메뉴 건너뛰기




Volumn 11, Issue 2, 2012, Pages

Direct Iterative Protein Profiling (DIPP) - An innovative method for large-scale protein detection applied to budding yeast mitosis

Author keywords

[No Author keywords available]

Indexed keywords

MESSENGER RNA; PROTEOME; FUNGAL DNA; SACCHAROMYCES CEREVISIAE PROTEIN;

EID: 84863036868     PISSN: 15359476     EISSN: 15359484     Source Type: Journal    
DOI: 10.1074/mcp.M111.012682     Document Type: Article
Times cited : (24)

References (48)
  • 1
    • 49549120655 scopus 로고    scopus 로고
    • Improvement of Saccharomyces yeast strains used in brewing, wine making and baking
    • Donalies, U. E., Nguyen, H. T., Stahl, U., and Nevoigt, E. (2008) Improvement of Saccharomyces yeast strains used in brewing, wine making and baking. Adv. Biochem. Eng. Biotechnol. 111, 67-98
    • (2008) Adv. Biochem. Eng. Biotechnol. , vol.111 , pp. 67-98
    • Donalies, U.E.1    Nguyen, H.T.2    Stahl, U.3    Nevoigt, E.4
  • 2
    • 77953081255 scopus 로고    scopus 로고
    • Saccharomyces cerevisiae and DNA microarray analyses: What did we learn from it for a better understanding and exploitation of yeast biotechnology?
    • Hirasawa, T., Furusawa, C., and Shimizu, H. (2010) Saccharomyces cerevisiae and DNA microarray analyses: what did we learn from it for a better understanding and exploitation of yeast biotechnology? Appl. Microbiol. Biotechnol. 87, 391-400
    • (2010) Appl. Microbiol. Biotechnol. , vol.87 , pp. 391-400
    • Hirasawa, T.1    Furusawa, C.2    Shimizu, H.3
  • 4
    • 46749108855 scopus 로고    scopus 로고
    • The Yeast Saccharomyces cerevisiae: A Versatile Model System for the Identification and Characterization of Bacterial Virulence Proteins
    • DOI 10.1016/j.chom.2008.06.004, PII S1931312808001935
    • Siggers, K. A., and Lesser, C. F. (2008) The Yeast Saccharomyces cerevisiae: a versatile model system for the identification and characterization of bacterial virulence proteins. Cell Host Microbe 4, 8-15 (Pubitemid 351944055)
    • (2008) Cell Host and Microbe , vol.4 , Issue.1 , pp. 8-15
    • Siggers, K.A.1    Lesser, C.F.2
  • 5
    • 78649631240 scopus 로고    scopus 로고
    • Growth and division-not a one-way road
    • Goranov, A. I., and Amon, A. (2010) Growth and division-not a one-way road. Curr. Opin. Cell Biol. 22, 795-800
    • (2010) Curr. Opin. Cell Biol. , vol.22 , pp. 795-800
    • Goranov, A.I.1    Amon, A.2
  • 7
    • 0028806048 scopus 로고
    • Quantitative monitoring of gene expression patterns with a complementary DNA microarray
    • Schena, M., Shalon, D., Davis, R. W., and Brown, P. O. (1995) Quantitative monitoring of gene expression patterns with a complementary DNA microarray. Science 270, 467-470
    • (1995) Science , vol.270 , pp. 467-470
    • Schena, M.1    Shalon, D.2    Davis, R.W.3    Brown, P.O.4
  • 8
    • 57749195712 scopus 로고    scopus 로고
    • RNA-Seq: A revolutionary tool for transcriptomics
    • Wang, Z., Gerstein, M., and Snyder, M. (2009) RNA-Seq: a revolutionary tool for transcriptomics. Nat. Rev. Genet. 10, 57-63
    • (2009) Nat. Rev. Genet. , vol.10 , pp. 57-63
    • Wang, Z.1    Gerstein, M.2    Snyder, M.3
  • 9
    • 70350217752 scopus 로고    scopus 로고
    • Recent advances in yeast organelle and membrane proteomics
    • Premsler, T., Zahedi, R. P., Lewandrowski, U., and Sickmann, A. (2009) Recent advances in yeast organelle and membrane proteomics. Proteomics 9, 4731-4743
