-
1
-
-
0015454130
-
Structure and function of the bacterial ribosome
-
Kurland CG. 1972. Structure and function of the bacterial ribosome. Annu. Rev. Biochem. 41:377-408. http://dx.doi.org/10.1146/annurev.bi.41.070172.002113.
-
(1972)
Annu. Rev. Biochem.
, vol.41
, pp. 377-408
-
-
Kurland, C.G.1
-
2
-
-
6644228831
-
Bacterial ribosome
-
Nomura M. 1970. Bacterial ribosome. Bacteriol. Rev. 34:228-277.
-
(1970)
Bacteriol. Rev.
, vol.34
, pp. 228-277
-
-
Nomura, M.1
-
3
-
-
70350602056
-
The structure of the ribosome with elongation factor Gtrapped in the posttranslocational state
-
Gao YG, Selmer M, Dunham CM, Weixlbaumer A, Kelley AC, Ramakrishnan V. 2009. The structure of the ribosome with elongation factor Gtrapped in the posttranslocational state. Science 326:694-699. http://dx.doi.org/10.1126/science.1179709.
-
(2009)
Science
, vol.326
, pp. 694-699
-
-
Gao, Y.G.1
Selmer, M.2
Dunham, C.M.3
Weixlbaumer, A.4
Kelley, A.C.5
Ramakrishnan, V.6
-
4
-
-
0034637161
-
The structural basis of ribosome activity in peptide bond synthesis
-
Nissen P, Hansen J, Ban N, Moore PB, Steitz TA. 2000. The structural basis of ribosome activity in peptide bond synthesis. Science 289:920-930. http://dx.doi.org/10.1126/science.289.5481.920.
-
(2000)
Science
, vol.289
, pp. 920-930
-
-
Nissen, P.1
Hansen, J.2
Ban, N.3
Moore, P.B.4
Steitz, T.A.5
-
5
-
-
0035805229
-
Recognition of cognate transfer RNA by the 30S ribosomal subunit
-
Ogle JM, Brodersen DE, Clemons WM, Tarry MJ, Carter AP, Ramakrishnan V. 2001. Recognition of cognate transfer RNA by the 30S ribosomal subunit. Science 292:897-902. http://dx.doi.org/10.1126/science.1060612.
-
(2001)
Science
, vol.292
, pp. 897-902
-
-
Ogle, J.M.1
Brodersen, D.E.2
Clemons, W.M.3
Tarry, M.J.4
Carter, A.P.5
Ramakrishnan, V.6
-
6
-
-
70350654363
-
What recent ribosome structures have revealed about the mechanism of translation
-
Schmeing TM, Ramakrishnan V. 2009. What recent ribosome structures have revealed about the mechanism of translation. Nature 461:1234-1242. http://dx.doi.org/10.1038/nature08403.
-
(2009)
Nature
, vol.461
, pp. 1234-1242
-
-
Schmeing, T.M.1
Ramakrishnan, V.2
-
7
-
-
70350588648
-
The crystal structure of the ribosome bound to EF-Tu and aminoacyl-tRNA
-
Schmeing TM, Voorhees RM, Kelley AC, Gao YG, Murphy FV, Weir JR, Ramakrishnan V. 2009. The crystal structure of the ribosome bound to EF-Tu and aminoacyl-tRNA. Science 326:688-694. http://dx.doi.org/10.1126/science.1179700.
-
(2009)
Science
, vol.326
, pp. 688-694
-
-
Schmeing, T.M.1
Voorhees, R.M.2
Kelley, A.C.3
Gao, Y.G.4
Murphy, F.V.5
Weir, J.R.6
Ramakrishnan, V.7
-
8
-
-
0035805213
-
Crystal structure of the ribosome at 5.5 Å resolution
-
Yusupov MM, Yusupova GZ, Baucom A, Lieberman K, Earnest TN, Cate JH, Noller HF. 2001. Crystal structure of the ribosome at 5.5 Å resolution. Science 292:883-896. http://dx.doi.org/10.1126/science.1060089.
-
(2001)
Science
, vol.292
, pp. 883-896
-
-
Yusupov, M.M.1
Yusupova, G.Z.2
Baucom, A.3
Lieberman, K.4
Earnest, T.N.5
Cate, J.H.6
Noller, H.F.7
-
9
-
-
0034596998
-
Ribosomal protein L2 is involved in the association of the ribosomal subunits, tRNA binding to A and P sites and peptidyl transfer
-
Diedrich G, Spahn CM, Stelzl U, Schafer MA, Wooten T, Bochkariov DE, Cooperman BS, Traut RR, Nierhaus KH. 2000. Ribosomal protein L2 is involved in the association of the ribosomal subunits, tRNA binding to A and P sites and peptidyl transfer. EMBO J. 19:5241-5250. http://dx.doi.org/10.1093/emboj/19.19.5241.
-
(2000)
EMBO J.
