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Volumn 6, Issue 2, 2010, Pages

Network-based elucidation of human disease similarities reveals common functional modules enriched for pluripotent drug targets

Author keywords

[No Author keywords available]

Indexed keywords

GENE THERAPY;

EID: 77649222972     PISSN: 1553734X     EISSN: 15537358     Source Type: Journal    
DOI: 10.1371/journal.pcbi.1000662     Document Type: Article
Times cited : (272)

References (45)
  • 1
    • 0037111287 scopus 로고    scopus 로고
    • Similarities between Alzheimer's disease and vascular dementia
    • Kalaria R (2002) Similarities between Alzheimer's disease and vascular dementia. J Neurol Sci 203-204: 29-34.
    • (2002) J Neurol Sci , vol.203-204 , pp. 29-34
    • Kalaria, R.1
  • 2
    • 33947095027 scopus 로고    scopus 로고
    • A human phenome-interactome network of protein complexes implicated in genetic disorders
    • Lage K, Karlberg EO, Storling ZM, Olason PI, Pedersen AG, et al. (2007) A human phenome-interactome network of protein complexes implicated in genetic disorders. Nat Biotechnol 25: 309-316.
    • (2007) Nat Biotechnol , vol.25 , pp. 309-316
    • Lage, K.1    Karlberg, E.O.2    Storling, Z.M.3    Olason, P.I.4    Pedersen, A.G.5
  • 3
    • 58049220319 scopus 로고    scopus 로고
    • Align human interactome with phenome to identify causative genes and networks underlying disease families
    • Wu X, Liu Q, Jiang R (2009) Align human interactome with phenome to identify causative genes and networks underlying disease families. Bioinformatics 25: 98-104.
    • (2009) Bioinformatics , vol.25 , pp. 98-104
    • Wu, X.1    Liu, Q.2    Jiang, R.3
  • 4
    • 34547840224 scopus 로고    scopus 로고
    • Information theory applied to the sparse gene ontology annotation network to predict novel gene function
    • Tao Y, Sam L, Li J, Friedman C, Lussier YA (2007) Information theory applied to the sparse gene ontology annotation network to predict novel gene function. Bioinformatics 23: i529-538.
    • (2007) Bioinformatics , vol.23 , Issue.I529-538
    • Tao, Y.1    Sam, L.2    Li, J.3    Friedman, C.4    Lussier, Y.A.5
  • 8
    • 63049094002 scopus 로고    scopus 로고
    • The "etiome": Identification and clustering of human disease etiological factors
    • Liu YI, Wise PH, Butte AJ (2009) The "etiome": identification and clustering of human disease etiological factors. BMC Bioinformatics 10 Suppl 2: S14.
    • (2009) BMC Bioinformatics , vol.10 , Issue.SUPPL. 2
    • Liu, Y.I.1    Wise, P.H.2    Butte, A.J.3
  • 11
    • 33846064113 scopus 로고    scopus 로고
    • NCBI GEO: Mining tens of millions of expression profiles-database and tools update
    • Barrett T, Troup DB, Wilhite SE, Ledoux P, Rudnev D, et al. (2007) NCBI GEO: mining tens of millions of expression profiles-database and tools update. Nucleic Acids Res 35: D760-765.
    • (2007) Nucleic Acids Res , vol.35
    • Barrett, T.1    Troup, D.B.2    Wilhite, S.E.3    Ledoux, P.4    Rudnev, D.5
  • 12
    • 3042694117 scopus 로고    scopus 로고
    • Largescale meta-analysis of cancer microarray data identifies common transcriptional profiles of neoplastic transformation and progression
    • Rhodes DR, Yu J, Shanker K, Deshpande N, Varambally R, et al. (2004) Largescale meta-analysis of cancer microarray data identifies common transcriptional profiles of neoplastic transformation and progression. Proc Natl Acad Sci U S A 101: 9309-9314.
    • (2004) Proc Natl Acad Sci U S A , vol.101 , pp. 9309-9314
    • Rhodes, D.R.1    Yu, J.2    Shanker, K.3    Deshpande, N.4    Varambally, R.5
  • 13
    • 0345276572 scopus 로고    scopus 로고
    • Synaptic slaughter in Alzheimer's disease
    • Coleman PD, Yao PJ (2003) Synaptic slaughter in Alzheimer's disease. Neurobiol Aging 24: 1023-1027.
    • (2003) Neurobiol Aging , vol.24 , pp. 1023-1027
    • Coleman, P.D.1    Yao, P.J.2
  • 14
    • 0031577277 scopus 로고    scopus 로고
    • Differential involvement of synaptic vesicle and presynaptic plasma membrane proteins in Alzheimer's disease