    • (2009) Proteomics , vol.9 , pp. 4731-4743
    • Premsler, T.1    Zahedi, R.P.2    Lewandrowski, U.3    Sickmann, A.4
  • 10
    • 77957233015 scopus 로고    scopus 로고
    • Yeast proteomics and protein microarrays
    • Chen, R., and Snyder, M. Yeast proteomics and protein microarrays. J. Proteomics 73, 2147-2157
    • J. Proteomics , vol.73 , pp. 2147-2157
    • Chen, R.1    Snyder, M.2
  • 11
    • 70350235046 scopus 로고    scopus 로고
    • Exploring the dynamics of the yeast proteome by means of 2-DE
    • Massoni, A., Moes, S., Perrot, M., Jenoe, P., and Boucherie, H. (2009) Exploring the dynamics of the yeast proteome by means of 2-DE. Proteomics 9, 4674-4685
    • (2009) Proteomics , vol.9 , pp. 4674-4685
    • Massoni, A.1    Moes, S.2    Perrot, M.3    Jenoe, P.4    Boucherie, H.5
  • 12
    • 0024438708 scopus 로고
    • Electrospray ionization for mass spectrometry of large biomolecules
    • Fenn, J. B., Mann, M., Meng, C. K., Wong, S. F., and Whitehouse, C. M. (1989) Electrospray ionization for mass spectrometry of large biomolecules. Science 246, 64-71 (Pubitemid 19252085)
    • (1989) Science , vol.246 , Issue.4926 , pp. 64-71
    • Fenn, J.B.1    Mann, M.2    Meng, C.K.3    Wong, S.F.4    Whitehouse, C.M.5
  • 14
    • 79958767028 scopus 로고    scopus 로고
    • Systematic characterization of protein-DNA interactions
    • Xie, Z., Hu, S., Qian, J., Blackshaw, S., and Zhu, H. (2011) Systematic characterization of protein-DNA interactions. Cell. Mol. Life Sci. 68, 1657-1668
    • (2011) Cell. Mol. Life Sci. , vol.68 , pp. 1657-1668
    • Xie, Z.1    Hu, S.2    Qian, J.3    Blackshaw, S.4    Zhu, H.5
  • 15
  • 16
    • 33745591083 scopus 로고    scopus 로고
    • Status of complete proteome analysis by mass spectrometry: SILAC labeled yeast as a model system
    • de Godoy, L. M., Olsen, J. V., de Souza, G. A., Li, G., Mortensen, P., and Mann, M. (2006) Status of complete proteome analysis by mass spectrometry: SILAC labeled yeast as a model system. Genome Biol. 7, R50
    • (2006) Genome Biol. , vol.7
    • De Godoy, L.M.1    Olsen, J.V.2    De Souza, G.A.3    Li, G.4    Mortensen, P.5    Mann, M.6
  • 18
    • 0015419539 scopus 로고
    • Effect of pH on adenine and amino acid uptake during sporulation in Saccharomyces cerevisiae
    • Mills, D. (1972) Effect of pH on adenine and amino acid uptake during sporulation in Saccharomyces cerevisiae. J. Bacteriol. 112, 519-526
    • (1972) J. Bacteriol. , vol.112 , pp. 519-526
    • Mills, D.1
  • 19
    • 68749094119 scopus 로고    scopus 로고
    • Full dynamic range proteome analysis of S. cerevisiae by targeted proteomics
    • Picotti, P., Bodenmiller, B., Mueller, L. N., Domon, B., and Aebersold, R. (2009) Full dynamic range proteome analysis of S. cerevisiae by targeted proteomics. Cell 138, 795-806
    • (2009) Cell , vol.138 , pp. 795-806
    • Picotti, P.1    Bodenmiller, B.2    Mueller, L.N.3    Domon, B.4    Aebersold, R.5
  • 25
    • 0038349948 scopus 로고    scopus 로고
    • Sequencing and comparison of yeast species to identify genes and regulatory elements
    • DOI 10.1038/nature01644
    • Kellis, M., Patterson, N., Endrizzi, M., Birren, B., and Lander, E. S. (2003) Sequencing and comparison of yeast species to identify genes and regulatory elements. Nature 423, 241-254 (Pubitemid 40852689)
    • (2003) Nature , vol.423 , Issue.6937 , pp. 241-254