, vol.19
, pp. 5241-5250
-
-
Diedrich, G.1
Spahn, C.M.2
Stelzl, U.3
Schafer, M.A.4
Wooten, T.5
Bochkariov, D.E.6
Cooperman, B.S.7
Traut, R.R.8
Nierhaus, K.H.9
-
10
-
-
0033524397
-
Characterization of functionally active subribosomal particles from Thermus aquaticus
-
Khaitovich P, Mankin AS, Green R, Lancaster L, Noller HF. 1999. Characterization of functionally active subribosomal particles from Thermus aquaticus. Proc. Natl. Acad. Sci. U. S. A. 96:85-90. http://dx.doi.org/10.1073/pnas.96.1.85.
-
(1999)
Proc. Natl. Acad. Sci. U. S. A.
, vol.96
, pp. 85-90
-
-
Khaitovich, P.1
Mankin, A.S.2
Green, R.3
Lancaster, L.4
Noller, H.F.5
-
11
-
-
0020341129
-
Minimal set of ribosomal components for reconstitution of the peptidyltransferase activity
-
Schulze H, Nierhaus KH. 1982. Minimal set of ribosomal components for reconstitution of the peptidyltransferase activity. EMBO J. 1:609-613.
-
(1982)
EMBO J.
, vol.1
, pp. 609-613
-
-
Schulze, H.1
Nierhaus, K.H.2
-
12
-
-
0032522579
-
Functional implications of ribosomal protein L2 in protein biosynthesis as shown by in vivo replacement studies
-
Uhlein M, Weglöhner W, Urlaub H, Wittmann-Liebold B. 1998. Functional implications of ribosomal protein L2 in protein biosynthesis as shown by in vivo replacement studies. Biochem. J. 331:423-430.
-
(1998)
Biochem. J.
, vol.331
, pp. 423-430
-
-
Uhlein, M.1
Weglöhner, W.2
Urlaub, H.3
Wittmann-Liebold, B.4
-
13
-
-
0035808304
-
Localization of the protein L2 in the 50S subunit and the 70S E. coli ribosome
-
Willumeit R, Forthmann S, Beckmann J, Diedrich G, Ratering R, Stuhrmann HB, Nierhaus KH. 2001. Localization of the protein L2 in the 50S subunit and the 70S E. coli ribosome. J. Mol. Biol. 305:167-177. http://dx.doi.org/10.1006/jmbi.2000.4289.
-
(2001)
J. Mol. Biol.
, vol.305
, pp. 167-177
-
-
Willumeit, R.1
Forthmann, S.2
Beckmann, J.3
Diedrich, G.4
Ratering, R.5
Stuhrmann, H.B.6
Nierhaus, K.H.7
-
14
-
-
52949141857
-
Molecular signatures of ribosomal evolution
-
Roberts E, Sethi A, Montoya J, Woese CR, Luthey-Schulten Z. 2008. Molecular signatures of ribosomal evolution. Proc. Natl. Acad. Sci. U. S. A. 105:13953-13958. http://dx.doi.org/10.1073/pnas.0804861105.
-
(2008)
Proc. Natl. Acad. Sci. U. S. A.
, vol.105
, pp. 13953-13958
-
-
Roberts, E.1
Sethi, A.2
Montoya, J.3
Woese, C.R.4
Luthey-Schulten, Z.5
-
15
-
-
31544450286
-
Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection
-
2006.0008
-
Baba T, Ara T, Hasegawa M, Takai Y, Okumura Y, Baba M, Datsenko KA, Tomita M, Wanner BL, Mori H. 2006. Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection. Mol. Syst. Biol. 2:2006.0008. http://dx.doi.org/10.1038/msb4100050.
-
(2006)
Mol. Syst. Biol.
, vol.2
-
-
Baba, T.1
Ara, T.2
Hasegawa, M.3
Takai, Y.4
Okumura, Y.5
Baba, M.6
Datsenko, K.A.7
Tomita, M.8
Wanner, B.L.9
Mori, H.10
-
16
-
-
80054861886
-
Systematic chromosomal deletion of bacterial ribosomal protein genes
-
Shoji S, Dambacher CM, Shajani Z, Williamson JR, Schultz PG. 2011. Systematic chromosomal deletion of bacterial ribosomal protein genes. J. Mol. Biol. 413:751-761. http://dx.doi.org/10.1016/j.jmb.2011.09.004.
-
(2011)
J. Mol. Biol.
, vol.413
, pp. 751-761
-
-
Shoji, S.1
Dambacher, C.M.2
Shajani, Z.3
Williamson, J.R.4
Schultz, P.G.5
-
17
-
-
84869113635
-
Inactivation of ribosomal protein genes in Bacillus subtilis reveals importance of each ribosomal protein for cell proliferation and cell differentiation
-
Akanuma G, Nanamiya H, Natori Y, Yano K, Suzuki S, Omata S, Ishizuka M, Sekine Y, Kawamura F. 2012. Inactivation of ribosomal protein genes in Bacillus subtilis reveals importance of each ribosomal protein for cell proliferation and cell differentiation. J. Bacteriol. 194: 6282-6291. http://dx.doi.org/10.1128/JB.01544-12.
