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Volumn 5, Issue 1, 2014, Pages

Network-based analysis reveals distinct association patterns in a semantic MEDLINE-based drug-disease-gene network

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EID: 84920128158     PISSN: None     EISSN: 20411480     Source Type: Journal    
DOI: 10.1186/2041-1480-5-33     Document Type: Article
Times cited : (27)

References (40)
  • 2
    • 84870632508 scopus 로고    scopus 로고
    • Unified Medical Language System® (UMLS)
    • Unified Medical Language System® (UMLS). Available from: http://www.nlm.nih.gov/research/umls/.
  • 3
    • 84857658973 scopus 로고    scopus 로고
    • Computational approaches to disease-gene prediction: rationale, classification and successes
    • 22221742
    • Piro RM, Di Cunto F. Computational approaches to disease-gene prediction: rationale, classification and successes. FEBS J 2012, 279(5):678-696. 10.1111/j.1742-4658.2012.08471.x, 22221742.
    • (2012) FEBS J , vol.279 , Issue.5 , pp. 678-696
    • Piro, R.M.1    Di Cunto, F.2
  • 4
    • 41549139527 scopus 로고    scopus 로고
    • Walking the interactome for prioritization of candidate disease genes
    • 2427257, 18371930
    • Kohler S, Bauer S, Horn D, Robinson PN, Bauer S, Horn D, Robinson PN. Walking the interactome for prioritization of candidate disease genes. Am J Hum Genet 2008, 82(4):949-958. 10.1016/j.ajhg.2008.02.013, 2427257, 18371930.
    • (2008) Am J Hum Genet , vol.82 , Issue.4 , pp. 949-958
    • Kohler, S.1    Bauer, S.2    Horn, D.3    Robinson, P.N.4    Bauer, S.5    Horn, D.6    Robinson, P.N.7
  • 5
    • 62849126285 scopus 로고    scopus 로고
    • Disease candidate gene identification and prioritization using protein interaction networks
    • 2657789, 19245720
    • Chen J, Aronow BJ, Jegga AG. Disease candidate gene identification and prioritization using protein interaction networks. BMC Bioinformatics 2009, 10:73. 10.1186/1471-2105-10-73, 2657789, 19245720.
    • (2009) BMC Bioinformatics , vol.10 , pp. 73
    • Chen, J.1    Aronow, B.J.2    Jegga, A.G.3
  • 8
    • 77953811662 scopus 로고    scopus 로고
    • Network systems biology for drug discovery
    • 20520604
    • Arrell DK, Terzic A. Network systems biology for drug discovery. Clin Pharmacol Ther 2010, 88(1):120-125. 10.1038/clpt.2010.91, 20520604.
    • (2010) Clin Pharmacol Ther , vol.88 , Issue.1 , pp. 120-125
    • Arrell, D.K.1    Terzic, A.2
  • 9
    • 79960796417 scopus 로고    scopus 로고
    • Exploiting drug-disease relationships for computational drug repositioning
    • 3137933, 21690101
    • Dudley JT, Deshpande T, Butte AJ. Exploiting drug-disease relationships for computational drug repositioning. Brief Bioinform 2011, 12(4):303-311. 10.1093/bib/bbr013, 3137933, 21690101.
    • (2011) Brief Bioinform , vol.12 , Issue.4 , pp. 303-311
    • Dudley, J.T.1    Deshpande, T.2    Butte, A.J.3
  • 10
    • 68449088145 scopus 로고    scopus 로고
    • Human disease-drug network based on genomic expression profiles
    • 2715883, 19657382
    • Hu G, Agarwal P. Human disease-drug network based on genomic expression profiles. PLoS One 2009, 4(8):e6536. 10.1371/journal.pone.0006536, 2715883, 19657382.
    • (2009) PLoS One , vol.4 , Issue.8
    • Hu, G.1    Agarwal, P.2
  • 12
    • 84863691513 scopus 로고    scopus 로고
    • Drug repositioning through incomplete bi-cliques in an integrated drug-target-disease network
    • 22538435
    • Daminelli S, Haupt VJ, Reimann M, Haupt VJ, Reimann M, Schroeder M, Schroeder M. Drug repositioning through incomplete bi-cliques in an integrated drug-target-disease network. Integr Biol (Camb) 2012, 4(7):778-788. 10.1039/c2ib00154c, 22538435.
