.6
Carvalho-Silva, D.7
Clapham, P.8
Coates, G.9
Fitzgerald, S.10
Gil, L.11
Girón, C.G.12
-
51
-
-
84863036868
-
Direct iterative protein profiling (DIPP)-an innovative method for largescale protein detection applied to budding yeast mitosis
-
M111.012682
-
Lavigne R, Becker E, Liu Y, Evrard B, Lardenois A, Primig M, Pineau C. Direct iterative protein profiling (DIPP)-an innovative method for largescale protein detection applied to budding yeast mitosis. Mol Cell Proteomics 2012; 11:M111.012682.
-
(2012)
Mol Cell Proteomics
, vol.11
-
-
Lavigne, R.1
Becker, E.2
Liu, Y.3
Evrard, B.4
Lardenois, A.5
Primig, M.6
Pineau, C.7
-
52
-
-
41049095443
-
The Annotation, Mapping, Expression and Network (AMEN) suite of tools for molecular systems biology
-
Chalmel F, Primig M. The Annotation, Mapping, Expression and Network (AMEN) suite of tools for molecular systems biology. BMC Bioinformatics 2008; 9:86.
-
(2008)
BMC Bioinformatics
, vol.9
, pp. 86
-
-
Chalmel, F.1
Primig, M.2
-
53
-
-
4544341015
-
Linear models and empirical bayes methods for assessing differential expression in microarray experiments
-
Smyth GK. Linear models and empirical bayes methods for assessing differential expression in microarray experiments. Stat Appl Genet Mol Biol 2004; 3:Article3.
-
(2004)
Stat Appl Genet Mol Biol
, vol.3
-
-
Smyth, G.K.1
-
54
-
-
0025183708
-
Basic local alignment search tool
-
Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ. Basic local alignment search tool. J Mol Biol 1990; 215:403-410.
-
(1990)
J Mol Biol
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
55
-
-
9144233545
-
The EMBL Nucleotide Sequence Database
-
Kulikova T, Aldebert P, Althorpe N, Baker W, Bates K, Browne P, van den Broek A, Cochrane G, Duggan K, Eberhardt R, Faruque N, Garcia- Pastor M, et al. The EMBL Nucleotide Sequence Database. Nucleic Acids Res 2004; 32:D27-D30.
-
(2004)
Nucleic Acids Res
, vol.32
, pp. D27-D30
-
-
Kulikova, T.1
Aldebert, P.2
Althorpe, N.3
Baker, W.4
Bates, K.5
Browne, P.6
van den Broek, A.7
Cochrane, G.8
Duggan, K.9
Eberhardt, R.10
Faruque, N.11
Garcia-Pastor, M.12
-
56
-
-
84875619226
-
MAFFT multiple sequence alignment software version 7: improvements in performance and usability
-
Katoh K, Standley DM. MAFFT multiple sequence alignment software version 7: improvements in performance and usability. Mol Biol Evol 2013; 30:772-780.
-
(2013)
Mol Biol Evol
, vol.30
, pp. 772-780
-
-
Katoh, K.1
Standley, D.M.2
-
57
-
-
65449188232
-
Jalview version 2-a multiple sequence alignment editor and analysis workbench
-
Waterhouse AM, Procter JB, Martin DMA, Clamp M, Barton GJ. Jalview version 2-a multiple sequence alignment editor and analysis workbench. Bioinformatics 2009; 25:1189-1191.
-
(2009)
Bioinformatics
, vol.25
, pp. 1189-1191
-
-
Waterhouse, A.M.1
Procter, J.B.2
Martin, D.M.A.3
Clamp, M.4
Barton, G.J.5
-
58
-
-
3242887157
-
CD-Search: protein domain annotations on the fly
-
Marchler-Bauer A, Bryant SH. CD-Search: protein domain annotations on the fly. Nucleic Acids Res 2004; 32:W327-W331.