-
(2012)
J. Bacteriol.
, vol.194
, pp. 6282-6291
-
-
Akanuma, G.1
Nanamiya, H.2
Natori, Y.3
Yano, K.4
Suzuki, S.5
Omata, S.6
Ishizuka, M.7
Sekine, Y.8
Kawamura, F.9
-
18
-
-
0026681748
-
Conserved gene arrangement in the origin region of the Streptomyces coelicolor chromosome
-
Calcutt MJ, Schmidt FJ. 1992. Conserved gene arrangement in the origin region of the Streptomyces coelicolor chromosome. J. Bacteriol. 174: 3220-3226.
-
(1992)
J. Bacteriol.
, vol.174
, pp. 3220-3226
-
-
Calcutt, M.J.1
Schmidt, F.J.2
-
19
-
-
0025052574
-
Structure of the dnaA region of Micrococcus luteus: conservations and variations among eubacteria
-
Fujita MQ, Yoshikawa H, Ogasawara N. 1990. Structure of the dnaA region of Micrococcus luteus: conservations and variations among eubacteria. Gene 93:73-78. http://dx.doi.org/10.1016/0378-1119(90)90138-H.
-
(1990)
Gene
, vol.93
, pp. 73-78
-
-
Fujita, M.Q.1
Yoshikawa, H.2
Ogasawara, N.3
-
20
-
-
0020338083
-
The nucleotide sequence of the dnaA gene promoter and of the adjacent rpmH gene, coding for the ribosomal protein L34, of Escherichia coli
-
Hansen FG, Hansen EB, Atlung T. 1982. The nucleotide sequence of the dnaA gene promoter and of the adjacent rpmH gene, coding for the ribosomal protein L34, of Escherichia coli. EMBO J. 1:1043-1048.
-
(1982)
EMBO J.
, vol.1
, pp. 1043-1048
-
-
Hansen, F.G.1
Hansen, E.B.2
Atlung, T.3
-
21
-
-
0022423296
-
Structure and function of the region of the replication origin of the Bacillus subtilis chromosom. III. Nucleotide sequence of some 10,000 base pairs in the origin region
-
Moriya S, Ogasawara N, Yoshikawa H. 1985. Structure and function of the region of the replication origin of the Bacillus subtilis chromosome. III. Nucleotide sequence of some 10,000 base pairs in the origin region. Nucleic Acids Res. 13:2251-2265.
-
(1985)
Nucleic Acids Res.
, vol.13
, pp. 2251-2265
-
-
Moriya, S.1
Ogasawara, N.2
Yoshikawa, H.3
-
22
-
-
0026490310
-
Nucleotide sequence of the Borrelia burgdorferi rpmH gene encoding ribosomal protein L34
-
Old IG, Margarita D, Saint Girons I. 1992. Nucleotide sequence of the Borrelia burgdorferi rpmH gene encoding ribosomal protein L34. Nucleic Acids. Res. 20:6097. http://dx.doi.org/10.1093/nar/20.22.6097.
-
(1992)
Nucleic Acids. Res.
, vol.20
, pp. 6097
-
-
Old, I.G.1
Margarita, D.2
Saint Girons, I.3
-
23
-
-
0023664556
-
Incorporation of six additional proteins to complete the assembly map of the 50 S subunit from Escherichia coli ribosomes
-
Herold M, Nierhaus KH. 1987. Incorporation of six additional proteins to complete the assembly map of the 50 S subunit from Escherichia coli ribosomes. J. Biol. Chem. 262:8826-8833.
-
(1987)
J. Biol. Chem.
, vol.262
, pp. 8826-8833
-
-
Herold, M.1
Nierhaus, K.H.2
-
24
-
-
0028928404
-
Relationship of the expression of the S20 and L34 ribosomal proteins to polyamine biosynthesis in Escherichia coli
-
Panagiotidis CA, Huang SC, Canellakis ES. 1995. Relationship of the expression of the S20 and L34 ribosomal proteins to polyamine biosynthesis in Escherichia coli. Int. J. Biochem. Cell Biol. 27:157-168. http://dx.doi.org/10.1016/1357-2725(94)00068-M.
-
(1995)
Int. J. Biochem. Cell Biol.
, vol.27
, pp. 157-168
-
-
Panagiotidis, C.A.1
Huang, S.C.2
Canellakis, E.S.3
-
25
-
-
0037007466
-
Formation of 70S ribosomes: large activation energy is required for the adaptation of exclusively the small ribosomal subunit
-
Blaha G, Burkhardt N, Nierhaus KH. 2002. Formation of 70S ribosomes: large activation energy is required for the adaptation of exclusively the small ribosomal subunit. Biophys. Chem. 96:153-161. http://dx.doi.org/10.1016/S0301-4622(02)00021-2.
-
(2002)
Biophys. Chem.
, vol.96
, pp. 153-161
-
-
Blaha, G.1
Burkhardt, N.2
Nierhaus, K.H.3
-
26
-
-
33749565152
-
Mutations in the intersubunit bridge regions of 23 S rRNA
-
Liiv A, O'Connor M. 2006. Mutations in the intersubunit bridge regions of 23 S rRNA. J. Biol. Chem. 281:29850-29862. http://dx.doi.org/10.1074/jbc.M603013200.
