-
1
-
-
0032871834
-
Finding families for genomic ORFans
-
Fischer D., Eisenberg D. Finding families for genomic ORFans. Bioinformatics 1999, 15:759-762.
-
(1999)
Bioinformatics
, vol.15
, pp. 759-762
-
-
Fischer, D.1
Eisenberg, D.2
-
2
-
-
0029897603
-
Bioinformatics and the discovery of gene function
-
Casari G., et al. Bioinformatics and the discovery of gene function. Trends Genet. 1996, 12:244-245.
-
(1996)
Trends Genet.
, vol.12
, pp. 244-245
-
-
Casari, G.1
-
3
-
-
69449089723
-
More than just orphans: are taxonomically-restricted genes important in evolution?
-
Khalturin K., et al. More than just orphans: are taxonomically-restricted genes important in evolution?. Trends Genet. 2009, 25:404-413.
-
(2009)
Trends Genet.
, vol.25
, pp. 404-413
-
-
Khalturin, K.1
-
4
-
-
33747262040
-
What makes species unique? The contribution of proteins with obscure features
-
Gollery M., et al. What makes species unique? The contribution of proteins with obscure features. Genome Biol. 2006, 7:R57.
-
(2006)
Genome Biol.
, vol.7
, pp. R57
-
-
Gollery, M.1
-
5
-
-
22144491675
-
Orphans as taxonomically restricted and ecologically important genes
-
Wilson G.A., et al. Orphans as taxonomically restricted and ecologically important genes. Microbiology 2005, 151:2499-2501.
-
(2005)
Microbiology
, vol.151
, pp. 2499-2501
-
-
Wilson, G.A.1
-
6
-
-
39449104220
-
Identification and investigation of ORFans in the viral world
-
Yin Y., Fischer D. Identification and investigation of ORFans in the viral world. BMC Genomics 2008, 9:24.
-
(2008)
BMC Genomics
, vol.9
, pp. 24
-
-
Yin, Y.1
Fischer, D.2
-
7
-
-
80052969570
-
The evolutionary origin of orphan genes
-
Tautz D., Domazet-Lošo T. The evolutionary origin of orphan genes. Nat. Rev. Genet. 2011, 12:692-702.
-
(2011)
Nat. Rev. Genet.
, vol.12
, pp. 692-702
-
-
Tautz, D.1
Domazet-Lošo, T.2
-
8
-
-
84896504155
-
The life cycle of Drosophila orphan genes
-
Palmieri N., et al. The life cycle of Drosophila orphan genes. eLife 2014, 3:e01311.
-
(2014)
eLife
, vol.3
, pp. e01311
-
-
Palmieri, N.1
-
9
-
-
79951566081
-
Evolutionary origins of Brassicaceae specific genes in Arabidopsis thaliana
-
Donoghue M.T., et al. Evolutionary origins of Brassicaceae specific genes in Arabidopsis thaliana. BMC Evol. Biol. 2011, 11:47.
-
(2011)
BMC Evol. Biol.
, vol.11
, pp. 47
-
-
Donoghue, M.T.1
-
10
-
-
84876523559
-
Mechanisms and dynamics of orphan gene emergence in insect genomes
-
Wissler L., et al. Mechanisms and dynamics of orphan gene emergence in insect genomes. Genome Biol. Evol. 2013, 5:439-455.
-
(2013)
Genome Biol. Evol.
, vol.5
, pp. 439-455
-
-
Wissler, L.1
-
11
-
-
84874013460
-
Phylogenetic patterns of emergence of new genes support a model of frequent de novo evolution
-
Neme R., Tautz D. Phylogenetic patterns of emergence of new genes support a model of frequent de novo evolution. BMC Genomics 2013, 14:117.
-
(2013)
BMC Genomics
, vol.14
, pp. 117
-
-
Neme, R.1
Tautz, D.2
-
12
-
-
79955555530
-
Shotgun proteomics aids discovery of novel protein-coding genes, alternative splicing, and 'resurrected' pseudogenes in the mouse genome
-
Brosch M., et al. Shotgun proteomics aids discovery of novel protein-coding genes, alternative splicing, and 'resurrected' pseudogenes in the mouse genome. Genome Res. 2011, 21:756-767.
-
(2011)
Genome Res.
, vol.21
, pp. 756-767
-
-
Brosch, M.1
-
13
-
-
0017771466
-
Evolution and tinkering
-
Jacob F. Evolution and tinkering. Science 1977, 196:1161-1166.
-
(1977)
Science
, vol.196
, pp. 1161-1166
-
-
Jacob, F.1
-
14
-
-
33745585334
-
Novel genes derived from noncoding DNA in Drosophila melanogaster are frequently X-linked and exhibit testis-biased expression
-
Levine M.T., et al. Novel genes derived from noncoding DNA in Drosophila melanogaster are frequently X-linked and exhibit testis-biased expression. Proc. Natl. Acad. Sci. U.S.A. 2006, 103:9935-9939.
-
(2006)
Proc. Natl. Acad. Sci. U.S.A.
, vol.103
, pp. 9935-9939
-
-
Levine, M.T.1
-
15
-
-
34250748633
-
Evidence for de novo evolution of testis-expressed genes in the Drosophila yakuba/Drosophila erecta clade
-
Begun D.J., et al. Evidence for de novo evolution of testis-expressed genes in the Drosophila yakuba/Drosophila erecta clade. Genetics 2006, 176:1131-1137.
