메뉴 건너뛰기




Volumn 24, Issue , 2015, Pages 112-120

Next-generation sequencing and protein mass spectrometry for the comprehensive analysis of human cellular and serum antibody repertoires

Author keywords

[No Author keywords available]

Indexed keywords

AUTOANTIBODY; B LYMPHOCYTE ANTIBODY; B LYMPHOCYTE ANTIGEN; CELL ANTIBODY; IMMUNOGLOBULIN; VACCINE; VON HIPPEL LINDAU PROTEIN; ANTIBODY;

EID: 84911909440     PISSN: 13675931     EISSN: 18790402     Source Type: Journal    
DOI: 10.1016/j.cbpa.2014.11.007     Document Type: Review
Times cited : (74)

References (76)
  • 7
    • 84885969631 scopus 로고    scopus 로고
    • The application of next generation sequencing to the understanding of antibody repertoires
    • Mathonet P., Ullman C.G. The application of next generation sequencing to the understanding of antibody repertoires. Front Immunol 2013, 4:265.
    • (2013) Front Immunol , vol.4 , pp. 265
    • Mathonet, P.1    Ullman, C.G.2
  • 9
    • 84893776492 scopus 로고    scopus 로고
    • High-throughput sequencing of natively paired antibody chains provides evidence for original antigenic sin shaping the antibody response to influenza vaccination
    • Tan Y.C., Blum L.K., Kongpachith S., Ju C.H., Cai X., Lindstrom T.M., Sokolove J., Robinson W.H. High-throughput sequencing of natively paired antibody chains provides evidence for original antigenic sin shaping the antibody response to influenza vaccination. Clin Immunol 2014, 151:55-65.
    • (2014) Clin Immunol , vol.151 , pp. 55-65
    • Tan, Y.C.1    Blum, L.K.2    Kongpachith, S.3    Ju, C.H.4    Cai, X.5    Lindstrom, T.M.6    Sokolove, J.7    Robinson, W.H.8
  • 10
    • 84897031768 scopus 로고    scopus 로고
    • Identifying functional anti-Staphylococcus aureus antibodies by sequencing antibody repertoires of patient plasmablasts
    • Lu D.R., Tan Y.C., Kongpachith S., Cai X.Y., Stein E.A., Lindstrom T.M., Sokolove J., Robinson W.H. Identifying functional anti-Staphylococcus aureus antibodies by sequencing antibody repertoires of patient plasmablasts. Clin Immunol 2014, 152:77-89.
    • (2014) Clin Immunol , vol.152 , pp. 77-89
    • Lu, D.R.1    Tan, Y.C.2    Kongpachith, S.3    Cai, X.Y.4    Stein, E.A.5    Lindstrom, T.M.6    Sokolove, J.7    Robinson, W.H.8
  • 11
    • 0030006070 scopus 로고    scopus 로고
    • Clonal selection and learning in the antibody system
    • Rajewsky K. Clonal selection and learning in the antibody system. Nature 1996, 381:751-758.
    • (1996) Nature , vol.381 , pp. 751-758
    • Rajewsky, K.1
  • 12
    • 84883801440 scopus 로고    scopus 로고
    • Diversity among memory B cells: origin, consequences, and utility
    • Tarlinton D., Good-Jacobson K. Diversity among memory B cells: origin, consequences, and utility. Science 2013, 341:1205-1211.
    • (2013) Science , vol.341 , pp. 1205-1211
    • Tarlinton, D.1    Good-Jacobson, K.2
  • 13
    • 0030271822 scopus 로고    scopus 로고
    • Long-term humoral immunity against viruses: revisiting the issue of plasma cell longevity
    • Slifka M.K., Ahmed R. Long-term humoral immunity against viruses: revisiting the issue of plasma cell longevity. Trends Microbiol 1996, 4:394-400.
    • (1996) Trends Microbiol , vol.4 , pp. 394-400
    • Slifka, M.K.1    Ahmed, R.2
  • 14
    • 0016592136 scopus 로고
    • Characterization of B-cell repertoire specific for 2,4-dinitrophenyl and 2,4,6-trinitrophenyl determinants in neonatal balb-c mice
    • Klinman N.R., Press J.L. Characterization of B-cell repertoire specific for 2,4-dinitrophenyl and 2,4,6-trinitrophenyl determinants in neonatal balb-c mice. J Exp Med 1975, 141:1133-1146.