-
(2006)
J. Biol. Chem.
, vol.281
, pp. 29850-29862
-
-
Liiv, A.1
O'Connor, M.2
-
28
-
-
0034548166
-
Magnesium ions mediate contacts between phosphoryl oxygens at positions 2122 and 2176 of the 23S rRNA and ribosomal protein L1
-
Drygin D, Zimmermann RA. 2000. Magnesium ions mediate contacts between phosphoryl oxygens at positions 2122 and 2176 of the 23S rRNA and ribosomal protein L1. RNA. 6:1714-1726. http://dx.doi.org/10.1017/S1355838200001436.
-
(2000)
RNA.
, vol.6
, pp. 1714-1726
-
-
Drygin, D.1
Zimmermann, R.A.2
-
29
-
-
4344569647
-
The contribution of metal ions to the structural stability of the large ribosomal subunit
-
Klein DJ, Moore PB, Steitz TA. 2004. The contribution of metal ions to the structural stability of the large ribosomal subunit. RNA 10:1366-1379. http://dx.doi.org/10.1261/rna.7390804.
-
(2004)
RNA
, vol.10
, pp. 1366-1379
-
-
Klein, D.J.1
Moore, P.B.2
Steitz, T.A.3
-
30
-
-
84864049910
-
RNA-magnesium-protein interactions in large ribosomal subunit
-
Petrov AS, Bernier CR, Hsiao C, Okafor CD, Tannenbaum E, Stern J, Gaucher E, Schneider D, Hud NV, Harvey SC, Williams LD. 2012. RNA-magnesium-protein interactions in large ribosomal subunit. J. Phys. Chem. B 116:8113-8120. http://dx.doi.org/10.1021/jp304723w.
-
(2012)
J. Phys. Chem. B
, vol.116
, pp. 8113-8120
-
-
Petrov, A.S.1
Bernier, C.R.2
Hsiao, C.3
Okafor, C.D.4
Tannenbaum, E.5
Stern, J.6
Gaucher, E.7
Schneider, D.8
Hud, N.V.9
Harvey, S.C.10
Williams, L.D.11
-
31
-
-
0037184092
-
Binding of ribosome recycling factor to ribosomes, comparison with tRNA
-
Hirokawa G, Kiel MC, Muto A, Kawai G, Igarashi K, Kaji H, Kaji A. 2002. Binding of ribosome recycling factor to ribosomes, comparison with tRNA. J. Biol. Chem. 277:35847-35852. http://dx.doi.org/10.1074/jbc.M206295200.
-
(2002)
J. Biol. Chem.
, vol.277
, pp. 35847-35852
-
-
Hirokawa, G.1
Kiel, M.C.2
Muto, A.3
Kawai, G.4
Igarashi, K.5
Kaji, H.6
Kaji, A.7
-
32
-
-
0020446681
-
Non-exclusion principle of Ac-PhetRNAPhe interaction with the donor and acceptor sites of Escherichia coli ribosomes
-
Kirillov SV, Semenkov YP. 1982. Non-exclusion principle of Ac-PhetRNAPhe interaction with the donor and acceptor sites of Escherichia coli ribosomes. FEBS Lett. 148:235-238. http://dx.doi.org/10.1016/0014-5793(82)80814-4.
-
(1982)
FEBS Lett.
, vol.148
, pp. 235-238
-
-
Kirillov, S.V.1
Semenkov, Y.P.2
-
34
-
-
33749354360
-
Structure of the 70S ribosome complexed with mRNA and tRNA
-
Selmer M, Dunham CM, Murphy FV, Weixlbaumer A, Petry S, Kelley AC, Weir JR, Ramakrishnan V. 2006. Structure of the 70S ribosome complexed with mRNA and tRNA. Science 313:1935-1942. http://dx.doi.org/10.1126/science.1131127.
-
(2006)
Science
, vol.313
, pp. 1935-1942
-
-
Selmer, M.1
Dunham, C.M.2
Murphy, F.V.3
Weixlbaumer, A.4
Petry, S.5
Kelley, A.C.6
Weir, J.R.7
Ramakrishnan, V.8
-
35
-
-
0036312073
-
Structural and catalytic chemistry of magnesium dependent enzymes
-
Cowan JA. 2002. Structural and catalytic chemistry of magnesium dependent enzymes. Biometals 15:225-235. http://dx.doi.org/10.1023/A:1016022730880.
-
(2002)
Biometals
, vol.15
, pp. 225-235
-
-
Cowan, J.A.1
-
36
-
-
0035906322
-
Role of magnesium in genomic stability
-
Hartwig A. 2001. Role of magnesium in genomic stability. Mutat. Res. 475:113-121. http://dx.doi.org/10.1016/S0027-5107(01)00074-4.
-
(2001)
Mutat. Res.
, vol.475
, pp. 113-121
-
-
Hartwig, A.1
-
37
-
-
0004136246
-
-
2nd ed. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
-
Sambrook J, Fritsch EF, Maniatis T. 1989. Molecular cloning: a laboratory manual, 2nd ed. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
-
(1989)
Molecular cloning: a laboratory manual
-
-
Sambrook, J.1
Fritsch, E.F.2
Maniatis, T.3
-
38
-
-
0033996421
-
Natural genetic competence in Bacillus subtilis natto OK2
-
Ashikaga S, Nanamiya H, Ohashi Y, Kawamura F. 2000. Natural genetic competence in Bacillus subtilis natto OK2. J. Bacteriol. 182:2411-2415. http://dx.doi.org/10.1128/JB.182.9.2411-2415.2000.