-
(2006)
Genetics
, vol.176
, pp. 1131-1137
-
-
Begun, D.J.1
-
16
-
-
50649090652
-
De novo origination of a new protein-coding gene in Saccharomyces cerevisiae
-
Cai J., et al. De novo origination of a new protein-coding gene in Saccharomyces cerevisiae. Genetics 2008, 179:487-496.
-
(2008)
Genetics
, vol.179
, pp. 487-496
-
-
Cai, J.1
-
17
-
-
77950521826
-
A de novo originated gene depresses budding yeast mating pathway and is repressed by the protein encoded by its antisense strand
-
Li D., et al. A de novo originated gene depresses budding yeast mating pathway and is repressed by the protein encoded by its antisense strand. Cell Res. 2010, 20:408-420.
-
(2010)
Cell Res.
, vol.20
, pp. 408-420
-
-
Li, D.1
-
18
-
-
77950801106
-
A human-specific de novo protein-coding gene associated with human brain functions
-
Li C-Y., et al. A human-specific de novo protein-coding gene associated with human brain functions. PLoS Comput. Biol. 2010, 6:e1000734.
-
(2010)
PLoS Comput. Biol.
, vol.6
, pp. e1000734
-
-
Li, C.-Y.1
-
19
-
-
70349645640
-
Recent de novo origin of human protein-coding genes
-
Knowles D.G., McLysaght A. Recent de novo origin of human protein-coding genes. Genome Res. 2009, 19:1752-1759.
-
(2009)
Genome Res.
, vol.19
, pp. 1752-1759
-
-
Knowles, D.G.1
McLysaght, A.2
-
20
-
-
70349270547
-
Emergence of a new gene from an intergenic region
-
Heinen T.J.A.J., et al. Emergence of a new gene from an intergenic region. Curr. Biol. 2009, 19:1527-1531.
-
(2009)
Curr. Biol.
, vol.19
, pp. 1527-1531
-
-
Heinen, T.J.A.J.1
-
21
-
-
84869851252
-
De novo origin of protein-coding genes in murine rodents
-
Murphy D.N., McLysaght A. De novo origin of protein-coding genes in murine rodents. PLoS ONE 2012, 7:e48650.
-
(2012)
PLoS ONE
, vol.7
, pp. e48650
-
-
Murphy, D.N.1
McLysaght, A.2
-
22
-
-
79951580190
-
De novo origin of new genes with introns in Plasmodium vivax
-
Yang Z., Huang J. De novo origin of new genes with introns in Plasmodium vivax. FEBS Lett. 2011, 585:641-644.
-
(2011)
FEBS Lett.
, vol.585
, pp. 641-644
-
-
Yang, Z.1
Huang, J.2
-
23
-
-
84893906285
-
Origin and spread of de novo genes in Drosophila melanogaster populations
-
Zhao L., et al. Origin and spread of de novo genes in Drosophila melanogaster populations. Science 2014, 343:769-772.
-
(2014)
Science
, vol.343
, pp. 769-772
-
-
Zhao, L.1
-
24
-
-
84863988094
-
Proto-genes and de novo gene birth
-
Anne-Ruxandra Carvunis, et al. Proto-genes and de novo gene birth. Nature 2012, 487:370-374.
-
(2012)
Nature
, vol.487
, pp. 370-374
-
-
Anne-Ruxandra, C.1
-
25
-
-
77449140452
-
Identifying and quantifying orphan protein sequences in fungi
-
Ekman D., Elofsson A. Identifying and quantifying orphan protein sequences in fungi. J. Mol. Biol. 2010, 396:396-405.
-
(2010)
J. Mol. Biol.
, vol.396
, pp. 396-405
-
-
Ekman, D.1
Elofsson, A.2
-
26
-
-
84874484607
-
Evolutionary analyses of non-family genes in plants
-
Ye C-Y., et al. Evolutionary analyses of non-family genes in plants. Plant J. 2013, 73:788-797.
-
(2013)
Plant J.
, vol.73
, pp. 788-797
-
-
Ye, C.-Y.1
-
27
-
-
36849012677
-
Significant comparative characteristics between orphan and nonorphan genes in the rice (Oryza sativa L.) genome
-
Guo W-J., et al. Significant comparative characteristics between orphan and nonorphan genes in the rice (Oryza sativa L.) genome. Comp. Funct. Genomics 2007, 2007:1-7.
-
(2007)
Comp. Funct. Genomics
, vol.2007
, pp. 1-7
-
-
Guo, W.-J.1
-
28
-
-
84873041082
-
Genome-wide identification, characterization, and expression analysis of lineage-specific genes within zebrafish
-
Yang L., et al. Genome-wide identification, characterization, and expression analysis of lineage-specific genes within zebrafish. BMC Genomics 2013, 14:65.
-
(2013)
BMC Genomics
, vol.14
, pp. 65
-
-
Yang, L.1
-
29
-
-
36048950933
-
Gene family evolution across 12 Drosophila genomes
-
Hahn M.W., et al. Gene family evolution across 12 Drosophila genomes. PLoS Genet. 2007, 3:e197.
-
(2007)
PLoS Genet.
, vol.3
, pp. e197
-
-
Hahn, M.W.1
-
30
-
-
79551632781
-
The ecoresponsive genome of Daphnia pulex
-
Colbourne J.K., et al. The ecoresponsive genome of Daphnia pulex. Science 2011, 331:555-561.
-
(2011)
Science
, vol.331
, pp. 555-561
-
-
Colbourne, J.K.1
-
31
-
-
84868159385
-
Diverse lifestyles and strategies of plant pathogenesis encoded in the genomes of eighteen Dothideomycetes fungi
-
Ohm R.A., et al. Diverse lifestyles and strategies of plant pathogenesis encoded in the genomes of eighteen Dothideomycetes fungi. PLoS Pathog. 2012, 8:e1003037.