    • (2012) Integr Biol (Camb) , vol.4 , Issue.7 , pp. 778-788
    • Daminelli, S.1    Haupt, V.J.2    Reimann, M.3    Haupt, V.J.4    Reimann, M.5    Schroeder, M.6    Schroeder, M.7
  • 14
    • 77956304103 scopus 로고    scopus 로고
    • Reconstruction of gene regulatory modules in cancer cell cycle by multi-source data integration
    • 2858157, 20422009
    • Zhang Y, Xuan J, Xuan J, Reyes B, Reyes B, Clarke R, Ressom HW, Clarke R, Ressom HW. Reconstruction of gene regulatory modules in cancer cell cycle by multi-source data integration. PLoS One 2010, 5(4):e10268. 10.1371/journal.pone.0010268, 2858157, 20422009.
    • (2010) PLoS One , vol.5 , Issue.4
    • Zhang, Y.1    Xuan, J.2    Xuan, J.3    Reyes, B.4    Reyes, B.5    Clarke, R.6    Ressom, H.W.7    Clarke, R.8    Ressom, H.W.9
  • 16
    • 84927929230 scopus 로고    scopus 로고
    • Available from:
    • The UMLS. Semantic Groups 2012, Available from: http://semanticnetwork.nlm.nih.gov/SemGroups/.
    • (2012) Semantic Groups
    • The, U.M.L.S.1
  • 17
    • 84894573657 scopus 로고    scopus 로고
    • RDF graph definition
    • cited 2012; Available from:
    • RDF graph definition. cited 2012; Available from: http://www.w3.org/TR/rdf-mt/#graphdefs.
  • 21
    • 0037174670 scopus 로고    scopus 로고
    • Network motifs: simple building blocks of complex networks
    • 12399590
    • Milo R, Shen-Orr S, Itzkovitz S, Kashtan N, Chklovskii D, Alon U. Network motifs: simple building blocks of complex networks. Science 2002, 298(5594):824-827. 10.1126/science.298.5594.824, 12399590.
    • (2002) Science , vol.298 , Issue.5594 , pp. 824-827
    • Milo, R.1    Shen-Orr, S.2    Itzkovitz, S.3    Kashtan, N.4    Chklovskii, D.5    Alon, U.6
  • 22
    • 34249079154 scopus 로고    scopus 로고
    • Network motifs: theory and experimental approaches. Nature reviews
    • Alon U. Network motifs: theory and experimental approaches. Nature reviews. Genetics 2007, 8(6):450-461.
    • (2007) Genetics , vol.8 , Issue.6 , pp. 450-461
    • Alon, U.1
  • 23
    • 0141484611 scopus 로고    scopus 로고
    • Evolutionary conservation of motif constituents in the yeast protein interaction network
    • 12973352
    • Wuchty S, Oltvai ZN, Barabasi AL. Evolutionary conservation of motif constituents in the yeast protein interaction network. Nat Genet 2003, 35(2):176-179. 10.1038/ng1242, 12973352.
    • (2003) Nat Genet , vol.35 , Issue.2 , pp. 176-179
    • Wuchty, S.1    Oltvai, Z.N.2    Barabasi, A.L.3
  • 25
    • 84867951060 scopus 로고    scopus 로고
    • Building blocks of biological networks: a review on major network motif discovery algorithms
    • 23101871
    • Masoudi-Nejad A, Schreiber F, Kashani ZR. Building blocks of biological networks: a review on major network motif discovery algorithms. IET Syst Biol 2012, 6(5):164-174. 10.1049/iet-syb.2011.0011, 23101871.
    • (2012) IET Syst Biol , vol.6 , Issue.5 , pp. 164-174
    • Masoudi-Nejad, A.1    Schreiber, F.2    Kashani, Z.R.3
  • 26
    • 33646153295 scopus 로고    scopus 로고
    • FANMOD: a tool for fast network motif detection
    • 16455747
    • Wernicke S, Rasche F. FANMOD: a tool for fast network motif detection. Bioinformatics 2006, 22(9):1152-1153. 10.1093/bioinformatics/btl038, 16455747.
    • (2006) Bioinformatics , vol.22 , Issue.9 , pp. 1152-1153
    • Wernicke, S.1    Rasche, F.2
  • 27
    • 0742305866 scopus 로고    scopus 로고
    • Network biology: understanding the cell's functional organization. Nature reviews
    • Barabasi AL, Oltvai ZN. Network biology: understanding the cell's functional organization. Nature reviews. Genetics 2004, 5(2):101-113.