-
(2000)
J. Bacteriol.
, vol.182
, pp. 2411-2415
-
-
Ashikaga, S.1
Nanamiya, H.2
Ohashi, Y.3
Kawamura, F.4
-
39
-
-
0001134202
-
Requirements for transformation in Bacillus subtilis
-
Anagnostopoulos C, Spizizen J. 1961. Requirements for transformation in Bacillus subtilis. J. Bacteriol. 81:741-746.
-
(1961)
J. Bacteriol.
, vol.81
, pp. 741-746
-
-
Anagnostopoulos, C.1
Spizizen, J.2
-
40
-
-
0035960692
-
Rapid orientated cloning in a shuttle vector allowing modulated gene expression in Bacillus subtilis
-
Joseph P, Fantino JR, Herbaud ML, Denizot F. 2001. Rapid orientated cloning in a shuttle vector allowing modulated gene expression in Bacillus subtilis. FEMS Microbiol. Lett. 205:91-97. http://dx.doi.org/10.1111/j.1574-6968.2001.tb10930.x.
-
(2001)
FEMS Microbiol. Lett.
, vol.205
, pp. 91-97
-
-
Joseph, P.1
Fantino, J.R.2
Herbaud, M.L.3
Denizot, F.4
-
41
-
-
34548253368
-
Structure and mechanism of a metal-sensing regulatory RNA
-
Dann CE, III, Wakeman CA, Sieling CL, Baker SC, Irnov I, Winkler WC. 2007. Structure and mechanism of a metal-sensing regulatory RNA. Cell 130:878-892. http://dx.doi.org/10.1016/j.cell.2007.06.051.
-
(2007)
Cell
, vol.130
, pp. 878-892
-
-
Dann III, C.E.1
Wakeman, C.A.2
Sieling, C.L.3
Baker, S.C.4
Irnov, I.5
Winkler, W.C.6
-
42
-
-
3843119815
-
spoIVH (ykvV), a requisite cortex formation gene, is expressed in both sporulating compartments of Bacillus subtilis
-
Imamura D, Kobayashi K, Sekiguchi J, Ogasawara N, Takeuchi M, Sato T. 2004. spoIVH (ykvV), a requisite cortex formation gene, is expressed in both sporulating compartments of Bacillus subtilis. J. Bacteriol. 186:5450-5459. http://dx.doi.org/10.1128/JB.186.16.5450-5459.2004.
-
(2004)
J. Bacteriol.
, vol.186
, pp. 5450-5459
-
-
Imamura, D.1
Kobayashi, K.2
Sekiguchi, J.3
Ogasawara, N.4
Takeuchi, M.5
Sato, T.6
-
43
-
-
68549104404
-
The Sequence Alignment/Map (SAM) format and SAMtools
-
Li H, Handsaker B, Wysoker A, Fennell T, Ruan J, Homer N, Marth G, Abecasis G, Durbin R, 1000 Genome Project Data Processing Subgroup. 2009. The Sequence Alignment/Map (SAM) format and SAMtools. Bioinformatics 25:2078-2079. http://dx.doi.org/10.1093/bioinformatics/btp352.
-
(2009)
Bioinformatics
, vol.25
, pp. 2078-2079
-
-
Li, H.1
Handsaker, B.2
Wysoker, A.3
Fennell, T.4
Ruan, J.5
Homer, N.6
Marth, G.7
Abecasis, G.8
Durbin, R.9
-
44
-
-
67649884743
-
Fast and accurate short read alignment with Burrows-Wheeler transform
-
Li H, Durbin R. 2009. Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics 25:1754-1760. http://dx.doi.org/10.1093/bioinformatics/btp324.
-
(2009)
Bioinformatics
, vol.25
, pp. 1754-1760
-
-
Li, H.1
Durbin, R.2
-
45
-
-
69549116107
-
BreakDancer: an algorithm for high-resolution mapping of genomic structural variation
-
Chen K, Wallis JW, McLellan MD, Larson DE, Kalicki JM, Pohl CS, McGrath SD, Wendl MC, Zhang Q, Lock DP, Shi X, Fulton RS, Ley TJ, Wilson RK, Ding L, Mardis ER. 2009. BreakDancer: an algorithm for high-resolution mapping of genomic structural variation. Nat. Methods 6:677-681. http://dx.doi.org/10.1038/nmeth.1363.