-
(2012)
PLoS Pathog.
, vol.8
, pp. e1003037
-
-
Ohm, R.A.1
-
32
-
-
84874262560
-
Why so many unknown genes? Partitioning orphans from a representative transcriptome of the lone star tick Amblyomma americanum
-
Gibson A.K., et al. Why so many unknown genes? Partitioning orphans from a representative transcriptome of the lone star tick Amblyomma americanum. BMC Genomics 2013, 14:135.
-
(2013)
BMC Genomics
, vol.14
, pp. 135
-
-
Gibson, A.K.1
-
33
-
-
42549143433
-
Consistent and contrasting properties of lineage-specific genes in the apicomplexan parasites Plasmodium and Theileria
-
Kuo C-H., Kissinger J.C. Consistent and contrasting properties of lineage-specific genes in the apicomplexan parasites Plasmodium and Theileria. BMC Evol. Biol. 2008, 8:108.
-
(2008)
BMC Evol. Biol.
, vol.8
, pp. 108
-
-
Kuo, C.-H.1
Kissinger, J.C.2
-
34
-
-
77649223105
-
Comparative analyses reveal distinct sets of lineage-specific genes within Arabidopsis thaliana
-
Lin H., et al. Comparative analyses reveal distinct sets of lineage-specific genes within Arabidopsis thaliana. BMC Evol. Biol. 2010, 10:41.
-
(2010)
BMC Evol. Biol.
, vol.10
, pp. 41
-
-
Lin, H.1
-
35
-
-
84874935725
-
Gene family evolution in green plants with emphasis on the origination and evolution of Arabidopsis thaliana genes
-
Guo Y-L. Gene family evolution in green plants with emphasis on the origination and evolution of Arabidopsis thaliana genes. Plant J. 2013, 73:941-951.
-
(2013)
Plant J.
, vol.73
, pp. 941-951
-
-
Guo, Y.-L.1
-
36
-
-
35748936426
-
A phylostratigraphy approach to uncover the genomic history of major adaptations in metazoan lineages
-
Domazet-Lošo T., et al. A phylostratigraphy approach to uncover the genomic history of major adaptations in metazoan lineages. Trends Genet. 2007, 23:533-539.
-
(2007)
Trends Genet.
, vol.23
, pp. 533-539
-
-
Domazet-Lošo, T.1
-
37
-
-
34247488321
-
On homology searches by protein BLAST and the characterization of the age of genes
-
Albà M.M., Castresana J. On homology searches by protein BLAST and the characterization of the age of genes. BMC Evol. Biol. 2007, 7:53.
-
(2007)
BMC Evol. Biol.
, vol.7
, pp. 53
-
-
Albà, M.M.1
Castresana, J.2
-
38
-
-
84890891375
-
Powerful sequence similarity search methods and in-depth manual analyses can identify remote homologs in many apparently 'orphan' viral proteins
-
Kuchibhatla D.B., et al. Powerful sequence similarity search methods and in-depth manual analyses can identify remote homologs in many apparently 'orphan' viral proteins. J. Virol. 2013, 88:10-20.
-
(2013)
J. Virol.
, vol.88
, pp. 10-20
-
-
Kuchibhatla, D.B.1
-
39
-
-
77952449083
-
Phylostratigraphic tracking of cancer genes suggests a link to the emergence of multicellularity in metazoa
-
Domazet-Lošo T., Tautz D. Phylostratigraphic tracking of cancer genes suggests a link to the emergence of multicellularity in metazoa. BMC Biol. 2010, 8:66.
-
(2010)
BMC Biol.
, vol.8
, pp. 66
-
-
Domazet-Lošo, T.1
Tautz, D.2
-
40
-
-
84876974547
-
Phylostratigraphic profiles reveal a deep evolutionary history of the vertebrate head sensory systems
-
Šestak M.S., et al. Phylostratigraphic profiles reveal a deep evolutionary history of the vertebrate head sensory systems. Front. Zool. 2013, 10:18.
-
(2013)
Front. Zool.
, vol.10
, pp. 18
-
-
Šestak, M.S.1
-
41
-
-
84886294241
-
How old is my gene?
-
Capra J.A., et al. How old is my gene?. Trends Genet. 2013, 29:659-668.
-
(2013)
Trends Genet.
, vol.29
, pp. 659-668
-
-
Capra, J.A.1
-
42
-
-
60149097110
-
Origin of primate orphan genes: a comparative genomics approach
-
Toll-Riera M., et al. Origin of primate orphan genes: a comparative genomics approach. Mol. Biol. Evol. 2009, 26:603-612.
-
(2009)
Mol. Biol. Evol.
, vol.26
, pp. 603-612
-
-
Toll-Riera, M.1
-
43
-
-
37249010122
-
Identification and characterization of lineage-specific genes within the Poaceae
-
Campbell M.A., et al. Identification and characterization of lineage-specific genes within the Poaceae. Plant Physiol. 2007, 145:1311-1322.
-
(2007)
Plant Physiol.
, vol.145
, pp. 1311-1322
-
-
Campbell, M.A.1
-
44
-
-
77951954143
-
Composition bias and the origin of ORFan genes
-
Yomtovian I., et al. Composition bias and the origin of ORFan genes. Bioinformatics 2010, 26:996-999.
