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Volumn 20, Issue 4, 2014, Pages 483-495

An atlas of chromatoid body components

Author keywords

Chromatoid body; Male germ cells; PiRNA; Post transcriptional; Ribonucleoprotein granule

Indexed keywords

MESSENGER RNA; PIWI INTERACTING RNA; PROTEOME; RNA; RNA BINDING PROTEIN;

EID: 84896538092     PISSN: 13558382     EISSN: 14699001     Source Type: Journal    
DOI: 10.1261/rna.043729.113     Document Type: Article
Times cited : (88)

References (57)
  • 4
    • 70350453978 scopus 로고    scopus 로고
    • Isolation and analyses of enriched populations of male mouse germ cells by sedimentation velocity: The centrifugal elutriation
    • BarchiM,Geremia R, Magliozzi R, Bianchi E. 2009. Isolation and analyses of enriched populations of male mouse germ cells by sedimentation velocity: The centrifugal elutriation. Methods Mol Biol 558: 299-321.
    • (2009) Methods Mol Biol , vol.558 , pp. 299-321
    • Barchi, M.1    Geremia, R.2    Magliozzi, R.3    Bianchi, E.4
  • 5
    • 85011942476 scopus 로고    scopus 로고
    • Assembly, disassembly and recycling: The dynamics of exon junction complexes
    • Bono F, Gehring NH. 2011. Assembly, disassembly and recycling: The dynamics of exon junction complexes. RNA Biol 8: 24-29.
    • (2011) RNA Biol , vol.8 , pp. 24-29
    • Bono, F.1    Gehring, N.H.2
  • 6
    • 72149095755 scopus 로고    scopus 로고
    • Eukaryotic stress granules: The ins and outs of translation
    • Buchan JR, Parker R. 2009. Eukaryotic stress granules: The ins and outs of translation. Mol Cell 36: 932-941.
    • (2009) Mol Cell , vol.36 , pp. 932-941
    • Buchan, J.R.1    Parker, R.2
  • 8
    • 41049095443 scopus 로고    scopus 로고
    • The annotation, mapping, expression and network (AMEN) suite of tools for molecular systems biology
    • doi: 10.1186/1471-2105-9-86
    • Chalmel F, Primig M. 2008. The Annotation, Mapping, Expression and Network (AMEN) suite of tools for molecular systems biology. BMC Bioinformatics 9: 86. doi: 10.1186/1471-2105-9-86.
    • (2008) BMC Bioinformatics , vol.9 , pp. 86
    • Chalmel, F.1    Primig, M.2
  • 10
    • 67349232822 scopus 로고    scopus 로고
    • Ultrastructural characterization of spermatogenesis and its evolutionary conservation in the germline: Germinal granules in mammals
    • Chuma S, Hosokawa M, Tanaka T, Nakatsuji N. 2009. Ultrastructural characterization of spermatogenesis and its evolutionary conservation in the germline: Germinal granules in mammals. Mol Cell Endocrinol 306: 17-23.
    • (2009) Mol Cell Endocrinol , vol.306 , pp. 17-23
    • Chuma, S.1    Hosokawa, M.2    Tanaka, T.3    Nakatsuji, N.4
  • 11
    • 84878851966 scopus 로고    scopus 로고
    • A transcriptome-wide RNAi screen in the Drosophila ovary reveals factors of the germline piRNA pathway
    • Czech B, Preall JB, McGinn J, Hannon GJ. 2013. A transcriptome-wide RNAi screen in the Drosophila ovary reveals factors of the germline piRNA pathway. Mol Cell 50: 749-761.
    • (2013) Mol Cell , vol.50 , pp. 749-761
    • Czech, B.1    Preall, J.B.2    McGinn, J.3    Hannon, G.J.4
  • 12
    • 84857189974 scopus 로고    scopus 로고
    • Understanding transgenerational epigenetic inheritance via the gametes in mammals
    • Daxinger L, Whitelaw E. 2012. Understanding transgenerational epigenetic inheritance via the gametes in mammals. Nat Rev Genet 13: 153-162.