-
(2009)
Nat. Methods
, vol.6
, pp. 677-681
-
-
Chen, K.1
Wallis, J.W.2
McLellan, M.D.3
Larson, D.E.4
Kalicki, J.M.5
Pohl, C.S.6
McGrath, S.D.7
Wendl, M.C.8
Zhang, Q.9
Lock, D.P.10
Shi, X.11
Fulton, R.S.12
Ley, T.J.13
Wilson, R.K.14
Ding, L.15
Mardis, E.R.16
-
46
-
-
78651271733
-
Integrative genomics viewer
-
Robinson JT, Thorvaldsdóttir H, Winckler W, Guttman M, Lander ES, Getz G, Mesirov JP. 2011. Integrative genomics viewer. Nat. Biotechnol. 29:24-26. http://dx.doi.org/10.1038/nbt.1754.
-
(2011)
Nat. Biotechnol.
, vol.29
, pp. 24-26
-
-
Robinson, J.T.1
Thorvaldsdóttir, H.2
Winckler, W.3
Guttman, M.4
Lander, E.S.5
Getz, G.6
Mesirov, J.P.7
-
47
-
-
33845703824
-
A fail-safe system for the ribosome under zinclimiting conditions in Bacillus subtilis
-
Natori Y, Nanamiya H, Akanuma G, Kosono S, Kudo T, Ochi K, Kawamura F. 2007. A fail-safe system for the ribosome under zinclimiting conditions in Bacillus subtilis. Mol. Microbiol. 63:294-307. http://dx.doi.org/10.1111/j.1365-2958.2006.05513.x.
-
(2007)
Mol. Microbiol.
, vol.63
, pp. 294-307
-
-
Natori, Y.1
Nanamiya, H.2
Akanuma, G.3
Kosono, S.4
Kudo, T.5
Ochi, K.6
Kawamura, F.7
-
48
-
-
84901716036
-
Enhanced expression of Bacillus subtilis yaaA can restore both the growth and sporulation defects caused by mutation of rplB, encoding ribosomal protein L2
-
Suzuki S, Tanigawa O, Akanuma G, Nanamiya H, Kawamura F, Tagami K, Nomura N, Kawabata T, Sekine Y. 2014. Enhanced expression of Bacillus subtilis yaaA can restore both the growth and sporulation defects caused by mutation of rplB, encoding ribosomal protein L2. Microbiology 160:1040-1053. http://dx.doi.org/10.1099/mic.0.076463-0.
-
(2014)
Microbiology
, vol.160
, pp. 1040-1053
-
-
Suzuki, S.1
Tanigawa, O.2
Akanuma, G.3
Nanamiya, H.4
Kawamura, F.5
Tagami, K.6
Nomura, N.7
Kawabata, T.8
Sekine, Y.9
-
49
-
-
11144356954
-
Zinc is a key factor in controlling alternation of two types of L31 protein in the Bacillus subtilis ribosome
-
Nanamiya H, Akanuma G, Natori Y, Murayama R, Kosono S, Kudo T, Kobayashi K, Ogasawara N, Park SM, Ochi K, Kawamura F. 2004. Zinc is a key factor in controlling alternation of two types of L31 protein in the Bacillus subtilis ribosome. Mol. Microbiol. 52:273-283. http://dx.doi.org/10.1111/j.1365-2958.2003.03972.x.
-
(2004)
Mol. Microbiol.
, vol.52
, pp. 273-283
-
-
Nanamiya, H.1
Akanuma, G.2
Natori, Y.3
Murayama, R.4
Kosono, S.5
Kudo, T.6
Kobayashi, K.7
Ogasawara, N.8
Park, S.M.9
Ochi, K.10
Kawamura, F.11
-
50
-
-
0022981509
-
Analysis of Escherichia coli ribosomal proteins by an improved two dimensional gel electrophoresis. I. Detection of four new proteins
-
Wada A. 1986. Analysis of Escherichia coli ribosomal proteins by an improved two dimensional gel electrophoresis. I. Detection of four new proteins. J. Biochem. 100:1583-1594.
-
(1986)
J. Biochem.
, vol.100
, pp. 1583-1594
-
-
Wada, A.1
-
52
-
-
70450222720
-
2+ homeostasis
-
2+ homeostasis. EMBO J. 28:3602-3612. http://dx.doi.org/10.1038/emboj.2009.288.
-
(2009)
EMBO J.
, vol.28
, pp. 3602-3612
-
-
Hattori, M.1
Iwase, N.2
Furuya, N.3
Tanaka, Y.4
Tsukazaki, T.5
Ishitani, R.6
Maguire, M.E.7
Ito, K.8
Maturana, A.9
Nureki, O.10
-
55
-
-
0019401975
-
High magnesium content of Escherichia coli B
-
Moncany ML, Kellenberger E. 1981. High magnesium content of Escherichia coli B. Experientia 37:846-847. http://dx.doi.org/10.1007/BF01985672.
-
(1981)
Experientia
, vol.37
, pp. 846-847
-
-
Moncany, M.L.1
Kellenberger, E.2
-
56
-
-
70350452739
-
2+ transport proteins enhances the survival of Salmonella enterica at high temperature
-
2+ transport proteins enhances the survival of Salmonella enterica at high temperature. Proc. Natl. Acad. Sci. U. S. A. 106:17522-17527. http://dx.doi.org/10.1073/pnas.0906160106.
-
(2009)
Proc. Natl. Acad. Sci. U. S. A.