-
(2004)
Nucleic Acids Res
, vol.32
, pp. W327-W331
-
-
Marchler-Bauer, A.1
Bryant, S.H.2
-
59
-
-
78651285748
-
CDD: a Conserved Domain Database for the functional annotation of proteins
-
Marchler-Bauer A, Lu S, Anderson JB, Chitsaz F, Derbyshire MK, DeWeese-Scott C, Fong JH, Geer LY, Geer RC, Gonzales NR, Gwadz M, Hurwitz DI, et al. CDD: a Conserved Domain Database for the functional annotation of proteins. Nucleic Acids Res 2011; 39:D225-D229.
-
(2011)
Nucleic Acids Res
, vol.39
, pp. D225-D229
-
-
Marchler-Bauer, A.1
Lu, S.2
Anderson, J.B.3
Chitsaz, F.4
Derbyshire, M.K.5
DeWeese-Scott, C.6
Fong, J.H.7
Geer, L.Y.8
Geer, R.C.9
Gonzales, N.R.10
Gwadz, M.11
Hurwitz, D.I.12
-
60
-
-
48449106792
-
The Jpred 3 secondary structure prediction server
-
Cole C, Barber JD, Barton GJ. The Jpred 3 secondary structure prediction server. Nucleic Acids Res 2008; 36:W197-W201.
-
(2008)
Nucleic Acids Res
, vol.36
, pp. W197-W201
-
-
Cole, C.1
Barber, J.D.2
Barton, G.J.3
-
61
-
-
67049159445
-
CLPH, a novel casein kinase 2-phosphorylated disordered protein, is specifically associated with postmeiotic germ cells in rat spermatogenesis
-
Calvel P, Kervarrec C, Lavigne R, Vallet-Erdtmann V, Guerrois M, Rolland AD, Chalmel F, Jégou B, Pineau C. CLPH, a novel casein kinase 2-phosphorylated disordered protein, is specifically associated with postmeiotic germ cells in rat spermatogenesis. J Proteome Res 2009; 8: 2953-2965.
-
(2009)
J Proteome Res
, vol.8
, pp. 2953-2965
-
-
Calvel, P.1
Kervarrec, C.2
Lavigne, R.3
Vallet-Erdtmann, V.4
Guerrois, M.5
Rolland, A.D.6
Chalmel, F.7
Jégou, B.8
Pineau, C.9
-
62
-
-
0036226603
-
BLAT-the BLAST-like alignment tool
-
Kent WJ. BLAT-the BLAST-like alignment tool. Genome Res 2002; 12: 656-664.
-
(2002)
Genome Res
, vol.12
, pp. 656-664
-
-
Kent, W.J.1
-
63
-
-
50649118350
-
Long noncoding RNAs in mouse embryonic stem cell pluripotency and differentiation
-
Dinger ME, Amaral PP, Mercer TR, Pang KC, Bruce SJ, Gardiner BB, Askarian-Amiri ME, Ru K, Soldà G, Simons C, Sunkin SM, Crowe ML, et al. Long noncoding RNAs in mouse embryonic stem cell pluripotency and differentiation. Genome Res 2008; 18:1433-1445.
-
(2008)
Genome Res
, vol.18
, pp. 1433-1445
-
-
Dinger, M.E.1
Amaral, P.P.2
Mercer, T.R.3
Pang, K.C.4
Bruce, S.J.5
Gardiner, B.B.6
Askarian-Amiri, M.E.7
Ru, K.8
Soldà, G.9
Simons, C.10
Sunkin, S.M.11
Crowe, M.L.12
-
64
-
-
38649114329
-
Specific expression of long noncoding RNAs in the mouse brain
-
Mercer TR, Dinger ME, Sunkin SM, Mehler MF, Mattick JS. Specific expression of long noncoding RNAs in the mouse brain. Proc Natl Acad Sci U S A 2008; 105:716-721.