    • (1975) J Exp Med , vol.141 , pp. 1133-1146
    • Klinman, N.R.1    Press, J.L.2
  • 20
    • 84860494449 scopus 로고    scopus 로고
    • Antibody repertoires in humanized NOD-SCID-IL2R gamma(null) mice and human B cells reveals human-like diversification and tolerance checkpoints in the mouse
    • Ippolito G.C., Hoi K.H., Reddy S.T., Carroll S.M., Ge X., Rogosch T., Zemlin M., Shultz L.D., Ellington A.D., VanDenBerg C.L., et al. Antibody repertoires in humanized NOD-SCID-IL2R gamma(null) mice and human B cells reveals human-like diversification and tolerance checkpoints in the mouse. PLoS ONE 2012, 7:e35497.
    • (2012) PLoS ONE , vol.7 , pp. e35497
    • Ippolito, G.C.1    Hoi, K.H.2    Reddy, S.T.3    Carroll, S.M.4    Ge, X.5    Rogosch, T.6    Zemlin, M.7    Shultz, L.D.8    Ellington, A.D.9    VanDenBerg, C.L.10
  • 21
    • 84866177970 scopus 로고    scopus 로고
    • Shaping of human germline IgH repertoires revealed by deep sequencing
    • Larimore K., McCormick M.W., Robins H.S., Greenberg P.D. Shaping of human germline IgH repertoires revealed by deep sequencing. J Immunol 2012, 189:3221-3230.
    • (2012) J Immunol , vol.189 , pp. 3221-3230
    • Larimore, K.1    McCormick, M.W.2    Robins, H.S.3    Greenberg, P.D.4
  • 22
    • 84878073543 scopus 로고    scopus 로고
    • The restricted D-H gene reading frame usage in the expressed human antibody repertoire is selected based upon its amino acid content
    • Benichou J., Glanville J., Prak E.T.L., Azran R., Kuo T.C., Pons J., Desmarais C., Tsaban L., Louzoun Y. The restricted D-H gene reading frame usage in the expressed human antibody repertoire is selected based upon its amino acid content. J Immunol 2013, 190:5567-5577.
    • (2013) J Immunol , vol.190 , pp. 5567-5577
    • Benichou, J.1    Glanville, J.2    Prak, E.T.L.3    Azran, R.4    Kuo, T.C.5    Pons, J.6    Desmarais, C.7    Tsaban, L.8    Louzoun, Y.9
  • 24
    • 84911893007 scopus 로고    scopus 로고
    • Clonal progression during the T cell-dependent B cell antibody response depends on the immunoglobulin DH gene segment repertoire
    • Trad A., Tanasa R.I., Lange H., Zemlin M., Schroeder H.W., Lemke H. Clonal progression during the T cell-dependent B cell antibody response depends on the immunoglobulin DH gene segment repertoire. Front Immunol 2014, 5:385.
    • (2014) Front Immunol , vol.5 , pp. 385
    • Trad, A.1    Tanasa, R.I.2    Lange, H.3    Zemlin, M.4    Schroeder, H.W.5    Lemke, H.6
  • 25
    • 84855512128 scopus 로고    scopus 로고
    • Memory B cells, but not long-lived plasma cells, possess antigen specificities for viral escape mutants
    • Purtha W.E., Tedder T.F., Johnson S., Bhattacharya D., Diamond M.S. Memory B cells, but not long-lived plasma cells, possess antigen specificities for viral escape mutants. J Exp Med 2011, 208:2599-2606.
    • (2011) J Exp Med , vol.208 , pp. 2599-2606
    • Purtha, W.E.1    Tedder, T.F.2    Johnson, S.3    Bhattacharya, D.4    Diamond, M.S.5
  • 26
    • 0029653368 scopus 로고
    • Kinetic and affinity limits on antibodies produced during immune-responses
    • Foote J., Eisen H.N. Kinetic and affinity limits on antibodies produced during immune-responses. Proc Natl Acad Sci U S A 1995, 92:1254-1256.