    • Kellis, M.1    Patterson, N.2    Endrizzi, M.3    Birren, B.4    Lander, E.S.5
  • 27
    • 75849158230 scopus 로고    scopus 로고
    • The Gene Ontology in 2010: Extensions and refinements
    • Consortium
    • Consortium. (2010) The Gene Ontology in 2010: extensions and refinements. Nucleic Acids Res. 38, D331-335
    • (2010) Nucleic Acids Res. , vol.38
  • 28
    • 43049127826 scopus 로고    scopus 로고
    • PeptideAtlas: A resource for target selection for emerging targeted proteomics workflows
    • DOI 10.1038/embor.2008.56, PII EMBOR200856
    • Deutsch, E. W., Lam, H., and Aebersold, R. (2008) PeptideAtlas: a resource for target selection for emerging targeted proteomics workflows. EMBO Rep. 9, 429-434 (Pubitemid 351627279)
    • (2008) EMBO Reports , vol.9 , Issue.5 , pp. 429-434
    • Deutsch, E.W.1    Lam, H.2    Aebersold, R.3
  • 30
    • 3543023287 scopus 로고    scopus 로고
    • Direct proteomic mapping of the lung microvascular endothelial cell surface in vivo and in cell culture
    • DOI 10.1038/nbt993
    • Durr, E., Yu, J., Krasinska, K. M., Carver, L. A., Yates, J. R., Testa, J. E., Oh, P., and Schnitzer, J. E. (2004) Direct proteomic mapping of the lung microvascular endothelial cell surface in vivo and in cell culture. Nat. Biotechnol. 22, 985-992 (Pubitemid 39014475)
    • (2004) Nature Biotechnology , vol.22 , Issue.8 , pp. 985-992
    • Durr, E.1    Yu, J.2    Krasinska, K.M.3    Carver, L.A.4    Yates III, J.R.5    Testa, J.E.6    Oh, P.7    Schnitzer, J.E.8
  • 32
    • 3242731195 scopus 로고    scopus 로고
    • A model for random sampling and estimation of relative protein abundance in shotgun proteomics
    • DOI 10.1021/ac0498563
    • Liu, H., Sadygov, R. G., and Yates, J. R., 3rd (2004) A model for random sampling and estimation of relative protein abundance in shotgun proteomics. Anal. Chem. 76, 4193-4201 (Pubitemid 38943698)
    • (2004) Analytical Chemistry , vol.76 , Issue.14 , pp. 4193-4201
    • Liu, H.1    Sadygov, R.G.2    Yates III, J.R.3
  • 34
    • 39749099462 scopus 로고    scopus 로고
    • Strategy for comprehensive identification of post-translational modifications in cellular proteins, including low abundant modifications: Application to glyceraldehyde-3-phosphate dehydrogenase
    • DOI 10.1021/pr700657y
    • Seo, J., Jeong, J., Kim, Y. M., Hwang, N., Paek, E., and Lee, K. J. (2008) Strategy for comprehensive identification of post-translational modifications in cellular proteins, including low abundant modifications: application to glyceraldehyde-3-phosphate dehydrogenase. J Proteome Res. 7, 587-602 (Pubitemid 351294021)
    • (2008) Journal of Proteome Research , vol.7 , Issue.2 , pp. 587-602
    • Seo, J.1    Jeong, J.2    Young, M.K.3    Hwang, N.4    Paek, E.5    Lee, K.-J.6
  • 35
    • 45249094536 scopus 로고    scopus 로고
    • Exploring the precursor ion exclusion feature of liquid chromatography-electrospray ionization quadrupole time-of-flight mass spectrometry for improving protein identification in shotgun proteome analysis
    • DOI 10.1021/ac800260w
    • Wang, N., and Li, L. (2008) Exploring the precursor ion exclusion feature of liquid chromatography-electrospray ionization quadrupole time-of-flight mass spectrometry for improving protein identification in shotgun proteome analysis. Anal. Chem. 80, 4696-4710 (Pubitemid 351842350)
    • (2008) Analytical Chemistry , vol.80 , Issue.12 , pp. 4696-4710
    • Wang, N.1    Li, L.2
  • 39