    • (2012) Nat Rev Genet , vol.13 , pp. 153-162
    • Daxinger, L.1    Whitelaw, E.2
  • 14
    • 0014741599 scopus 로고
    • Observations on the fine structure and relationships of the chromatoid body in mammalian spermatogenesis
    • Fawcett DW, Eddy EM, Phillips DM. 1970. Observations on the fine structure and relationships of the chromatoid body in mammalian spermatogenesis. Biol Reprod 2: 129-153.
    • (1970) Biol Reprod , vol.2 , pp. 129-153
    • Fawcett, D.W.1    Eddy, E.M.2    Phillips, D.M.3
  • 15
    • 77955409741 scopus 로고    scopus 로고
    • MOV10L1 is necessary for protection of spermatocytes against retrotransposons by Piwi-interacting RNAs
    • Frost RJ, Hamra FK, Richardson JA, Qi X, Bassel-Duby R, Olson EN. 2010. MOV10L1 is necessary for protection of spermatocytes against retrotransposons by Piwi-interacting RNAs. Proc Natl Acad Sci 107: 11847-11852.
    • (2010) Proc Natl Acad Sci , vol.107 , pp. 11847-11852
    • Frost, R.J.1    Hamra, F.K.2    Richardson, J.A.3    Qi, X.4    Bassel-Duby, R.5    Olson, E.N.6
  • 16
    • 33745336617 scopus 로고    scopus 로고
    • A germline- specific class of small RNAs binds mammalian Piwi proteins
    • Girard A, Sachidanandam R, Hannon GJ, Carmell MA. 2006. A germline- specific class of small RNAs binds mammalian Piwi proteins. Nature 442: 199-202.
    • (2006) Nature , vol.442 , pp. 199-202
    • Girard, A.1    Sachidanandam, R.2    Hannon, G.J.3    Carmell, M.A.4
  • 17
    • 4644250908 scopus 로고    scopus 로고
    • The roles of cytoplasmic poly(A)-binding proteins in regulating gene expression: A developmental perspective
    • Gorgoni B, Gray NK. 2004. The roles of cytoplasmic poly(A)-binding proteins in regulating gene expression: A developmental perspective. Brief Funct Genomic Proteomic 3: 125-141.
    • (2004) Brief Funct Genomic Proteomic , vol.3 , pp. 125-141
    • Gorgoni, B.1    Gray, N.K.2
  • 18
    • 77956687928 scopus 로고    scopus 로고
    • Functional diversity of the hnRNPs: Past, present and perspectives
    • Han SP, Tang YH, Smith R. 2010. Functional diversity of the hnRNPs: Past, present and perspectives. Biochem J 430: 379-392.
    • (2010) Biochem J , vol.430 , pp. 379-392
    • Han, S.P.1    Tang, Y.H.2    Smith, R.3
  • 20
    • 79952509006 scopus 로고    scopus 로고
    • PiRNA-associated germline nuage formation and spermatogenesis require MitoPLD profusogenic mitochondrial- surface lipid signaling
    • Huang H, Gao Q, Peng X, Choi SY, Sarma K, Ren H, Morris AJ, Frohman MA. 2011. piRNA-associated germline nuage formation and spermatogenesis require MitoPLD profusogenic mitochondrial- surface lipid signaling. Dev Cell 20: 376-387.
    • (2011) Dev Cell , vol.20 , pp. 376-387
    • Huang, H.1    Gao, Q.2    Peng, X.3    Choi, S.Y.4    Sarma, K.5    Ren, H.6    Morris, A.J.7    Frohman, M.A.8
  • 21
    • 61449172037 scopus 로고    scopus 로고
    • Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
    • Huang da W, Sherman BT, Lempicki RA. 2009. Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources. Nat Protoc 4: 44-57.