-
(2010)
Bioinformatics
, vol.26
, pp. 996-999
-
-
Yomtovian, I.1
-
45
-
-
0023650543
-
The codon adaptation index - a measure of directional synonymous codon usage bias, and its potential applications
-
Sharp P.M., Li W-H. The codon adaptation index - a measure of directional synonymous codon usage bias, and its potential applications. Nucleic Acids Res. 1987, 15:1281-1295.
-
(1987)
Nucleic Acids Res.
, vol.15
, pp. 1281-1295
-
-
Sharp, P.M.1
Li, W.-H.2
-
46
-
-
84889013725
-
Integration of new genes into cellular networks, and their structural maturation
-
Abrusan G. Integration of new genes into cellular networks, and their structural maturation. Genetics 2013, 195:1407-1417.
-
(2013)
Genetics
, vol.195
, pp. 1407-1417
-
-
Abrusan, G.1
-
47
-
-
48149108245
-
Protein aggregation in the brain: the molecular basis for Alzheimer's and Parkinson's diseases
-
Irvine G.B., et al. Protein aggregation in the brain: the molecular basis for Alzheimer's and Parkinson's diseases. Mol. Med. 2008, 14:451.
-
(2008)
Mol. Med.
, vol.14
, pp. 451
-
-
Irvine, G.B.1
-
48
-
-
84857224836
-
Role of low-complexity sequences in the formation of novel protein coding sequences
-
Toll-Riera M., et al. Role of low-complexity sequences in the formation of novel protein coding sequences. Mol. Biol. Evol. 2011, 29:883-886.
-
(2011)
Mol. Biol. Evol.
, vol.29
, pp. 883-886
-
-
Toll-Riera, M.1
-
49
-
-
84871231239
-
Dissecting the role of low-complexity regions in the evolution of vertebrate proteins
-
Radó-Trilla N., Albà M. Dissecting the role of low-complexity regions in the evolution of vertebrate proteins. BMC Evol. Biol. 2012, 12:155.
-
(2012)
BMC Evol. Biol.
, vol.12
, pp. 155
-
-
Radó-Trilla, N.1
Albà, M.2
-
50
-
-
0030970280
-
Evolution of antifreeze glycoprotein gene from a trypsinogen gene in Antarctic notothenioid fish
-
Chen L., et al. Evolution of antifreeze glycoprotein gene from a trypsinogen gene in Antarctic notothenioid fish. Proc. Natl. Acad. Sci. U.S.A. 1997, 94:3811-3816.
-
(1997)
Proc. Natl. Acad. Sci. U.S.A.
, vol.94
, pp. 3811-3816
-
-
Chen, L.1
-
51
-
-
44949206468
-
Protein robustness promotes evolutionary innovations on large evolutionary time-scales
-
Ferrada E., Wagner A. Protein robustness promotes evolutionary innovations on large evolutionary time-scales. Proc. R. Soc. B: Biol. Sci. 2008, 275:1595-1602.
-
(2008)
Proc. R. Soc. B: Biol. Sci.
, vol.275
, pp. 1595-1602
-
-
Ferrada, E.1
Wagner, A.2
-
52
-
-
78650509490
-
Novel genes exhibit distinct patterns of function acquisition and network integration
-
Capra J.A., et al. Novel genes exhibit distinct patterns of function acquisition and network integration. Genome Biol. 2010, 11:R127.
-
(2010)
Genome Biol.
, vol.11
, pp. R127
-
-
Capra, J.A.1
-
53
-
-
70350515004
-
Unexpected consequences of a sudden and massive transposon amplification on rice gene expression
-
Naito K., et al. Unexpected consequences of a sudden and massive transposon amplification on rice gene expression. Nature 2009, 461:1130-1134.
-
(2009)
Nature
, vol.461
, pp. 1130-1134
-
-
Naito, K.1
-
54
-
-
84871329875
-
How important are transposons for plant evolution?
-
Lisch D. How important are transposons for plant evolution?. Nat. Rev. Genet. 2012, 14:49-61.
-
(2012)
Nat. Rev. Genet.
, vol.14
, pp. 49-61
-
-
Lisch, D.1
-
55
-
-
2442537233
-
Gene regulatory network growth by duplication
-
Teichmann S.A., Babu M.M. Gene regulatory network growth by duplication. Nat. Genet. 2004, 36:492-496.
-
(2004)
Nat. Genet.
, vol.36
, pp. 492-496
-
-
Teichmann, S.A.1
Babu, M.M.2
-
56
-
-
84871367915
-
Evolution of cis-regulatory elements in yeast de novo and duplicated new genes
-
Tsai Z.T-Y., et al. Evolution of cis-regulatory elements in yeast de novo and duplicated new genes. BMC Genomics 2012, 13:717.
-
(2012)
BMC Genomics
, vol.13
, pp. 717
-
-
Tsai, Z.T.-Y.1
-
57
-
-
84876875629
-
Extensive natural epigenetic variation at a de novo originated gene
-
Silveira A.B., et al. Extensive natural epigenetic variation at a de novo originated gene. PLoS Genet. 2013, 9:e1003437.
-
(2013)
PLoS Genet.
, vol.9
, pp. e1003437
-
-
Silveira, A.B.1
-
58
-
-
84887301772
-
De novo ORFs in Drosophila are Important to organismal fitness and evolved rapidly from previously non-coding sequences
-
Reinhardt J.A., et al. De novo ORFs in Drosophila are Important to organismal fitness and evolved rapidly from previously non-coding sequences. PLoS Genet. 2013, 9:e1003860.
-
(2013)
PLoS Genet.