    • (1995) Proc Natl Acad Sci U S A , vol.92 , pp. 1254-1256
    • Foote, J.1    Eisen, H.N.2
  • 27
    • 0023216961 scopus 로고
    • The E-T (elephant-tadpole) paradox necessitates the concept of a unit of B-cell function-the protecton
    • Langman R.E., Cohn M. The E-T (elephant-tadpole) paradox necessitates the concept of a unit of B-cell function-the protecton. Mol Immunol 1987, 24:675-697.
    • (1987) Mol Immunol , vol.24 , pp. 675-697
    • Langman, R.E.1    Cohn, M.2
  • 28
    • 47549116006 scopus 로고    scopus 로고
    • Correlates of vaccine-induced immunity
    • Plotkin S.A. Correlates of vaccine-induced immunity. Clin Infect Dis 2008, 47:401-409.
    • (2008) Clin Infect Dis , vol.47 , pp. 401-409
    • Plotkin, S.A.1
  • 31
    • 84874095196 scopus 로고    scopus 로고
    • Age-related changes in human peripheral blood IgH repertoire following vaccination
    • Wu Y.C., Kipling D., Dunn-Walters D.K. Age-related changes in human peripheral blood IgH repertoire following vaccination. Front Immunol 2012, 3:193.
    • (2012) Front Immunol , vol.3 , pp. 193
    • Wu, Y.C.1    Kipling, D.2    Dunn-Walters, D.K.3
  • 32
    • 81155152466 scopus 로고    scopus 로고
    • Vaccination-induced changes in human B-cell repertoire and pneumococcal IgM and IgA antibody at different ages
    • Ademokun A., Wu Y.-C., Martin V., Mitra R., Sack U., Baxendale H., Kipling D., Dunn-Walters D.K. Vaccination-induced changes in human B-cell repertoire and pneumococcal IgM and IgA antibody at different ages. Aging Cell 2011, 10:922-930.
    • (2011) Aging Cell , vol.10 , pp. 922-930
    • Ademokun, A.1    Wu, Y.-C.2    Martin, V.3    Mitra, R.4    Sack, U.5    Baxendale, H.6    Kipling, D.7    Dunn-Walters, D.K.8
  • 34
    • 50149099346 scopus 로고    scopus 로고
    • Acquired hematopoietic stem cell defects determine B-cell repertoire changes associated with aging
    • Guerrettaz L.M., Johnson S.A., Cambier J.C. Acquired hematopoietic stem cell defects determine B-cell repertoire changes associated with aging. Proc Natl Acad Sci U S A 2008, 105:11898-11902.
    • (2008) Proc Natl Acad Sci U S A , vol.105 , pp. 11898-11902
    • Guerrettaz, L.M.1    Johnson, S.A.2    Cambier, J.C.3
  • 36
    • 78049361811 scopus 로고    scopus 로고
    • Secondary immunization generates clonally related antigen-specific plasma cells and memory B cells
    • Frolich D., Giesecke C., Mei H.E., Reiter K., Daridon C., Lipsky P.E., Dorner T. Secondary immunization generates clonally related antigen-specific plasma cells and memory B cells. J Immunol 2010, 185:3103-3110.
    • (2010) J Immunol , vol.185 , pp. 3103-3110
    • Frolich, D.1    Giesecke, C.2    Mei, H.E.3    Reiter, K.4    Daridon, C.5    Lipsky, P.E.6    Dorner, T.7
  • 40
    • 84906690132 scopus 로고    scopus 로고
    • Systems vaccinology: probing humanity's diverse immune systems with vaccines
    • Pulendran B. Systems vaccinology: probing humanity's diverse immune systems with vaccines. Proc Natl Acad Sci U S A 2014, 111:12300-12306.
    • (2014) Proc Natl Acad Sci U S A , vol.111 , pp. 12300-12306
    • Pulendran, B.1
  • 42
    • 84874182011 scopus 로고    scopus 로고
    • Origin and function of circulating plasmablasts during acute viral infections
    • Fink K. Origin and function of circulating plasmablasts during acute viral infections. Front Immunol 2012, 3:78.