    • (2009) Nat Protoc , vol.4 , pp. 44-57
    • Huang Da, W.1    Sherman, B.T.2    Lempicki, R.A.3
  • 22
    • 57049126216 scopus 로고    scopus 로고
    • SMG6 is the catalytic endonuclease that cleaves mRNAs containing nonsense codons in metazoan
    • Huntzinger E, Kashima I, Fauser M, Sauliere J, Izaurralde E. 2008. SMG6 is the catalytic endonuclease that cleaves mRNAs containing nonsense codons in metazoan. RNA 14: 2609-2617.
    • (2008) RNA , vol.14 , pp. 2609-2617
    • Huntzinger, E.1    Kashima, I.2    Fauser, M.3    Sauliere, J.4    Izaurralde, E.5
  • 23
    • 84868613084 scopus 로고    scopus 로고
    • The structural biochemistry of Zucchini implicates it as a nuclease in piRNA biogenesis
    • Ipsaro JJ, Haase AD, Knott SR, Joshua-Tor L, Hannon GJ. 2012. The structural biochemistry of Zucchini implicates it as a nuclease in piRNA biogenesis. Nature 491: 279-283.
    • (2012) Nature , vol.491 , pp. 279-283
    • Ipsaro, J.J.1    Haase, A.D.2    Knott, S.R.3    Joshua-Tor, L.4    Hannon, G.J.5
  • 24
    • 77950295790 scopus 로고    scopus 로고
    • Minireview: Global regulation and dynamics of ribonucleic acid
    • Keene JD. 2010. Minireview: Global regulation and dynamics of ribonucleic acid. Endocrinology 151: 1391-1397.
    • (2010) Endocrinology , vol.151 , pp. 1391-1397
    • Keene, J.D.1
  • 25
    • 84867850145 scopus 로고    scopus 로고
    • NMD: A multifaceted response to premature translational termination
    • Kervestin S, Jacobson A. 2012. NMD: A multifaceted response to premature translational termination. Nat Rev Mol Cell Biol 13: 700-712.
    • (2012) Nat Rev Mol Cell Biol , vol.13 , pp. 700-712
    • Kervestin, S.1    Jacobson, A.2
  • 26
    • 33845784376 scopus 로고    scopus 로고
    • The chromatoid body: A germ-cellspecific RNA-processing centre
    • Kotaja N, Sassone-Corsi P. 2007. The chromatoid body: A germ-cellspecific RNA-processing centre. Nat Rev Mol Cell Biol 8: 85-90.
    • (2007) Nat Rev Mol Cell Biol , vol.8 , pp. 85-90
    • Kotaja, N.1    Sassone-Corsi, P.2
  • 30
    • 84876247905 scopus 로고    scopus 로고
    • Transcriptome profiling of the murine testis during the first wave of spermatogenesis
    • Laiho A, Kotaja N, Gyenesei A, Sironen A. 2013. Transcriptome profiling of the murine testis during the first wave of spermatogenesis. PLoS One 8: E61558.
    • (2013) PLoS One , vol.8
    • Laiho, A.1    Kotaja, N.2    Gyenesei, A.3    Sironen, A.4
  • 34
    • 77952891667 scopus 로고    scopus 로고
    • Accumulation of piRNAs in the chromatoid bodies purified by a novel isolation protocol
    • Meikar O, Da Ros M, Liljenback H, Toppari J, Kotaja N. 2010. Accumulation of piRNAs in the chromatoid bodies purified by a novel isolation protocol. Exp Cell Res 316: 1567-1575.
    • (2010) Exp Cell Res , vol.316 , pp. 1567-1575
    • Meikar, O.1    Da Ros, M.2    Liljenback, H.3    Toppari, J.4    Kotaja, N.5
  • 35
    • 79960652605 scopus 로고    scopus 로고
    • Chromatoid body and small RNAs in male germ cells
    • Meikar O, Da Ros M, Korhonen H, Kotaja N. 2011. Chromatoid body and small RNAs in male germ cells. Reproduction 142: 195-209.