    • Shimohama S, Kamiya S, Taniguchi T, Akagawa K, Kimura J (1997) Differential involvement of synaptic vesicle and presynaptic plasma membrane proteins in Alzheimer's disease. Biochem Biophys Res Commun 236: 239-242.
    • (1997) Biochem Biophys Res Commun , vol.236 , pp. 239-242
    • Shimohama, S.1    Kamiya, S.2    Taniguchi, T.3    Akagawa, K.4    Kimura, J.5
  • 15
    • 0036024259 scopus 로고    scopus 로고
    • Reduction of synapsin in the hippocampus of patients with bipolar disorder and schizophrenia
    • Vawter MP, Thatcher L, Usen N, Hyde TM, Kleinman JE, et al. (2002) Reduction of synapsin in the hippocampus of patients with bipolar disorder and schizophrenia. Mol Psychiatry 7: 571-578.
    • (2002) Mol Psychiatry , vol.7 , pp. 571-578
    • Vawter, M.P.1    Thatcher, L.2    Usen, N.3    Hyde, T.M.4    Kleinman, J.E.5
  • 16
    • 0034254621 scopus 로고    scopus 로고
    • Levels of mRNAs encoding synaptic vesicle and synaptic plasma membrane proteins in the temporal cortex of elderly schizophrenic patients
    • Sokolov BP, Tcherepanov AA, Haroutunian V, Davis KL (2000) Levels of mRNAs encoding synaptic vesicle and synaptic plasma membrane proteins in the temporal cortex of elderly schizophrenic patients. Biol Psychiatry 48: 184-196.
    • (2000) Biol Psychiatry , vol.48 , pp. 184-196
    • Sokolov, B.P.1    Tcherepanov, A.A.2    Haroutunian, V.3    Davis, K.L.4
  • 18
    • 33644870366 scopus 로고    scopus 로고
    • Polymorphisms of DNA repair genes and risk of non-small cell lung cancer
    • Zienolddiny S, Campa D, Lind H, Ryberg D, Skaug V, et al. (2006) Polymorphisms of DNA repair genes and risk of non-small cell lung cancer. Carcinogenesis 27: 560-567.
    • (2006) Carcinogenesis , vol.27 , pp. 560-567
    • Zienolddiny, S.1    Campa, D.2    Lind, H.3    Ryberg, D.4    Skaug, V.5
  • 19
    • 0035808719 scopus 로고    scopus 로고
    • The XRCC1 399 glutamine allele is a risk factor for adenocarcinoma of the lung
    • Divine KK, Gilliland FD, Crowell RE, Stidley CA, Bocklage TJ, et al. (2001) The XRCC1 399 glutamine allele is a risk factor for adenocarcinoma of the lung. Mutat Res 461: 273-278.
    • (2001) Mutat Res , vol.461 , pp. 273-278
    • Divine, K.K.1    Gilliland, F.D.2    Crowell, R.E.3    Stidley, C.A.4    Bocklage, T.J.5
  • 21
    • 20744440176 scopus 로고    scopus 로고
    • DNA repair gene XRCC1 Arg399Gln polymorphism is associated with increased risk of uterine leiomyoma
    • Jeon YT, Kim JW, Park NH, Song YS, Kang SB, et al. (2005) DNA repair gene XRCC1 Arg399Gln polymorphism is associated with increased risk of uterine leiomyoma. Hum Reprod 20: 1586-1589.
    • (2005) Hum Reprod , vol.20 , pp. 1586-1589
    • Jeon, Y.T.1    Kim, J.W.2    Park, N.H.3    Song, Y.S.4    Kang, S.B.5
  • 22
    • 34748888853 scopus 로고    scopus 로고
    • Implementation of RxNorm as a terminology mediation standard for exchanging pharmacy medication between federal agencies
    • Parrish F, Do N, Bouhaddou O, Warnekar P (2006) Implementation of RxNorm as a terminology mediation standard for exchanging pharmacy medication between federal agencies. AMIA Annu Symp Proc. pp 1057.
    • (2006) AMIA Annu Symp Proc , pp. 1057
    • Parrish, F.1    Do, N.2    Bouhaddou, O.3    Warnekar, P.4
  • 24
  • 25
    • 0008922584 scopus 로고    scopus 로고
    • DrugDex , Thomson Healthcare
    • DrugDex (2007) DRUGDEX System. Thomson Healthcare.
    • (2007) DRUGDEX System
  • 27
    • 33846067524 scopus 로고    scopus 로고
    • PANTHER version 6: Protein sequence and function evolution data with expanded representation of biological pathways
    • Mi H, Guo N, Kejariwal A, Thomas PD (2007) PANTHER version 6: protein sequence and function evolution data with expanded representation of biological pathways. Nucleic Acids Res 35: D247-252.
    • (2007) Nucleic Acids Res , vol.35
    • Mi, H.1    Guo, N.2    Kejariwal, A.3    Thomas, P.D.4
  • 29
    • 34547846862 scopus 로고    scopus 로고