-
(2008)
Proc Natl Acad Sci U S A
, vol.105
, pp. 716-721
-
-
Mercer, T.R.1
Dinger, M.E.2
Sunkin, S.M.3
Mehler, M.F.4
Mattick, J.S.5
-
65
-
-
70149123708
-
Genomic and transcriptional co-localization of protein-coding and long non-coding RNA pairs in the developing brain
-
Ponjavic J, Oliver PL, Lunter G, Ponting CP. Genomic and transcriptional co-localization of protein-coding and long non-coding RNA pairs in the developing brain. PLoS Genet 2009; 5:e1000617.
-
(2009)
PLoS Genet
, vol.5
-
-
Ponjavic, J.1
Oliver, P.L.2
Lunter, G.3
Ponting, C.P.4
-
66
-
-
32044442759
-
Promoter features related to tissue specificity as measured by Shannon entropy
-
Schug J, Schuller W-P, Kappen C, Salbaum JM, Bucan M, Stoeckert CJ. Promoter features related to tissue specificity as measured by Shannon entropy. Genome Biol 2005; 6:R33.
-
(2005)
Genome Biol
, vol.6
, pp. R33
-
-
Schug, J.1
Schuller, W-P.2
Kappen, C.3
Salbaum, J.M.4
Bucan, M.5
Stoeckert, C.J.6
-
67
-
-
84879464665
-
Mass spectrometry and next-generation sequencing reveal an abundant and rapidly evolving abalone sperm protein
-
Palmer MR, McDowall MH, Stewart L, Ouaddi A, MacCoss MJ, Swanson WJ. Mass spectrometry and next-generation sequencing reveal an abundant and rapidly evolving abalone sperm protein. Mol Reprod Dev 2013; 80:460-465.
-
(2013)
Mol Reprod Dev
, vol.80
, pp. 460-465
-
-
Palmer, M.R.1
McDowall, M.H.2
Stewart, L.3
Ouaddi, A.4
MacCoss, M.J.5
Swanson, W.J.6
-
68
-
-
24644505259
-
Fewer genes, more noncoding RNA
-
Claverie J-M. Fewer genes, more noncoding RNA. Science 2005; 309: 1529-1530.
-
(2005)
Science
, vol.309
, pp. 1529-1530
-
-
Claverie, J-M.1
-
69
-
-
34250305146
-
Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project
-
ENCODE Project Consortium, Birney E, Stamatoyannopoulos JA, Dutta A, Guigó R, Gingeras TR, Margulies EH, Weng Z, Snyder M, Dermitzakis ET, Thurman RE, Kuehn MS, et al. Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project. Nature 2007; 447:799-816.
-
(2007)
Nature
, vol.447
, pp. 799-816
-
-
Birney, E.1
Stamatoyannopoulos, J.A.2
Dutta, A.3
Guigó, R.4
Gingeras, T.R.5
Margulies, E.H.6
Weng, Z.7
Snyder, M.8
Dermitzakis, E.T.9
Thurman, R.E.10
Kuehn, M.S.11
-
70
-
-
77957221582
-
A survey of computational methods and error rate estimation procedures for peptide and protein identification in shotgun proteomics
-
Nesvizhskii AI. A survey of computational methods and error rate estimation procedures for peptide and protein identification in shotgun proteomics. J Proteomics 2010; 73:2092-2123.
-
(2010)
J Proteomics
, vol.73
, pp. 2092-2123
-
-
Nesvizhskii, A.I.1
-
71
-
-
35848929694
-
Analysis and validation of proteomic data generated by tandem mass spectrometry
-
Nesvizhskii AI, Vitek O, Aebersold R. Analysis and validation of proteomic data generated by tandem mass spectrometry. Nat Methods 2007; 4:787-797.
-
(2007)
Nat Methods
, vol.4
, pp. 787-797
-
-
Nesvizhskii, A.I.1
Vitek, O.2
Aebersold, R.3
-
72
-
-
33745054329
-
Novel gene and gene model detection using a whole genome open reading frame analysis in proteomics
-
Fermin D, Allen BB, Blackwell TW, Menon R, Adamski M, Xu Y, Ulintz P, Omenn GS, States DJ. Novel gene and gene model detection using a whole genome open reading frame analysis in proteomics. Genome Biol 2006; 7:R35.
