The EMBL nucleotide sequence database

Nucleic Acids Research

Volumn 32, Issue DATABASE ISS., 2004, Pages

  Kulikova, Tamara ^a   Aldebert, Philippe ^a   Althorpe, Nicola ^a   Baker, Wendy ^a   Bates, Kirsty ^a   Browne, Paul ^a   van den Broek, Alexandra ^a   Cochrane, Guy ^a   Duggan, Karyn ^a   Eberhardt, Ruth ^a   Faruque, Nadeem ^a   Garcia Pastor, Maria ^a   Harte, Nicola ^a   Kanz, Carola ^a   Leinonen, Rasko ^a   Lin, Quan ^a   Lombard, Vincent ^a   Lopez, Rodrigo ^a   Mancuso, Renato ^a   McHale, Michelle ^a   Nardone, Francesco ^a   Silventoinen, Ville ^a   Stoehr, Peter ^a   Stoesser, Guenter ^a   Tuli, Mary Ann ^a   Tzouvara, Katerina ^a   Vaughan, Robert ^a   Wu, Dan ^a   Zhu, Weimin ^a   Apweiler, Rolf ^a   more..

^a WELLCOME TRUST SANGER INSTITUTE   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

ACCESS TO INFORMATION; ARTICLE; AUTOMATION; BIOINFORMATICS; COMPUTER INTERFACE; DNA DATA BANK OF JAPAN; E-MAIL; EMBL NUCLEOTIDE SEQUENCE DATABASE; GENBANK; GENE SEQUENCE; GENETIC DATABASE; HUMAN; INFORMATION RETRIEVAL; INTERNET; MOLECULAR BIOLOGY; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; PROTEIN DATABASE; SEQUENCE ALIGNMENT; SEQUENCE HOMOLOGY; UNITED STATES;

ANIMALS; DATABASES, NUCLEIC ACID; EUROPE; GENOMICS; HUMANS; INFORMATION STORAGE AND RETRIEVAL; INTERNET;

EID: 9144233545     PISSN: 03051048     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (20)

1. Brooksbank,C., Camon,E., Harris,M.A., Magrane,M., Martin,M., Mulder,N., O'Donovan,C., Parkinson,H., Tuli,M., Apweiler,R. et al. (2003) The European Bioinformatics Institute's data resources. Nucleic Acids Res., 31, 43-50.
2. Boeckmann,B., Bairoch,A., Apweiler,R., Blatter,M., Estreicher,A., Gasteiger,E., Martin,M.J., Michoud,K., O'Donovan,C., Phan,I. et al. (2003) The Swiss-Prot protein knowledgebase and its supplement TrEMBL in 2003. Nucleic Acids Res., 31, 365-370.
3. Apweiler,R., Bairoch,A., Wu,C.H., Barker,W.C., Boeckmann,B., Ferro,S., Gasteiger,E., Huang,H., Lopez,R., Magrane,M. et al. (2004) UniProt: the Universal Protein knowledgebase. Nucleic Acids Res., 32, D115-D119.
4. Mulder,N.J., Apweiler,R., Attwood,T.K., Bairoch,A., Barrell,D., Bateman,A., Binns,D., Biswas,M., Bradley,P., Bork,P. et al. (2003) The InterPro Database, 2003 brings increased coverage and new features. Nucleic Acids Res., 31, 315-318.
5. Boutselakis,H., Dimitropoulos,D., Fillon,J., Golovin,A., Henrick,K., Hussain,A., Ionides,J., John,M., Keller,P.A., Krissinel,E. et al. (2003) E-MSD: the European Bioinformatics Institute Macromolecular Structure Database. Nucleic Acids Res., 31, 458-462.
6. Brazma,A., Parkinson,H., Sarkans,U., Shojatalab,M., Vilo,J., Abeygunawardena,N., Holloway,E., Kapushesky,M., Kemmeren,P., Lara,G.G. et al. (2003) ArrayExpress - a public repository for microarray gene expression data at the EBI. Nucleic Acids Res., 31, 68-71.
7. Clamp,M., Andrews,D., Barker,D., Bevan,P., Cameron,G., Chen,Y., Clark,L., Cox,T., Cuff,J., Curwen,V. et al. (2003) Ensembl 2002: accommodating comparative genomics. Nucleic Acids Res., 31, 38-42.
8. Miyazaki,S., Sugawara,H., Gojobori,T. and Tateno,Y. (2003) DNA Data Bank of Japan (DDBJ) in XML. Nucleic Acids Res., 31, 13-16.
9. Benson,D.A., Karsch-Mizrachi,I., Lipman D.J., Ostell,J. and Wheeler D.L. (2003) GenBank. Nucleic Acids Res., 31, 23-27.
10. Lombard,V., Camon,E.B., Parkinson,H.E., Hingamp,P., Stoesser,G. and Redaschi,N. (2002) EMBL-Align: a new public nucleotide and amino acid multiple sequence alignment database. Bioinformatics, 18, 763-764.
11. Pruess,M., Fleischmann,W., Kanapin,A., Karavidopoulou,Y., Kersey,P., Kriventseva,E., Mittard,V., Mulder,N., Phan,I., Servant,F. et al. (2003) The Proteome Analysis database: a tool for the in silico analysis of whole proteomes. Nucleic Acids Res., 31, 414-417.
12. Zdobnov,E.M., Lopez,R., Apweiler, R. and Etzold,T. (2002) The EBI SRS server - new features. Bioinformatics, 18, 1149-1150.
13. Zdobnov,E.M., Lopez,R., Apweiler,R. and Etzold,T. (2002) The EBI SRS server - recent developments. Bioinformatics, 18, 368-373.
14. Pearson,W.R. (1994) Using the FASTA program to search protein and DNA sequence databases. Methods Mol. Biol., 24, 307-331
15. Lopez,R., Silventoinen,V., Robinson,S., Kibria,A. and Gish,W. (2003) WU-Blast2 server at the European Bioinformatics Institute. Nucleic Acids Res., 31, 3795-3798.
16. Thompson,J.D., Higgins,D.G. and Gibson,T.J. (1994) CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res., 22, 4673-4680.
17. Zdobnov,E.M. and Apweiler,R. (2001) InterProScan - an integration platform for the signature-recognition methods in InterPro. Bioinformatics, 17, 847-848.
18. Rice,P., Longden,I. and Bleasby,A. (2000) EMBOSS: the European Molecular Biology Open Software Suite. Trends Genet., 16, 276-277.
19. Stoesser,G., Baker,W., van den Broek,A., Garcia-Pastor,M., Kanz,C., Kulikova,T., Leinonen,R., Lin,Q., Lombard,V., Lopez,R. et al. (2003) The EMBL Nucleotide Sequence Database: major new developments. Nucleic Acids Res., 31, 17-22.
20. Leinonen,R., Nardone,F., Oyewole,O., Redaschi,N. and Stoehr,P. (2003) The EMBL sequence version archive. Bioinformatics, 19, 1861-1862