    • 67049117495 scopus 로고    scopus 로고
    • Directed sample interrogation utilizing an accurate mass exclusion-based data-dependent acquisition strategy (AMEx)
    • Rudomin, E. L., Carr, S. A., and Jaffe, J. D. (2009) Directed sample interrogation utilizing an accurate mass exclusion-based data-dependent acquisition strategy (AMEx). J. Proteome Res. 8, 3154-3160
    • (2009) J. Proteome Res. , vol.8 , pp. 3154-3160
    • Rudomin, E.L.1    Carr, S.A.2    Jaffe, J.D.3
  • 40
    • 71949098172 scopus 로고    scopus 로고
    • Signalling pathways in the unfolded protein response: Development from yeast to mammals
    • Mori, K. (2009) Signalling pathways in the unfolded protein response: development from yeast to mammals. J. Biochem. 146, 743-750
    • (2009) J. Biochem. , vol.146 , pp. 743-750
    • Mori, K.1
  • 41
    • 0038825775 scopus 로고    scopus 로고
    • Reinvestigation of the Saccharomyces cerevisiae genome annotation by comparison to the genome of a related fungus: Ashbya gossypii
    • Brachat, S., Dietrich, F. S., Voegeli, S., Zhang, Z., Stuart, L., Lerch, A., Gates, K., Gaffney, T., and Philippsen, P. (2003) Reinvestigation of the Saccharomyces cerevisiae genome annotation by comparison to the genome of a related fungus: Ashbya gossypii. Genome Biol. 4, R45
    • (2003) Genome Biol. , vol.4
    • Brachat, S.1    Dietrich, F.S.2    Voegeli, S.3    Zhang, Z.4    Stuart, L.5    Lerch, A.6    Gates, K.7    Gaffney, T.8    Philippsen, P.9
  • 42
    • 77957283832 scopus 로고    scopus 로고
    • Signal integration in budding yeast
    • Waltermann, C., and Klipp, E. (2010) Signal integration in budding yeast. Biochem. Soc. Trans. 38, 1257-1264
    • (2010) Biochem. Soc. Trans. , vol.38 , pp. 1257-1264
    • Waltermann, C.1    Klipp, E.2
  • 43
  • 45
    • 34748920975 scopus 로고    scopus 로고
    • Meiosis-Specific Destruction of the Ume6p Repressor by the Cdc20-Directed APC/C
    • DOI 10.1016/j.molcel.2007.08.019, PII S109727650700562X
    • Mallory, M. J., Cooper, K. F., and Strich, R. (2007) Meiosis-specific destruction of the Ume6p repressor by the Cdc20-directed APC/C. Mol. Cell. 27, 951-961 (Pubitemid 47488188)
    • (2007) Molecular Cell , vol.27 , Issue.6 , pp. 951-961
    • Mallory, M.J.1    Cooper, K.F.2    Strich, R.3
  • 46
    • 84855200643 scopus 로고    scopus 로고
    • Principles of electrospray ionization
    • 1 Jul
    • Wilm, M. (2011) Principles of electrospray ionization. Mol. Cell. Proteomics 1 Jul;10(7):M111.009407
    • (2011) Mol. Cell. Proteomics , vol.10 , Issue.7
    • Wilm, M.1
  • 47
    • 0029685702 scopus 로고    scopus 로고
    • Analytical properties of the nanoelectrospray ion source
    • Wilm, M., and Mann, M. (1996) Analytical properties of the nanoelectrospray ion source. Anal. Chem. 68, 1-8 (Pubitemid 126485492)
    • (1996) Analytical Chemistry , vol.68 , Issue.1 , pp. 1-8
    • Wilm, M.1    Mann, M.2
  • 48
    • 1942452749 scopus 로고    scopus 로고
    • Proof and evolutionary analysis of ancient genome duplication in the yeast Saccharomyces cerevisiae
    • DOI 10.1038/nature02424
    • Kellis, M., Birren, B. W., and Lander, E. S. (2004) Proof and evolutionary analysis of ancient genome duplication in the yeast Saccharomyces cerevisiae. Nature 428, 617-624 (Pubitemid 38524797)
    • (2004) Nature , vol.428 , Issue.6983 , pp. 617-624
    • Kellis, M.1    Birren, B.W.2    Lander, E.S.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.