-
(2006)
Genome Biol
, vol.7
, pp. R35
-
-
Fermin, D.1
Allen, B.B.2
Blackwell, T.W.3
Menon, R.4
Adamski, M.5
Xu, Y.6
Ulintz, P.7
Omenn, G.S.8
States, D.J.9
-
73
-
-
33846133955
-
Computational prediction of proteotypic peptides for quantitative proteomics
-
Mallick P, Schirle M, Chen SS, Flory MR, Lee H, Martin D, Ranish J, Raught B, Schmitt R, Werner T, Kuster B, Aebersold R. Computational prediction of proteotypic peptides for quantitative proteomics. Nat Biotechnol 2007; 25:125-131.
-
(2007)
Nat Biotechnol
, vol.25
, pp. 125-131
-
-
Mallick, P.1
Schirle, M.2
Chen, S.S.3
Flory, M.R.4
Lee, H.5
Martin, D.6
Ranish, J.7
Raught, B.8
Schmitt, R.9
Werner, T.10
Kuster, B.11
Aebersold, R.12
-
74
-
-
79955555530
-
Shotgun proteomics aids discovery of novel protein-coding genes, alternative splicing, and ''resurrected'' pseudogenes in the mouse genome
-
Brosch M, Saunders GI, Frankish A, Collins MO, Yu L, Wright J, Verstraten R, Adams DJ, Harrow J, Choudhary JS, Hubbard T. Shotgun proteomics aids discovery of novel protein-coding genes, alternative splicing, and ''resurrected'' pseudogenes in the mouse genome. Genome Res 2011; 21:756-767.
-
(2011)
Genome Res
, vol.21
, pp. 756-767
-
-
Brosch, M.1
Saunders, G.I.2
Frankish, A.3
Collins, M.O.4
Yu, L.5
Wright, J.6
Verstraten, R.7
Adams, D.J.8
Harrow, J.9
Choudhary, J.S.10
Hubbard, T.11
-
75
-
-
79959875909
-
De novo assembly and validation of planaria transcriptome by massive parallel sequencing and shotgun proteomics
-
Adamidi C, Wang Y, Gruen D, Mastrobuoni G, You X, Tolle D, Dodt M, Mackowiak SD, Gogol-Doering A, Oenal P, Rybak A, Ross E, et al. De novo assembly and validation of planaria transcriptome by massive parallel sequencing and shotgun proteomics. Genome Res 2011; 21: 1193-1200.
-
(2011)
Genome Res
, vol.21
, pp. 1193-1200
-
-
Adamidi, C.1
Wang, Y.2
Gruen, D.3
Mastrobuoni, G.4
You, X.5
Tolle, D.6
Dodt, M.7
Mackowiak, S.D.8
Gogol-Doering, A.9
Oenal, P.10
Rybak, A.11
Ross, E.12
-
76
-
-
84901773142
-
Non-model organisms, a species endangered by proteogenomics
-
Armengaud J, Trapp J, Pible O, Geffard O, Chaumot A, Hartmann EM. Non-model organisms, a species endangered by proteogenomics. J Proteomics 2014; 105:5-18.
-
(2014)
J Proteomics
, vol.105
, pp. 5-18
-
-
Armengaud, J.1
Trapp, J.2
Pible, O.3
Geffard, O.4
Chaumot, A.5
Hartmann, E.M.6
-
77
-
-
84873948069
-
A de novo assembly of the newt transcriptome combined with proteomic validation identifies new protein families expressed during tissue regeneration
-
Looso M, Preussner J, Sousounis K, Bruckskotten M, Michel CS, Lignelli E, Reinhardt R, Höffner S, Krüger M, Tsonis PA, Borchardt T, Braun T. A de novo assembly of the newt transcriptome combined with proteomic validation identifies new protein families expressed during tissue regeneration. Genome Biol 2013; 14:R16.