    • (2011) Reproduction , vol.142 , pp. 195-209
    • Meikar, O.1    Da Ros, M.2    Korhonen, H.3    Kotaja, N.4
  • 36
    • 84888821646 scopus 로고    scopus 로고
    • Epigenetic regulation of male germ cell differentiation
    • Meikar O, Da Ros M, Kotaja N. 2012. Epigenetic regulation of male germ cell differentiation. Subcell Biochem 61: 119-138.
    • (2012) Subcell Biochem , vol.61 , pp. 119-138
    • Meikar, O.1    Da Ros, M.2    Kotaja, N.3
  • 37
    • 6944256813 scopus 로고    scopus 로고
    • Nonsense surveillance regulates expression of diverse classes of mammalian transcripts and mutes genomic noise
    • Mendell JT, Sharifi NA, Meyers JL, Martinez-Murillo F, Dietz HC. 2004. Nonsense surveillance regulates expression of diverse classes of mammalian transcripts and mutes genomic noise. Nat Genet 36: 1073-1078.
    • (2004) Nat Genet , vol.36 , pp. 1073-1078
    • Mendell, J.T.1    Sharifi, N.A.2    Meyers, J.L.3    Martinez-Murillo, F.4    Dietz, H.C.5
  • 38
    • 84862668751 scopus 로고    scopus 로고
    • The RNA binding protein SAM68 transiently localizes in the chromatoid body of male germ cells and influences expression of select microRNAs
    • Messina V, Meikar O, Paronetto MP, Calabretta S, Geremia R, Kotaja N, Sette C. 2012. The RNA binding protein SAM68 transiently localizes in the chromatoid body of male germ cells and influences expression of select microRNAs. PLoS One 7: E39729.
    • (2012) PLoS One , vol.7
    • Messina, V.1    Meikar, O.2    Paronetto, M.P.3    Calabretta, S.4    Geremia, R.5    Kotaja, N.6    Sette, C.7
  • 39
    • 84884692094 scopus 로고    scopus 로고
    • Comparison of EJC-enhanced and EJC-independent NMD in human cells reveals two partially redundant degradation pathways
    • Metze S, Herzog VA, Ruepp MD, Muhlemann O. 2013. Comparison of EJC-enhanced and EJC-independent NMD in human cells reveals two partially redundant degradation pathways. RNA 19: 1432-1448.
    • (2013) RNA , vol.19 , pp. 1432-1448
    • Metze, S.1    Herzog, V.A.2    Ruepp, M.D.3    Muhlemann, O.4
  • 41
    • 84856858152 scopus 로고    scopus 로고
    • N- and C-terminal Upf1 phosphorylations create binding platforms for SMG-6 and SMG-5:SMG-7 during NMD
    • Okada-Katsuhata Y, Yamashita A, Kutsuzawa K, Izumi N, Hirahara F, Ohno S. 2012. N- and C-terminal Upf1 phosphorylations create binding platforms for SMG-6 and SMG-5:SMG-7 during NMD. Nucleic Acids Res 40: 1251-1266.
    • (2012) Nucleic Acids Res , vol.40 , pp. 1251-1266
    • Okada-Katsuhata, Y.1    Yamashita, A.2    Kutsuzawa, K.3    Izumi, N.4    Hirahara, F.5    Ohno, S.6
  • 42
    • 23044451196 scopus 로고    scopus 로고
    • The chromatoid body in spermatogenesis
    • Parvinen M. 2005. The chromatoid body in spermatogenesis. Int J Androl 28: 189-201.
    • (2005) Int J Androl , vol.28 , pp. 189-201
    • Parvinen, M.1
  • 43
    • 0030796559 scopus 로고    scopus 로고
    • Computer analysis of living cells: Movements of the chromatoid body in early spermatids compared with its ultrastructure in snap-frozen preparations
    • Parvinen M, Salo J, Toivonen M, Nevalainen O, Soini E, Pelliniemi LJ. 1997. Computer analysis of living cells: Movements of the chromatoid body in early spermatids compared with its ultrastructure in snap-frozen preparations. Histochem Cell Biol 108: 77-81.