, vol.9
, pp. e1003860
-
-
Reinhardt, J.A.1
-
59
-
-
78650385315
-
New genes in Drosophila quickly become essential
-
Chen S., et al. New genes in Drosophila quickly become essential. Science 2010, 330:1682-1685.
-
(2010)
Science
, vol.330
, pp. 1682-1685
-
-
Chen, S.1
-
60
-
-
84863602540
-
Younger genes are less likely to be essential than older genes, and duplicates are less likely to be essential than singletons of the same age
-
Chen W-H., et al. Younger genes are less likely to be essential than older genes, and duplicates are less likely to be essential than singletons of the same age. Mol. Biol. Evol. 2012, 29:1703-1706.
-
(2012)
Mol. Biol. Evol.
, vol.29
, pp. 1703-1706
-
-
Chen, W.-H.1
-
61
-
-
84879137062
-
Linking genes of unknown function with abiotic stress responses by high-throughput phenotype screening
-
Luhua S., et al. Linking genes of unknown function with abiotic stress responses by high-throughput phenotype screening. Physiol. Plant. 2013, 148:322-333.
-
(2013)
Physiol. Plant.
, vol.148
, pp. 322-333
-
-
Luhua, S.1
-
62
-
-
79957438702
-
Rapid evolution of coral proteins responsible for interaction with the environment
-
Voolstra C.R., et al. Rapid evolution of coral proteins responsible for interaction with the environment. PLoS ONE 2011, 6:e20392.
-
(2011)
PLoS ONE
, vol.6
, pp. e20392
-
-
Voolstra, C.R.1
-
63
-
-
66149189558
-
Identification of the novel protein QQS as a component of the starch metabolic network in Arabidopsis leaves
-
Li L., et al. Identification of the novel protein QQS as a component of the starch metabolic network in Arabidopsis leaves. Plant J. 2009, 58:485-498.
-
(2009)
Plant J.
, vol.58
, pp. 485-498
-
-
Li, L.1
-
64
-
-
85028113825
-
Iowa State University
-
Materials and method for modifying a biochemical component in a plant, US 20120222167 A1
-
Li, L. and Wurtele, E.S., Iowa State University. Materials and method for modifying a biochemical component in a plant, US 20120222167 A1.
-
-
-
Li, L.1
Wurtele, E.S.2
-
65
-
-
84922652743
-
The QQS orphan gene of Arabidopsis modulates carbon allocation in soybean
-
Li L., Wurtele E.S. The QQS orphan gene of Arabidopsis modulates carbon allocation in soybean. Plant Biotechnol. J. 2014, 10.1111/pbi.12238.
-
(2014)
Plant Biotechnol. J.
-
-
Li, L.1
Wurtele, E.S.2
-
66
-
-
79955887707
-
Two splice variants of the IDD14 transcription factor competitively form nonfunctional heterodimers which may regulate starch metabolism
-
Seo P.J., et al. Two splice variants of the IDD14 transcription factor competitively form nonfunctional heterodimers which may regulate starch metabolism. Nat. Commun. 2011, 2:303.
-
(2011)
Nat. Commun.
, vol.2
, pp. 303
-
-
Seo, P.J.1
-
67
-
-
80053333872
-
Competitive inhibition of transcription factors by small interfering peptides
-
Seo P.J., et al. Competitive inhibition of transcription factors by small interfering peptides. Trends Plant Sci. 2011, 16:541-549.
-
(2011)
Trends Plant Sci.
, vol.16
, pp. 541-549
-
-
Seo, P.J.1
-
68
-
-
84878360308
-
Alternative splicing of transcription factors in plant responses to low temperature stress: mechanisms and functions
-
Seo P.J., et al. Alternative splicing of transcription factors in plant responses to low temperature stress: mechanisms and functions. Planta 2013, 237:1415-1424.
-
(2013)
Planta
, vol.237
, pp. 1415-1424
-
-
Seo, P.J.1
-
69
-
-
33645974276
-
The Arabidopsis cold-responsive transcriptome and its regulation by ICE1
-
Lee B.H. The Arabidopsis cold-responsive transcriptome and its regulation by ICE1. Plant Cell Online 2005, 17:3155-3175.
-
(2005)
Plant Cell Online
, vol.17
, pp. 3155-3175
-
-
Lee, B.H.1
-
70
-
-
79959949030
-
EXORDIUM-LIKE1 promotes growth during low carbon availability in Arabidopsis
-
Schroder F., et al. EXORDIUM-LIKE1 promotes growth during low carbon availability in Arabidopsis. Plant Physiol. 2011, 156:1620-1630.
-
(2011)
Plant Physiol.
, vol.156
, pp. 1620-1630
-
-
Schroder, F.1
-
71
-
-
84861321798
-
Massive human co-expression network and its medical applications
-
Feng Y., et al. Massive human co-expression network and its medical applications. Chem. Biodivers. 2012, 9:868-887.
-
(2012)
Chem. Biodivers.
, vol.9
, pp. 868-887
-
-
Feng, Y.1
-
72
-
-
33646831086
-
Arabidopsis PEN3/PDR8, an ATP binding cassette transporter, contributes to nonhost resistance to inappropriate pathogens that enter by direct penetration
-
Stein M. Arabidopsis PEN3/PDR8, an ATP binding cassette transporter, contributes to nonhost resistance to inappropriate pathogens that enter by direct penetration. Plant Cell Online 2006, 18:731-746.