    • (2012) Front Immunol , vol.3 , pp. 78
    • Fink, K.1
  • 44
    • 79960546363 scopus 로고    scopus 로고
    • Ex vivo characterization and isolation of rare memory B cells with antigen tetramers
    • Franz B., May K.F., Dranoff G., Wucherpfennig K. Ex vivo characterization and isolation of rare memory B cells with antigen tetramers. Blood 2011, 118:348-357.
    • (2011) Blood , vol.118 , pp. 348-357
    • Franz, B.1    May, K.F.2    Dranoff, G.3    Wucherpfennig, K.4
  • 46
    • 84909586866 scopus 로고    scopus 로고
    • Chemical tools to monitor and manipulate the adaptive immune system
    • Kodadek T. Chemical tools to monitor and manipulate the adaptive immune system. Chem Biol 2014, 21:1066-1074.
    • (2014) Chem Biol , vol.21 , pp. 1066-1074
    • Kodadek, T.1
  • 48
    • 84866495323 scopus 로고    scopus 로고
    • Human antibodies that neutralize HIV-1: identification, structures, and B cell ontogenies
    • Kwong P.D., Mascola J.R. Human antibodies that neutralize HIV-1: identification, structures, and B cell ontogenies. Immunity 2012, 37:412-425.
    • (2012) Immunity , vol.37 , pp. 412-425
    • Kwong, P.D.1    Mascola, J.R.2
  • 49
    • 84875551472 scopus 로고    scopus 로고
    • Broadly neutralizing antiviral antibodies
    • Corti D., Lanzavecchia A. Broadly neutralizing antiviral antibodies. Annu Rev Immunol 2013, 31:705-742.
    • (2013) Annu Rev Immunol , vol.31 , pp. 705-742
    • Corti, D.1    Lanzavecchia, A.2
  • 51
  • 54
    • 84876272159 scopus 로고    scopus 로고
    • Mining the antibodyome for HIV-1-neutralizing antibodies with next-generation sequencing and phylogenetic pairing of heavy/light chains
    • Zhu J., Ofek G., Yang Y.P., Zhang B.S., Louder M.K., Lu G., McKee K., Pancera M., Skinner J., Zhang Z.H., et al. Mining the antibodyome for HIV-1-neutralizing antibodies with next-generation sequencing and phylogenetic pairing of heavy/light chains. Proc Natl Acad Sci U S A 2013, 110:6470-6475.
    • (2013) Proc Natl Acad Sci U S A , vol.110 , pp. 6470-6475
    • Zhu, J.1    Ofek, G.2    Yang, Y.P.3    Zhang, B.S.4    Louder, M.K.5    Lu, G.6    McKee, K.7    Pancera, M.8    Skinner, J.9    Zhang, Z.H.10
  • 60
    • 80155173180 scopus 로고    scopus 로고
    • Molecular signature of a public clonotypic autoantibody in primary Sjogren's syndrome: a forbidden clone in systemic autoimmunity
    • Lindop R., Arentz G., Chataway T.K., Thurgood L.A., Jackson M.W., Reed J.H., McCluskey J., Gordon T.P. Molecular signature of a public clonotypic autoantibody in primary Sjogren's syndrome: a forbidden clone in systemic autoimmunity. Arthritis Rheum 2011, 63:3477-3486.
    • (2011) Arthritis Rheum , vol.63 , pp. 3477-3486
    • Lindop, R.1    Arentz, G.2    Chataway, T.K.3    Thurgood, L.A.4    Jackson, M.W.5    Reed, J.H.6    McCluskey, J.7    Gordon, T.P.8
  • 61
    • 84869887947 scopus 로고    scopus 로고
    • Secreted human Ro52 autoantibody proteomes express a restricted set of public clonotypes
    • Arentz G., Thurgood L.A., Lindop R., Chataway T.K., Gordon T.P. Secreted human Ro52 autoantibody proteomes express a restricted set of public clonotypes. J Autoimmun 2012, 39:466-470.