    • (2004) Genetics , vol.5 , Issue.2 , pp. 101-113
    • Barabasi, A.L.1    Oltvai, Z.N.2
  • 28
    • 2942552376 scopus 로고    scopus 로고
    • Aggregation of topological motifs in the Escherichia coli transcriptional regulatory network
    • 357809, 15018656
    • Dobrin R, Beg QK, Barabasi AL, Oltvai ZN, Beg QK, Barabasi AL, Oltvai ZN. Aggregation of topological motifs in the Escherichia coli transcriptional regulatory network. BMC Bioinformatics 2004, 5:10. 10.1186/1471-2105-5-10, 357809, 15018656.
    • (2004) BMC Bioinformatics , vol.5 , pp. 10
    • Dobrin, R.1    Beg, Q.K.2    Barabasi, A.L.3    Oltvai, Z.N.4    Beg, Q.K.5    Barabasi, A.L.6    Oltvai, Z.N.7
  • 32
    • 41649119247 scopus 로고    scopus 로고
    • Protein networks in disease
    • 3863981, 18381899
    • Ideker T, Sharan R. Protein networks in disease. Genome Res 2008, 18(4):644-652. 10.1101/gr.071852.107, 3863981, 18381899.
    • (2008) Genome Res , vol.18 , Issue.4 , pp. 644-652
    • Ideker, T.1    Sharan, R.2
  • 33
    • 61349187608 scopus 로고    scopus 로고
    • Skin problems in chronic kidney disease. Nature clinical practice
    • Kuypers DR. Skin problems in chronic kidney disease. Nature clinical practice. Nephrology 2009, 5(3):157-170.
    • (2009) Nephrology , vol.5 , Issue.3 , pp. 157-170
    • Kuypers, D.R.1
  • 35
    • 0024571377 scopus 로고
    • Pathological changes in olfactory neurons in patients with Alzheimer's disease
    • 2465496
    • Talamo BR, Rudel R, Kosik KS, Lee VM, Neff S, Adelman L, Kauer JS. Pathological changes in olfactory neurons in patients with Alzheimer's disease. Nature 1989, 337(6209):736-739. 10.1038/337736a0, 2465496.
    • (1989) Nature , vol.337 , Issue.6209 , pp. 736-739
    • Talamo, B.R.1    Rudel, R.2    Kosik, K.S.3    Lee, V.M.4    Neff, S.5    Adelman, L.6    Kauer, J.S.7
  • 37
    • 43849106171 scopus 로고    scopus 로고
    • Network motif-based identification of transcription factor-target gene relationships by integrating multi-source biological data
    • 2386822, 18426580
    • Zhang Y, Xuan J, Reyes BGDL, Clarke R, Ressom HW, Xuan J, Reyes BGDL, Clarke R, Ressom HW. Network motif-based identification of transcription factor-target gene relationships by integrating multi-source biological data. BMC Bioinformatics 2008, 9:203. 10.1186/1471-2105-9-203, 2386822, 18426580.
    • (2008) BMC Bioinformatics , vol.9 , pp. 203
    • Zhang, Y.1    Xuan, J.2    Reyes, B.G.D.L.3    Clarke, R.4    Ressom, H.W.5    Xuan, J.6    Reyes, B.G.D.L.7    Clarke, R.8    Ressom, H.W.9
  • 39
    • 84855658379 scopus 로고    scopus 로고
    • Human protein reference database and human proteinpedia as resources for phosphoproteome analysis
    • 3804167, 22159132
    • Goel R, Harsha HC, Pandey A, Prasad TS, Harsha HC, Pandey A, Prasad TS. Human protein reference database and human proteinpedia as resources for phosphoproteome analysis. Mol Biosyst 2012, 8(2):453-463. 10.1039/c1mb05340j, 3804167, 22159132.
    • (2012) Mol Biosyst , vol.8 , Issue.2 , pp. 453-463
    • Goel, R.1    Harsha, H.C.2    Pandey, A.3    Prasad, T.S.4    Harsha, H.C.5    Pandey, A.6    Prasad, T.S.7
  • 40
    • 84876515907 scopus 로고    scopus 로고
    • STRING v9.1: protein-protein interaction networks, with increased coverage and integration
    • 3531103, 23203871
    • Franceschini A, Harsha HC, Pandey A, Prasad TS. STRING v9.1: protein-protein interaction networks, with increased coverage and integration. Nucleic Acids Res 2013, 41(Database issue):D808-D815. 3531103, 23203871.
    • (2013) Nucleic Acids Res , vol.41 , Issue.Database Issue , pp. D808-D815
    • Franceschini, A.1    Harsha, H.C.2    Pandey, A.3    Prasad, T.S.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.