    • Finding disease-related genomic experiments within an international repository: First steps in translational bioinformatics
    • Butte AJ, Chen R (2006) Finding disease-related genomic experiments within an international repository: first steps in translational bioinformatics. Annual Symposium of the American Medical Informatics Association Proceedings. pp 106-110.
    • (2006) Annual Symposium of the American Medical Informatics Association Proceedings , pp. 106-110
    • Butte, A.J.1    Chen, R.2
  • 30
    • 0345863927 scopus 로고    scopus 로고
    • The Unified Medical Language System (UMLS): Integrating biomedical terminology
    • Bodenreider O (2004) The Unified Medical Language System (UMLS): integrating biomedical terminology. Nucleic Acids Res 32: D267-270.
    • (2004) Nucleic Acids Res , vol.32
    • Bodenreider, O.1
  • 31
    • 40549103533 scopus 로고    scopus 로고
    • Enabling integrative genomic analysis of high-impact human diseases through text mining
    • Dudley J, Butte AJ (2008) Enabling integrative genomic analysis of high-impact human diseases through text mining. Pac Symp Biocomput. pp 580-591.
    • (2008) Pac Symp Biocomput , pp. 580-591
    • Dudley, J.1    Butte, A.J.2
  • 32
    • 35748982114 scopus 로고    scopus 로고
    • AILUN: Reannotating gene expression data automatically
    • Chen R, Li L, Butte AJ (2007) AILUN: reannotating gene expression data automatically. Nat Methods 4: 879.
    • (2007) Nat Methods , vol.4 , pp. 879
    • Chen, R.1    Li, L.2    Butte, A.J.3
  • 34
    • 27144530248 scopus 로고    scopus 로고
    • Towards a proteome-scale map of the human protein-protein interaction network
    • Rual JF, Venkatesan K, Hao T, Hirozane-Kishikawa T, Dricot A, et al. (2005) Towards a proteome-scale map of the human protein-protein interaction network. Nature 437: 1173-1178.
    • (2005) Nature , vol.437 , pp. 1173-1178
    • Rual, J.F.1    Venkatesan, K.2    Hao, T.3    Hirozane-Kishikawa, T.4    Dricot, A.5
  • 35
    • 25144498379 scopus 로고    scopus 로고
    • A human protein-protein interaction network: A resource for annotating the proteome
    • Stelzl U, Worm U, Lalowski M, Haenig C, Brembeck FH, et al. (2005) A human protein-protein interaction network: a resource for annotating the proteome. Cell 122: 957-968.
    • (2005) Cell , vol.122 , pp. 957-968
    • Stelzl, U.1    Worm, U.2    Lalowski, M.3    Haenig, C.4    Brembeck, F.H.5
  • 38
    • 27744568481 scopus 로고    scopus 로고
    • The Plasmodium protein network diverges from those of other eukaryotes
    • Suthram S, Sittler T, Ideker T (2005) The Plasmodium protein network diverges from those of other eukaryotes. Nature 438: 108-112.
    • (2005) Nature , vol.438 , pp. 108-112
    • Suthram, S.1    Sittler, T.2    Ideker, T.3
  • 41
    • 34548539463 scopus 로고    scopus 로고
    • Understanding relationship between sequence and functional evolution in yeast proteins
    • Kim SH, Yi SV (2007) Understanding relationship between sequence and functional evolution in yeast proteins. Genetica 131: 151-156.
    • (2007) Genetica , vol.131 , pp. 151-156
    • Kim, S.H.1    Yi, S.V.2
  • 44
    • 0242490780 scopus 로고    scopus 로고
    • Cytoscape: A software environment for integrated models of biomolecular interaction networks
    • Shannon P, Markiel A, Ozier O, Baliga NS, Wang JT, et al. (2003) Cytoscape: a software environment for integrated models of biomolecular interaction networks. Genome Res 13: 2498-2504.
    • (2003) Genome Res , vol.13 , pp. 2498-2504
    • Shannon, P.1    Markiel, A.2    Ozier, O.3    Baliga, N.S.4    Wang, J.T.5
  • 45
    • 61449172037 scopus 로고    scopus 로고
    • Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
    • Huang da W, Sherman BT, Lempicki RA (2009) Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources. Nat Protoc 4: 44-57.
    • (2009) Nat Protoc , vol.4 , pp. 44-57
    • Huang da, W.1    Sherman, B.T.2    Lempicki, R.A.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.