Semantic MEDLINE: An advanced information management application for biomedicine

Information Services and Use

Volumn 31, Issue 1-2, 2011, Pages 15-21

  Rindflesch, Thomas C ^a   Kilicoglu, Halil ^a   Fiszman, Marcelo ^a   Rosemblat, Graciela ^a   Shin, Dongwook ^a  

^a NATIONAL INSTITUTES OF HEALTH   (United States)

Author keywords

automatic summarization; Biomedical information management; clock genes; graphical information representation; semantic processing

Indexed keywords

AUTOMATIC SUMMARIZATION; BIOMEDICAL INFORMATION MANAGEMENT; CLOCK GENES; GRAPHICAL INFORMATION; SEMANTIC PROCESSING;

COMPUTATIONAL LINGUISTICS; DATABASE SYSTEMS; GENES; INFORMATION MANAGEMENT; NATURAL LANGUAGE PROCESSING SYSTEMS; RESEARCH; SEMANTICS; USER INTERFACES; VISUALIZATION;

SEMANTIC WEB;

EID: 80052095985     PISSN: 01675265     EISSN: None     Source Type: Journal    
DOI: 10.3233/ISU-2011-0627     Document Type: Conference Paper

References (25)

1. C. B. Ahlers, M. Fiszman, D. Demner-Fushman, F. Lang and T. C. Rindflesch, Extracting semantic predications from MEDLINE citations for pharmacogenomics, in: Pacific Symposium on Biocomputing, World Scientific, Singapore, 2007, pp. 209-220.
2. S. Ananiadou and J. McNaught, eds, Text Mining for Biology and Biomedicine, Artech House Books, London, 2006.
3. A. R. Aronson and F. M. Lang, An overview of MetaMap: historical perspective and recent advances, Journal of the American Medical Informatics Association 17(2010), 229-236.
4. S. J. Athenikos and H. Han, Biomedical question answering: a survey, Computer Methods and Programs in Biomedicine 99(2010), 1-24.
5. M. Barnea, Z. Madar and O. Froy, High-fat diet followed by fasting disrupts circadian expression of adiponectin signaling pathway in muscle and adipose tissue, Obesity (Silver Spring) 18(2010), 230-238.
6. O. Bodenreider, The unified medical language system (UMLS): integrating biomedical terminology, Nucleic Acids Research 32 (2004), D267-D270. (Pubitemid 38081653)
7. J. Bos and S. Pulman, eds, Proc. 9th International Conference on Computational Semantics (IWCS) and International Workshop on Computational Semantics, Oxford, 2011.
8. K. B. Cohen, O. Bodenreider and L. Hirschman, Linking biomedical information through text mining: session introduction, in: Pacific Symposium on Biocomputing, World Scientific, Singapore, 2006, pp. 1-3.
9. M. Fiszman, T. C. Rindflesch and H. Kilicoglu, Abstraction summarization for managing the biomedical research literature, in: Proc. HLT-NAACL Workshop on Computational Lexical Semantics, Association for Computational Linguistics, Stroudsburg, 2004, pp. 76-83.
10. O. Froy, Metabolism and circadian rhythms - implications for obesity, Endocrine Reviews 31(2010), 1-24.
11. M. C. Hsieh, S. C. Yang, H. L. Tseng, L. L. Hwang, C. T. Chen and K. R. Shieh, Abnormal expressions of circadian-clock and circadian clock-controlled genes in the livers and kidneys of long-term, high-fat-diet-treated mice, International Journal of Obesity 34(2010), 227-239.
12. B. L. Humphreys, D. A. Lindberg, H. M. Schoolman and G. O. Barnett, The unified medical language system: an informatics research collaboration, Journal of the American Medical Informatics Association 5(1998), 1-11. (Pubitemid 28207350)
13. A. Keselman, G. Rosemblat, H. Kilicoglu, M. Fiszman, H. Jin, D. Shin and T. C. Rindflesch, Adapting semantic natural language processing technology to address information overload in influenza epidemic management, Journal of the American Society for Information Science and Technology 61(2010), 2531-2543.
14. H. Kilicoglu, M. Fiszman, A. Rodriguez, D. Shin, A. M. Ripple and T. C. Rindflesch, Semantic MEDLINE: a web application to manage the results of PubMed searches, in: Proc. 3rd International Symposium in Semantic Mining in Biomedicine, European Bioinformatics Institute, Hinxton, 2008, pp. 69-76.
15. J. Kovac, J. Husse and H. Oster, A time to fast, a time to feast: the crosstalk between metabolism and the circadian clock, Molecules and Cells 28(2009), 75-80.
16. P. L. Lowrey and J. S. Takahashi, Mammalian circadian biology: elucidating genome-wide levels of temporal organization, Annual Review of Genomics and Human Genetics 5(2004), 407-441. (Pubitemid 39362752)
17. W. T. Moss, Common peculiarities of patients with adenocarcinoma of the endometrium with special reference to obesity, body build, diabetes and hypertension, American Journal of Roentgenology and Radium Therapy 58(1947), 203-210.
18. T. C. Rindflesch and M. Fiszman, The interaction of domain knowledge and linguistic structure in natural language processing: interpreting hypernymic propositions in biomedical text, Journal of Biomedical Informatics 36(2003), 462-477. (Pubitemid 38169374)
19. T. C. Rindflesch, M. Fiszman and B. Libbus, Semantic interpretation for the biomedical research literature, in: Medical Informatics: Knowledge Management and Data Mining in Biomedicine, H. Chen, S. S. Fuller, C. Friedman and W. Hersh, eds, Springer, New York, 2005, pp. 399-422.
20. T. C. Rindflesch, B. Libbus, D. Hristovski, A. R. Aronson and H. Kilicoglu, Semantic relations asserting the etiology of genetic diseases, in: Proc. AMIA Annual Symposium, American Medical Informatics Association, Bethesda, MD, 2003, pp. 554-558.
21. D. Satterthwaite, Emerging technologies to speed information access, Information Services & Use 30(2010), 99-105.
22. D. R. Swanson, Fish oil, Raynaud's syndrome, and undiscovered public knowledge, Perspectives in Biology and Medicine 30(1986), 7-18.
23. J. S. Takahashi, Finding new clock components: past and future, Journal of Biological Rhythms 19(2004), 339-347. (Pubitemid 39238203)
24. M. Weeber, J. A. Kors and B. Mons, Online tools to support literature-based discovery in the life sciences, Briefings in Bioinformatics 6(2005), 277-286. (Pubitemid 41614549)
25. X. Yang, P. A. Wood, C. M. Ansell, D. F. Quiton, E. Y. Oh, J. Du-Quiton and W. J. Hrushesky, The circadian clock gene Per1 suppresses cancer cell proliferation and tumor growth at specific times of day, Chronobiology International 26(2009), 1323-3139.