    • (1997) Histochem Cell Biol , vol.108 , pp. 77-81
    • Parvinen, M.1    Salo, J.2    Toivonen, M.3    Nevalainen, O.4    Soini, E.5    Pelliniemi, L.J.6
  • 44
    • 84861980264 scopus 로고    scopus 로고
    • Tudor domain proteins in development
    • Pek JW, Anand A, Kai T. 2012. Tudor domain proteins in development. Development 139: 2255-2266.
    • (2012) Development , vol.139 , pp. 2255-2266
    • Pek, J.W.1    Anand, A.2    Kai, T.3
  • 45
    • 25844435702 scopus 로고    scopus 로고
    • Nonsense-mediated mRNA decay factors act in concert to regulate common mRNA targets
    • Rehwinkel J, Letunic I, Raes J, Bork P, Izaurralde E. 2005. Nonsense-mediated mRNA decay factors act in concert to regulate common mRNA targets. RNA 11: 1530-1544.
    • (2005) RNA , vol.11 , pp. 1530-1544
    • Rehwinkel, J.1    Letunic, I.2    Raes, J.3    Bork, P.4    Izaurralde, E.5
  • 47
    • 77951885433 scopus 로고    scopus 로고
    • Relevance of gonadotropinregulated testicular RNA helicase (GRTH/DDX25) in the structural integrity of the chromatoid body during spermatogenesis
    • Sato H, Tsai-Morris CH, Dufau ML. 2010. Relevance of gonadotropinregulated testicular RNA helicase (GRTH/DDX25) in the structural integrity of the chromatoid body during spermatogenesis. Biochim Biophys Acta 1803: 534-543.
    • (2010) Biochim Biophys Acta , vol.1803 , pp. 534-543
    • Sato, H.1    Tsai-Morris, C.H.2    Dufau, M.L.3
  • 49
  • 53
    • 65049090424 scopus 로고    scopus 로고
    • Tdrd6 is required for spermiogenesis, chromatoid body architecture, and regulation of miRNA expression
    • Vasileva A, Tiedau D, Firooznia A, Muller-Reichert T, Jessberger R. 2009. Tdrd6 is required for spermiogenesis, chromatoid body architecture, and regulation of miRNA expression. Curr Biol 19: 630-639.
    • (2009) Curr Biol , vol.19 , pp. 630-639
    • Vasileva, A.1    Tiedau, D.2    Firooznia, A.3    Muller-Reichert, T.4    Jessberger, R.5
  • 55
    • 0035449691 scopus 로고    scopus 로고
    • Human SMG-1, a novel phosphatidylinositol 3-kinase-related protein kinase, associates with components of the mRNA surveillance complex and is involved in the regulation of nonsense-mediated mRNA decay
    • Yamashita A, Ohnishi T, Kashima I, Taya Y, Ohno S. 2001. Human SMG-1, a novel phosphatidylinositol 3-kinase-related protein kinase, associates with components of the mRNA surveillance complex and is involved in the regulation of nonsense-mediated mRNA decay. Genes Dev 15: 2215-2228.
    • (2001) Genes Dev , vol.15 , pp. 2215-2228
    • Yamashita, A.1    Ohnishi, T.2    Kashima, I.3    Taya, Y.4    Ohno, S.5
  • 56
    • 84870722050 scopus 로고    scopus 로고
    • Blockade of pachytene piRNA biogenesis reveals a novel requirement for maintaining post-meiotic germline genome integrity
    • Zheng K, Wang PJ. 2012. Blockade of pachytene piRNA biogenesis reveals a novel requirement for maintaining post-meiotic germline genome integrity. PLoS Genet 8: E1003038.
    • (2012) PLoS Genet , vol.8
    • Zheng, K.1    Wang, P.J.2


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