-
(2006)
Plant Cell Online
, vol.18
, pp. 731-746
-
-
Stein, M.1
-
73
-
-
56349153291
-
A lesion-mimic syntaxin double mutant in Arabidopsis reveals novel complexity of pathogen defense signaling
-
Zhang Z., et al. A lesion-mimic syntaxin double mutant in Arabidopsis reveals novel complexity of pathogen defense signaling. Mol. Plant 2008, 1:510-527.
-
(2008)
Mol. Plant
, vol.1
, pp. 510-527
-
-
Zhang, Z.1
-
74
-
-
84893435322
-
The carbon/nitrogen regulator ARABIDOPSIS TOXICOS EN LEVADURA31 controls papilla formation in response to powdery mildew fungi penetration by interacting with SYNTAXIN OF PLANTS121 in Arabidopsis
-
Maekawa S., et al. The carbon/nitrogen regulator ARABIDOPSIS TOXICOS EN LEVADURA31 controls papilla formation in response to powdery mildew fungi penetration by interacting with SYNTAXIN OF PLANTS121 in Arabidopsis. Plant Physiol. 2014, 164:879-887.
-
(2014)
Plant Physiol.
, vol.164
, pp. 879-887
-
-
Maekawa, S.1
-
75
-
-
84865589996
-
AtGSNOR1 function is required for multiple developmental programs in Arabidopsis
-
Kwon E., et al. AtGSNOR1 function is required for multiple developmental programs in Arabidopsis. Planta 2012, 236:887-900.
-
(2012)
Planta
, vol.236
, pp. 887-900
-
-
Kwon, E.1
-
76
-
-
33646851407
-
Genome-wide transcriptional analysis of the Arabidopsis thaliana interaction with the plant pathogen Pseudomonas syringae pv. tomato DC3000 and the human pathogen Escherichia coli O157:H7
-
Thilmony R., et al. Genome-wide transcriptional analysis of the Arabidopsis thaliana interaction with the plant pathogen Pseudomonas syringae pv. tomato DC3000 and the human pathogen Escherichia coli O157:H7. Plant J. 2006, 46:34-53.
-
(2006)
Plant J.
, vol.46
, pp. 34-53
-
-
Thilmony, R.1
-
77
-
-
55549132299
-
Enhanced tolerance to oxidative stress in transgenic Arabidopsis plants expressing proteins of unknown function
-
Luhua S., et al. Enhanced tolerance to oxidative stress in transgenic Arabidopsis plants expressing proteins of unknown function. Plant Physiol. 2008, 148:280-292.
-
(2008)
Plant Physiol.
, vol.148
, pp. 280-292
-
-
Luhua, S.1
-
78
-
-
35648972090
-
POFs: what we don't know can hurt us
-
Gollery M., et al. POFs: what we don't know can hurt us. Trends Plant Sci. 2007, 12:492-496.
-
(2007)
Trends Plant Sci.
, vol.12
, pp. 492-496
-
-
Gollery, M.1
-
79
-
-
77950666930
-
Interfamily transfer of a plant pattern-recognition receptor confers broad-spectrum bacterial resistance
-
Lacombe S., et al. Interfamily transfer of a plant pattern-recognition receptor confers broad-spectrum bacterial resistance. Nat. Biotechnol. 2010, 28:365-369.
-
(2010)
Nat. Biotechnol.
, vol.28
, pp. 365-369
-
-
Lacombe, S.1
-
80
-
-
79952358199
-
Cysteine-rich peptides (CRPs) mediate diverse aspects of cell-cell communication in plant reproduction and development
-
Marshall E., et al. Cysteine-rich peptides (CRPs) mediate diverse aspects of cell-cell communication in plant reproduction and development. J. Exp. Bot. 2011, 62:1677-1686.
-
(2011)
J. Exp. Bot.
, vol.62
, pp. 1677-1686
-
-
Marshall, E.1
-
81
-
-
84872130087
-
Spider-venom peptides: structure, pharmacology, and potential for control of insect pests
-
King G.F., Hardy M.C. Spider-venom peptides: structure, pharmacology, and potential for control of insect pests. Annu. Rev. Entomol. 2013, 58:475-496.
-
(2013)
Annu. Rev. Entomol.
, vol.58
, pp. 475-496
-
-
King, G.F.1
Hardy, M.C.2
-
82
-
-
77954706736
-
Mining on scorpion venom biodiversity
-
Rodríguez de la Vega R.C., et al. Mining on scorpion venom biodiversity. Toxicon 2010, 56:1155-1161.
-
(2010)
Toxicon
, vol.56
, pp. 1155-1161
-
-
Rodríguez de la Vega, R.C.1
-
83
-
-
79958072903
-
How filamentous pathogens co-opt plants: the ins and outs of fungal effectors
-
De Jonge R., et al. How filamentous pathogens co-opt plants: the ins and outs of fungal effectors. Curr. Opin. Plant Biol. 2011, 14:400-406.
-
(2011)
Curr. Opin. Plant Biol.
, vol.14
, pp. 400-406
-
-
De Jonge, R.1
-
85
-
-
78650122420
-
Genome expansion and gene loss in powdery mildew fungi reveal tradeoffs in extreme parasitism
-
Spanu P.D., et al. Genome expansion and gene loss in powdery mildew fungi reveal tradeoffs in extreme parasitism. Science 2010, 330:1543-1546.
-
(2010)
Science
, vol.330
, pp. 1543-1546
-
-
Spanu, P.D.1
-
86
-
-
45149121559
-
The novel Cladosporium fulvum lysin motif effector Ecp6 is a virulence factor with orthologues in other fungal species
-
Bolton M.D., et al. The novel Cladosporium fulvum lysin motif effector Ecp6 is a virulence factor with orthologues in other fungal species. Mol. Microbiol. 2008, 69:119-136.