-
(2013)
Genome Biol
, vol.14
, pp. R16
-
-
Looso, M.1
Preussner, J.2
Sousounis, K.3
Bruckskotten, M.4
Michel, C.S.5
Lignelli, E.6
Reinhardt, R.7
Höffner, S.8
Krüger, M.9
Tsonis, P.A.10
Borchardt, T.11
Braun, T.12
-
78
-
-
84901821265
-
Transcriptome and proteomic analysis of mango (Mangifera indica Linn) fruits
-
Wu H-X, Jia H-M, Ma X-W, Wang S-B, Yao Q-S, Xu W-T, Zhou Y-G, Gao Z-S, Zhan R-L. Transcriptome and proteomic analysis of mango (Mangifera indica Linn) fruits. J Proteomics 2014; 105:19-30.
-
(2014)
J Proteomics
, vol.105
, pp. 19-30
-
-
Wu, H-X.1
Jia, H-M.2
Ma, X-W.3
Wang, S-B.4
Yao, Q-S.5
Xu, W-T.6
Zhou, Y-G.7
Gao, Z-S.8
Zhan, R-L.9
-
79
-
-
57449088165
-
Proteomics studies confirm the presence of alternative protein isoforms on a large scale
-
Tress ML, Bodenmiller B, Aebersold R, Valencia A. Proteomics studies confirm the presence of alternative protein isoforms on a large scale. Genome Biol 2008; 9:R162.
-
(2008)
Genome Biol
, vol.9
, pp. R162
-
-
Tress, M.L.1
Bodenmiller, B.2
Aebersold, R.3
Valencia, A.4
-
80
-
-
77953231368
-
Dynamic regulation of alternative splicing and chromatin structure in Drosophila gonads revealed by RNA-seq
-
Gan Q, Chepelev I, Wei G, Tarayrah L, Cui K, Zhao K, Chen X. Dynamic regulation of alternative splicing and chromatin structure in Drosophila gonads revealed by RNA-seq. Cell Res 2010; 20:763-783.
-
(2010)
Cell Res
, vol.20
, pp. 763-783
-
-
Gan, Q.1
Chepelev, I.2
Wei, G.3
Tarayrah, L.4
Cui, K.5
Zhao, K.6
Chen, X.7
-
81
-
-
84862830326
-
Transcriptome landscape of the human placenta
-
Kim J, Zhao K, Jiang P, Lu Z, Wang J, Murray JC, Xing Y. Transcriptome landscape of the human placenta. BMC Genomics 2012; 13:115.
-
(2012)
BMC Genomics
, vol.13
, pp. 115
-
-
Kim, J.1
Zhao, K.2
Jiang, P.3
Lu, Z.4
Wang, J.5
Murray, J.C.6
Xing, Y.7
-
82
-
-
84885380065
-
Genomewide profiling of RNA splicing in prostate tumor from RNA-seq data using virtual microarrays
-
Srinivasan S, Patil AH, Verma M, Bingham JL, Srivatsan R. Genomewide profiling of RNA splicing in prostate tumor from RNA-seq data using virtual microarrays. J Clin Bioinforma 2012; 2:21.
-
(2012)
J Clin Bioinforma
, vol.2
, pp. 21
-
-
Srinivasan, S.1
Patil, A.H.2
Verma, M.3
Bingham, J.L.4
Srivatsan, R.5
-
83
-
-
84899847372
-
Discovery of novel genes and gene isoforms by integrating transcriptomic and proteomic profiling from mouse liver
-
Wu P, Zhang H, Lin W, Hao Y, Ren L, Zhang C, Li N, Wei H, Jiang Y, He F. Discovery of novel genes and gene isoforms by integrating transcriptomic and proteomic profiling from mouse liver. J Proteome Res 2014; 13:2409-2419.