, vol.106
, pp. 17522-17527
-
-
O'Connor, K.1
Fletcher, S.A.2
Csonka, L.N.3
-
57
-
-
0015217040
-
Magnesium transport in Escherichia coli
-
Silver S, Clark D. 1971. Magnesium transport in Escherichia coli. J. Biol. Chem. 246:569-576.
-
(1971)
J. Biol. Chem.
, vol.246
, pp. 569-576
-
-
Silver, S.1
Clark, D.2
-
58
-
-
34548728025
-
Ribosome biogenesis and the translation process in Escherichia coli
-
Kaczanowska M, Rydén-Aulin M. 2007. Ribosome biogenesis and the translation process in Escherichia coli. Microbiol. Mol. Biol. Rev. 71:477-494. http://dx.doi.org/10.1128/MMBR.00013-07.
-
(2007)
Microbiol. Mol. Biol. Rev.
, vol.71
, pp. 477-494
-
-
Kaczanowska, M.1
Rydén-Aulin, M.2
-
59
-
-
0021929046
-
Manipulation of intracellular magnesium content in polymyxin B nonapeptide-sensitized Escherichia coli by ionophore A23187
-
Alatossava T, Jutte H, Kuhn A, Kellenberger E. 1985. Manipulation of intracellular magnesium content in polymyxin B nonapeptide-sensitized Escherichia coli by ionophore A23187. J. Bacteriol. 162:413-419.
-
(1985)
J. Bacteriol.
, vol.162
, pp. 413-419
-
-
Alatossava, T.1
Jutte, H.2
Kuhn, A.3
Kellenberger, E.4
-
61
-
-
77957861595
-
Bacillus subtilis mutants harbouring a single copy of the rRNA operon exhibit sever defects in growth and sporulation
-
Nanamiya H, Sato M, Masuda K, Sato M, Wada T, Suzuki S, Natori Y, Katano M, Akanuma G, Kawamura F. 2010. Bacillus subtilis mutants harbouring a single copy of the rRNA operon exhibit sever defects in growth and sporulation. Microbiology 156:2944-2952. http://dx.doi.org/10.1099/mic.0.035295-0.
-
(2010)
Microbiology
, vol.156
, pp. 2944-2952
-
-
Nanamiya, H.1
Sato, M.2
Masuda, K.3
Sato, M.4
Wada, T.5
Suzuki, S.6
Natori, Y.7
Katano, M.8
Akanuma, G.9
Kawamura, F.10
-
62
-
-
84886713947
-
Multiple rRNA operons are essential for efficient cell growth and sporulation as well as outgrowth in Bacillus subtilis
-
Yano K, Wada T, Suzuki S, Tagami K, Matsumoto T, Shiwa Y, Ishige T, Kawaguchi Y, Masuda K, Akanuma G, Nanamiya H, Niki H, Yoshikawa H, Kawamura F. 2013. Multiple rRNA operons are essential for efficient cell growth and sporulation as well as outgrowth in Bacillus subtilis. Microbiology 159:2225-2236. http://dx.doi.org/10.1099/mic.0.067025-0.
-
(2013)
Microbiology
, vol.159
, pp. 2225-2236
-
-
Yano, K.1
Wada, T.2
Suzuki, S.3
Tagami, K.4
Matsumoto, T.5
Shiwa, Y.6
Ishige, T.7
Kawaguchi, Y.8
Masuda, K.9
Akanuma, G.10
Nanamiya, H.11
Niki, H.12
Yoshikawa, H.13
Kawamura, F.14
-
63
-
-
0035977093
-
High resolution structure of the large ribosomal subunit from a mesophilic eubacterium
-
Harms J, Schluenzen F, Zarivach R, Bashan A, Gat S, Agmon I, Bartels H, Franceschi F, Yonath A. 2001. High resolution structure of the large ribosomal subunit from a mesophilic eubacterium. Cell 107:679-688. http://dx.doi.org/10.1016/S0092-8674(01)00546-3.
-
(2001)
Cell
, vol.107
, pp. 679-688
-
-
Harms, J.1
Schluenzen, F.2
Zarivach, R.3
Bashan, A.4
Gat, S.5
Agmon, I.6
Bartels, H.7
Franceschi, F.8
Yonath, A.9
-
64
-
-
0017807310
-
Protein L16 induces a conformational change when incorporated into a L16-deficient core derived from Escherichia coli ribosomes
-
Teraoka H, Nierhaus KH. 1978. Protein L16 induces a conformational change when incorporated into a L16-deficient core derived from Escherichia coli ribosomes. FEBS Lett. 88:223-226. http://dx.doi.org/10.1016/0014-5793(78)80179-3.
-
(1978)
FEBS Lett.
, vol.88
, pp. 223-226
-
-
Teraoka, H.1
Nierhaus, K.H.2
-
65
-
-
0016829430
-
The importance of Escherichia coli ribosomal proteins L1, L11 and L16 for the association of ribosomal subunits and the formation of the 70-S initiation complex
-
Kazemie M. 1975. The importance of Escherichia coli ribosomal proteins L1, L11 and L16 for the association of ribosomal subunits and the formation of the 70-S initiation complex. Eur. J. Biochem. 58:501-510. http://dx.doi.org/10.1111/j.1432-1033.1975.tb02398.x.