-
(2008)
Mol. Microbiol.
, vol.69
, pp. 119-136
-
-
Bolton, M.D.1
-
87
-
-
77952190425
-
Tomato Cf resistance proteins mediate recognition of cognate homologous effectors from fungi pathogenic on dicots and monocots
-
Stergiopoulos I., et al. Tomato Cf resistance proteins mediate recognition of cognate homologous effectors from fungi pathogenic on dicots and monocots. Proc. Natl. Acad. Sci. U.S.A. 2010, 107:7610-7615.
-
(2010)
Proc. Natl. Acad. Sci. U.S.A.
, vol.107
, pp. 7610-7615
-
-
Stergiopoulos, I.1
-
88
-
-
84881613997
-
The role of protein effectors in plant-aphid interactions
-
Elzinga D.A., Jander G. The role of protein effectors in plant-aphid interactions. Curr. Opin. Plant Biol. 2013, 16:451-456.
-
(2013)
Curr. Opin. Plant Biol.
, vol.16
, pp. 451-456
-
-
Elzinga, D.A.1
Jander, G.2
-
89
-
-
84862496333
-
The map-1 gene family in root-knot nematodes, Meloidogyne spp.: a set of taxonomically restricted genes specific to clonal species
-
Tomalova I., et al. The map-1 gene family in root-knot nematodes, Meloidogyne spp.: a set of taxonomically restricted genes specific to clonal species. PLoS ONE 2012, 7:e38656.
-
(2012)
PLoS ONE
, vol.7
, pp. e38656
-
-
Tomalova, I.1
-
90
-
-
84883251802
-
The attack of the phytopathogens and the trumpet solo: Identification of a novel plant antifungal peptide with distinct fold and disulfide bond pattern
-
Mandal S.M., et al. The attack of the phytopathogens and the trumpet solo: Identification of a novel plant antifungal peptide with distinct fold and disulfide bond pattern. Biochimie 2013, 95:1939-1948.
-
(2013)
Biochimie
, vol.95
, pp. 1939-1948
-
-
Mandal, S.M.1
-
91
-
-
84887212396
-
A rice gene of de novo origin negatively regulates pathogen-induced defense response
-
Xiao W., et al. A rice gene of de novo origin negatively regulates pathogen-induced defense response. PLoS ONE 2009, 4:e4603.
-
(2009)
PLoS ONE
, vol.4
, pp. e4603
-
-
Xiao, W.1
-
92
-
-
84895534659
-
The Brassicaceae-specific EWR1 gene provides resistance to vascular wilt pathogens
-
Yadeta K.A., et al. The Brassicaceae-specific EWR1 gene provides resistance to vascular wilt pathogens. PLoS ONE 2014, 9:e88230.
-
(2014)
PLoS ONE
, vol.9
, pp. e88230
-
-
Yadeta, K.A.1
-
93
-
-
84876164436
-
Analysis of soluble protein contents from the nematocysts of a model sea anemone sheds light on venom evolution
-
Moran Y., et al. Analysis of soluble protein contents from the nematocysts of a model sea anemone sheds light on venom evolution. Mar. Biotechnol. (N.Y.) 2012, 15:329-339.
-
(2012)
Mar. Biotechnol. (N.Y.)
, vol.15
, pp. 329-339
-
-
Moran, Y.1
-
94
-
-
33746900032
-
Aurelin, a novel antimicrobial peptide from jellyfish Aurelia aurita with structural features of defensins and channel-blocking toxins
-
Ovchinnikova T.V., et al. Aurelin, a novel antimicrobial peptide from jellyfish Aurelia aurita with structural features of defensins and channel-blocking toxins. Biochem. Biophys. Res. Commun. 2006, 348:514-523.
-
(2006)
Biochem. Biophys. Res. Commun.
, vol.348
, pp. 514-523
-
-
Ovchinnikova, T.V.1
-
95
-
-
84870393617
-
Recombinant expression and solution structure of antimicrobial peptide aurelin from jellyfish Aurelia aurita
-
Shenkarev Z.O., et al. Recombinant expression and solution structure of antimicrobial peptide aurelin from jellyfish Aurelia aurita. Biochem. Biophys. Res. Commun. 2012, 429:63-69.
-
(2012)
Biochem. Biophys. Res. Commun.
, vol.429
, pp. 63-69
-
-
Shenkarev, Z.O.1
-
96
-
-
79960918219
-
Antimicrobial peptides from marine invertebrates: challenges and perspectives in marine antimicrobial peptide discovery
-
Sperstad S.V., et al. Antimicrobial peptides from marine invertebrates: challenges and perspectives in marine antimicrobial peptide discovery. Biotechnol. Adv. 2011, 29:519-530.
-
(2011)
Biotechnol. Adv.
, vol.29
, pp. 519-530
-
-
Sperstad, S.V.1
-
97
-
-
37249039910
-
Evolution in the fast lane: rapidly evolving sex-related genes in Drosophila
-
Haerty W., et al. Evolution in the fast lane: rapidly evolving sex-related genes in Drosophila. Genetics 2007, 177:1321-1335.
-
(2007)
Genetics
, vol.177
, pp. 1321-1335
-
-
Haerty, W.1
-
98
-
-
57749119299
-
Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
-
Wang Y., et al. Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis. Plant Physiol. 2008, 148:1201-1211.
-
(2008)
Plant Physiol.