-
(2014)
J Proteome Res
, vol.13
, pp. 2409-2419
-
-
Wu, P.1
Zhang, H.2
Lin, W.3
Hao, Y.4
Ren, L.5
Zhang, C.6
Li, N.7
Wei, H.8
Jiang, Y.9
He, F.10
-
85
-
-
0036182444
-
Enolase isoforms activities in spermatozoa from men with normospermia and abnormospermia
-
Force A, Viallard J-L, Grizard G, Boucher D. Enolase isoforms activities in spermatozoa from men with normospermia and abnormospermia. J Androl 2002; 23:202-210.
-
(2002)
J Androl
, vol.23
, pp. 202-210
-
-
Force, A.1
Viallard, J-L.2
Grizard, G.3
Boucher, D.4
-
86
-
-
4143071542
-
Electrophoretic characterization of the human sperm-specific enolase at different stages of maturation
-
Force A, Viallard J-L, Saez F, Grizard G, Boucher D. Electrophoretic characterization of the human sperm-specific enolase at different stages of maturation. J Androl 2004; 25:824-829.
-
(2004)
J Androl
, vol.25
, pp. 824-829
-
-
Force, A.1
Viallard, J-L.2
Saez, F.3
Grizard, G.4
Boucher, D.5
-
87
-
-
84877047443
-
Disruption of a spermatogenic cell-specific mouse enolase 4 (eno4) gene causes sperm structural defects and male infertility
-
1-12
-
Nakamura N, Dai Q, Williams J, Goulding EH, Willis WD, Brown PR, Eddy EM. Disruption of a spermatogenic cell-specific mouse enolase 4 (eno4) gene causes sperm structural defects and male infertility. Biol Reprod 2013; 88(4):90: 1-12.
-
(2013)
Biol Reprod
, vol.88
, Issue.4
, pp. 90
-
-
Nakamura, N.1
Dai, Q.2
Williams, J.3
Goulding, E.H.4
Willis, W.D.5
Brown, P.R.6
Eddy, E.M.7
-
88
-
-
0035399476
-
Longins: a new evolutionary conserved VAMP family sharing a novel SNARE domain
-
Filippini F, Rossi V, Galli T, Budillon A, D'Urso M, D'Esposito M. Longins: a new evolutionary conserved VAMP family sharing a novel SNARE domain. Trends Biochem Sci 2001; 26:407-409.
-
(2001)
Trends Biochem Sci
, vol.26
, pp. 407-409
-
-
Filippini, F.1
Rossi, V.2
Galli, T.3
Budillon, A.4
D'Urso, M.5
D'Esposito, M.6
-
89
-
-
70450224446
-
Multiple roles of the vesicular-SNARE TI-VAMP in post-Golgi and endosomal trafficking
-
Chaineau M, Danglot L, Galli T. Multiple roles of the vesicular-SNARE TI-VAMP in post-Golgi and endosomal trafficking. FEBS Lett 2009; 583: 3817-3826.
-
(2009)
FEBS Lett
, vol.583
, pp. 3817-3826
-
-
Chaineau, M.1
Danglot, L.2
Galli, T.3
-
90
-
-
8544275815
-
Longins and their longin domains: regulated SNAREs and multifunctional SNARE regulators
-
Rossi V, Banfield DK, Vacca M, Dietrich LEP, Ungermann C, D'Esposito M, Galli T, Filippini F. Longins and their longin domains: regulated SNAREs and multifunctional SNARE regulators. Trends Biochem Sci 2004; 29:682-688.
-
(2004)
Trends Biochem Sci
, vol.29
, pp. 682-688
-
-
Rossi, V.1
Banfield, D.K.2
Vacca, M.3
Dietrich, L.E.P.4
Ungermann, C.5
D'Esposito, M.6
Galli, T.7
Filippini, F.8
-
91
-
-
20144379204
-
Synaptotagmin VI and VIII and syntaxin 2 are essential for the mouse sperm acrosome reaction
-
Hutt DM, Baltz JM, Ngsee JK. Synaptotagmin VI and VIII and syntaxin 2 are essential for the mouse sperm acrosome reaction. J Biol Chem 2005; 280:20197-20203.