    • (2012) J Autoimmun , vol.39 , pp. 466-470
    • Arentz, G.1    Thurgood, L.A.2    Lindop, R.3    Chataway, T.K.4    Gordon, T.P.5
  • 62
    • 84864089353 scopus 로고    scopus 로고
    • Assessment of the humoral immune response to cancer
    • Murphy M.A., O'Leary J.J., Cahill D.J. Assessment of the humoral immune response to cancer. J Proteomics 2012, 75:4573-4579.
    • (2012) J Proteomics , vol.75 , pp. 4573-4579
    • Murphy, M.A.1    O'Leary, J.J.2    Cahill, D.J.3
  • 65
  • 66
    • 84869826772 scopus 로고    scopus 로고
    • Massive evolution of the immunoglobulin heavy chain locus in children with B precursor acute lymphoblastic leukemia
    • Gawad C., Pepin F., Carlton V.E., Klinger M., Logan A.C., Miklos D.B., Faham M., Dahl G., Lacayo N. Massive evolution of the immunoglobulin heavy chain locus in children with B precursor acute lymphoblastic leukemia. Blood 2012, 120:4407-4417.
    • (2012) Blood , vol.120 , pp. 4407-4417
    • Gawad, C.1    Pepin, F.2    Carlton, V.E.3    Klinger, M.4    Logan, A.C.5    Miklos, D.B.6    Faham, M.7    Dahl, G.8    Lacayo, N.9
  • 67
    • 84862961025 scopus 로고    scopus 로고
    • High-throughput VDJ sequencing for quantification of minimal residual disease in chronic lymphocytic leukemia and immune reconstitution assessment
    • Logan A.C., Gao H., Wang C., Sahaf B., Jones C.D., Marshall E.L., Buno I., Armstrong R., Fire A.Z., Weinberg K.I., et al. High-throughput VDJ sequencing for quantification of minimal residual disease in chronic lymphocytic leukemia and immune reconstitution assessment. Proc Natl Acad Sci U S A 2011, 108:21194-21199.
    • (2011) Proc Natl Acad Sci U S A , vol.108 , pp. 21194-21199
    • Logan, A.C.1    Gao, H.2    Wang, C.3    Sahaf, B.4    Jones, C.D.5    Marshall, E.L.6    Buno, I.7    Armstrong, R.8    Fire, A.Z.9    Weinberg, K.I.10
  • 69
    • 84867163438 scopus 로고    scopus 로고
    • Comprehensive assessment of potential multiple myeloma immunoglobulin heavy chain V-D-J intraclonal variation using massively parallel pyrosequencing
    • Tschumper R.C., Asmann Y.W., Hossain A., Huddleston P.M., Wu X., Dispenzieri A., Eckloff B.W., Jelinek D.F. Comprehensive assessment of potential multiple myeloma immunoglobulin heavy chain V-D-J intraclonal variation using massively parallel pyrosequencing. Oncotarget 2012, 3:502-513.
    • (2012) Oncotarget , vol.3 , pp. 502-513
    • Tschumper, R.C.1    Asmann, Y.W.2    Hossain, A.3    Huddleston, P.M.4    Wu, X.5    Dispenzieri, A.6    Eckloff, B.W.7    Jelinek, D.F.8
  • 71
    • 84903527532 scopus 로고    scopus 로고
    • Studying the antibody repertoire after vaccination: practical applications
    • Galson J.D., Pollard A.J., Truck J., Kelly D.F. Studying the antibody repertoire after vaccination: practical applications. Trends Immunol 2014, 35:319-331.
    • (2014) Trends Immunol , vol.35 , pp. 319-331
    • Galson, J.D.1    Pollard, A.J.2    Truck, J.3    Kelly, D.F.4
  • 72
    • 84916207039 scopus 로고    scopus 로고
    • Characterizing immune repertoires by high throughput sequencing: strategies and applications
    • (Epub ahead of print)
    • Calis J.J., Rosenberg B.R. Characterizing immune repertoires by high throughput sequencing: strategies and applications. Trends Immunol 2014, (Epub ahead of print).
    • (2014) Trends Immunol
    • Calis, J.J.1    Rosenberg, B.R.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.