-
(1975)
Eur. J. Biochem.
, vol.58
, pp. 501-510
-
-
Kazemie, M.1
-
66
-
-
77949326974
-
2+ dependence of 70 S ribosomal protein flexibility revealed by hydrogen/deuterium exchange and mass spectrometry
-
2+ dependence of 70 S ribosomal protein flexibility revealed by hydrogen/deuterium exchange and mass spectrometry. J. Biol. Chem. 285:5646-5652. http://dx.doi.org/10.1074/jbc.M109.081836.
-
(2010)
J. Biol. Chem.
, vol.285
, pp. 5646-5652
-
-
Yamamoto, T.1
Shimizu, Y.2
Ueda, T.3
Shiro, Y.4
-
67
-
-
39049182876
-
Deepening ribosomal insights
-
Liljas A. 2006. Deepening ribosomal insights. ACS Chem. Biol. 1:567-569. http://dx.doi.org/10.1021/cb600407u.
-
(2006)
ACS Chem. Biol.
, vol.1
, pp. 567-569
-
-
Liljas, A.1
-
68
-
-
0032967391
-
Conformational variability in Escherichia coli 70S ribosome as revealed by 3D cryo-electron microscopy
-
Agrawal RK, Lata RK, Frank J. 1999. Conformational variability in Escherichia coli 70S ribosome as revealed by 3D cryo-electron microscopy. Int. J. Biochem. Cell Biol. 31:243-254. http://dx.doi.org/10.1016/S1357-2725(98)00149-6.
-
(1999)
Int. J. Biochem. Cell Biol.
, vol.31
, pp. 243-254
-
-
Agrawal, R.K.1
Lata, R.K.2
Frank, J.3
-
69
-
-
42949126723
-
Coupling of ribosomal L1 stalk and tRNA dynamics during translation elongation
-
Fei J, Kosuri P, MacDougall DD, Gonzalez RL. 2008. Coupling of ribosomal L1 stalk and tRNA dynamics during translation elongation. Mol. Cell 30:348-359. http://dx.doi.org/10.1016/j.molcel.2008.03.012.
-
(2008)
Mol. Cell
, vol.30
, pp. 348-359
-
-
Fei, J.1
Kosuri, P.2
MacDougall, D.D.3
Gonzalez, R.L.4
-
70
-
-
27644491082
-
Structures of the bacterial ribosome at 3.5 A resolution
-
Schuwirth BS, Borovinskaya MA, Hau CW, Zhang W, Vila-Sanjurjo A, Holton JM, Cate JH. 2005. Structures of the bacterial ribosome at 3.5 A resolution. Science 310:827-834. http://dx.doi.org/10.1126/science.1117230.
-
(2005)
Science
, vol.310
, pp. 827-834
-
-
Schuwirth, B.S.1
Borovinskaya, M.A.2
Hau, C.W.3
Zhang, W.4
Vila-Sanjurjo, A.5
Holton, J.M.6
Cate, J.H.7
-
71
-
-
0033762347
-
Energetic contribution of tRNA hybrid state formation to translocation catalysis on the ribosome
-
Semenkov YP, Rodnina MV, Wintermeyer W. 2000. Energetic contribution of tRNA hybrid state formation to translocation catalysis on the ribosome. Nat. Struct. Biol. 7:1027-1031. http://dx.doi.org/10.1038/80938.
-
(2000)
Nat. Struct. Biol.
, vol.7
, pp. 1027-1031
-
-
Semenkov, Y.P.1
Rodnina, M.V.2
Wintermeyer, W.3
-
72
-
-
0014216968
-
The intracellular concentration of bound and unbound magnesium ions in Escherichia coli
-
Hurwitz C, Rosano CL. 1967. The intracellular concentration of bound and unbound magnesium ions in Escherichia coli. J. Biol. Chem. 242:3719-3722.
-
(1967)
J. Biol. Chem.
, vol.242
, pp. 3719-3722
-
-
Hurwitz, C.1
Rosano, C.L.2
-
73
-
-
24244466636
-
Effects of magnesium starvation on ribosome content of Escherichia coli
-
McCarthy BJ. 1962. Effects of magnesium starvation on ribosome content of Escherichia coli. Biochim. Biophys. Acta 55:880-888. http://dx.doi.org/10.1016/0006-3002(62)90901-0.
-
(1962)
Biochim. Biophys. Acta
, vol.55
, pp. 880-888
-
-
McCarthy, B.J.1
-
74
-
-
84894381974
-
Assessment of the requirements for magnesium transporters in Bacillus subtilis
-
Wakeman CA, Goodson JR, Zacharia VM, Winkler WC. 2014. Assessment of the requirements for magnesium transporters in Bacillus subtilis. J. Bacteriol. 196:1206-1214. http://dx.doi.org/10.1128/JB.01238-13.
-
(2014)
J. Bacteriol.
, vol.196
, pp. 1206-1214
-
-
Wakeman, C.A.1
Goodson, J.R.2
Zacharia, V.M.3
Winkler, W.C.4
|