-
(2005)
J Biol Chem
, vol.280
, pp. 20197-20203
-
-
Hutt, D.M.1
Baltz, J.M.2
Ngsee, J.K.3
-
92
-
-
1942521152
-
Spatio-temporal organization of Vam6P and SNAP on mouse spermatozoa and their involvement in sperm-zona pellucida interactions
-
Brahmaraju M, Shoeb M, Laloraya M, Kumar PG. Spatio-temporal organization of Vam6P and SNAP on mouse spermatozoa and their involvement in sperm-zona pellucida interactions. Biochem Biophys Res Commun 2004; 318:148-155.
-
(2004)
Biochem Biophys Res Commun
, vol.318
, pp. 148-155
-
-
Brahmaraju, M.1
Shoeb, M.2
Laloraya, M.3
Kumar, P.G.4
-
93
-
-
0033762859
-
Localization of a syntaxin isoform, syntaxin 2, to the acrosomal region of rodent spermatozoa
-
Katafuchi K, Mori T, Toshimori K, Iida H. Localization of a syntaxin isoform, syntaxin 2, to the acrosomal region of rodent spermatozoa. Mol Reprod Dev 2000; 57:375-383.
-
(2000)
Mol Reprod Dev
, vol.57
, pp. 375-383
-
-
Katafuchi, K.1
Mori, T.2
Toshimori, K.3
Iida, H.4
-
94
-
-
80052615676
-
The role of VAMP7/TIVAMP in cell polarity and lysosomal exocytosis in vivo
-
Sato M, Yoshimura S, Hirai R, Goto A, Kunii M, Atik N, Sato T, Sato K, Harada R, Shimada J, Hatabu T, Yorifuji H, et al. The role of VAMP7/TIVAMP in cell polarity and lysosomal exocytosis in vivo. Traffic 2011; 12: 1383-1393.
-
(2011)
Traffic
, vol.12
, pp. 1383-1393
-
-
Sato, M.1
Yoshimura, S.2
Hirai, R.3
Goto, A.4
Kunii, M.5
Atik, N.6
Sato, T.7
Sato, K.8
Harada, R.9
Shimada, J.10
Hatabu, T.11
Yorifuji, H.12
-
96
-
-
62149148157
-
A VAMP7/Vti1a SNARE complex distinguishes a non-conventional traffic route to the cell surface used by KChIP1 and Kv4 potassium channels
-
Flowerdew SE, Burgoyne RD. A VAMP7/Vti1a SNARE complex distinguishes a non-conventional traffic route to the cell surface used by KChIP1 and Kv4 potassium channels. Biochem J 2009; 418:529-540.
-
(2009)
Biochem J
, vol.418
, pp. 529-540
-
-
Flowerdew, S.E.1
Burgoyne, R.D.2
-
97
-
-
0009732037
-
Definition of the stages of the cycle of the seminiferous epithelium in the rat
-
Leblond CP, Clermont Y. Definition of the stages of the cycle of the seminiferous epithelium in the rat. Ann N Y Acad Sci 1952; 55:548-573.
-
(1952)
Ann N Y Acad Sci
, vol.55
, pp. 548-573
-
-
Leblond, C.P.1
Clermont, Y.2
-
98
-
-
0014816754
-
Role of spermatogonia in the repair of the seminiferous epithelium following x-irradiation of the rat testis
-
Dym M, Clermont Y. Role of spermatogonia in the repair of the seminiferous epithelium following x-irradiation of the rat testis. Am J Anat 1970; 128:265-282.
-
(1970)
Am J Anat
, vol.128
, pp. 265-282
-
-
Dym, M.1
Clermont, Y.2
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