, vol.148
, pp. 1201-1211
-
-
Wang, Y.1
-
99
-
-
84876872011
-
The hourglass and the early conservation models - co-existing patterns of developmental constraints in vertebrates
-
Piasecka B., et al. The hourglass and the early conservation models - co-existing patterns of developmental constraints in vertebrates. PLoS Genet. 2013, 9:e1003476.
-
(2013)
PLoS Genet.
, vol.9
, pp. e1003476
-
-
Piasecka, B.1
-
100
-
-
78650120369
-
Gene expression divergence recapitulates the developmental hourglass model
-
Kalinka A.T., et al. Gene expression divergence recapitulates the developmental hourglass model. Nature 2010, 468:811-814.
-
(2010)
Nature
, vol.468
, pp. 811-814
-
-
Kalinka, A.T.1
-
101
-
-
84867068639
-
A transcriptomic hourglass in plant embryogenesis
-
Quint M., et al. A transcriptomic hourglass in plant embryogenesis. Nature 2012, 490:98-101.
-
(2012)
Nature
, vol.490
, pp. 98-101
-
-
Quint, M.1
-
102
-
-
79955490827
-
The multiple origins of complex multicellularity
-
Knoll A.H. The multiple origins of complex multicellularity. Annu. Rev. Earth Planet. Sci. 2011, 39:217-239.
-
(2011)
Annu. Rev. Earth Planet. Sci.
, vol.39
, pp. 217-239
-
-
Knoll, A.H.1
-
103
-
-
0141537020
-
The behavioral and developmental physiology of nematocysts
-
Kass-Simon G., Scappaticci A.A. The behavioral and developmental physiology of nematocysts. Can. J. Zool. 2002, 80:1772-1794.
-
(2002)
Can. J. Zool.
, vol.80
, pp. 1772-1794
-
-
Kass-Simon, G.1
Scappaticci, A.A.2
-
104
-
-
35548980904
-
The evolutionary emergence of cell type-specific genes inferred from the gene expression analysis of Hydra
-
Hwang J.S., et al. The evolutionary emergence of cell type-specific genes inferred from the gene expression analysis of Hydra. Proc. Natl. Acad. Sci. U.S.A. 2007, 104:14735-14740.
-
(2007)
Proc. Natl. Acad. Sci. U.S.A.
, vol.104
, pp. 14735-14740
-
-
Hwang, J.S.1
-
105
-
-
84869778558
-
Aphids evolved novel secreted proteins for symbiosis with bacterial endosymbiont
-
Shigenobu S., Stern D.L. Aphids evolved novel secreted proteins for symbiosis with bacterial endosymbiont. Proc. R. Soc. B: Biol. Sci. 2012, 280:20121952.
-
(2012)
Proc. R. Soc. B: Biol. Sci.
, vol.280
, pp. 20121952
-
-
Shigenobu, S.1
Stern, D.L.2
-
106
-
-
79961005598
-
Global analysis of proline-rich tandem repeat proteins reveals broad phylogenetic diversity in plant secretomes
-
Newman A.M., Cooper J.B. Global analysis of proline-rich tandem repeat proteins reveals broad phylogenetic diversity in plant secretomes. PLoS ONE 2011, 6:e23167.
-
(2011)
PLoS ONE
, vol.6
, pp. e23167
-
-
Newman, A.M.1
Cooper, J.B.2
-
107
-
-
84862996527
-
The rise of chemodiversity in plants
-
Weng J-K., et al. The rise of chemodiversity in plants. Science 2012, 336:1667-1670.
-
(2012)
Science
, vol.336
, pp. 1667-1670
-
-
Weng, J.-K.1
-
108
-
-
84861449462
-
Evolution of the chalcone-isomerase fold from fatty-acid binding to stereospecific catalysis
-
Ngaki M.N., et al. Evolution of the chalcone-isomerase fold from fatty-acid binding to stereospecific catalysis. Nature 2012, 485:530-533.
-
(2012)
Nature
, vol.485
, pp. 530-533
-
-
Ngaki, M.N.1
-
109
-
-
0022420493
-
Natural plant chemicals: sources of industrial and medicinal materials
-
Balandrin M.F. Natural plant chemicals: sources of industrial and medicinal materials. Science 1985, 228:1154-1160.
-
(1985)
Science
, vol.228
, pp. 1154-1160
-
-
Balandrin, M.F.1
-
110
-
-
61849111194
-
Acetyl-CoA - life at the metabolic nexus
-
Oliver D.J., et al. Acetyl-CoA - life at the metabolic nexus. Plant Sci. 2009, 176:597-601.
-
(2009)
Plant Sci.
, vol.176
, pp. 597-601
-
-
Oliver, D.J.1
-
111
-
-
84903581554
-
The origin and biosynthesis of the benzenoid moiety of ubiquinone (coenzyme Q) in Arabidopsis
-
Block A., et al. The origin and biosynthesis of the benzenoid moiety of ubiquinone (coenzyme Q) in Arabidopsis. Plant Cell 2014, 26:1938-1948.
-
(2014)
Plant Cell
, vol.26
, pp. 1938-1948
-
-
Block, A.1
-
112
-
-
0033779923
-
Genetics and biochemistry of secondary metabolites in plants: an evolutionary perspective
-
Pichersky E., Gang D.R. Genetics and biochemistry of secondary metabolites in plants: an evolutionary perspective. Trends Plant Sci. 2000, 5:439-445.
-
(2000)
Trends Plant Sci.
, vol.5
, pp. 439-445
-
-
Pichersky, E.1
Gang, D.R.2
-
113
-
-
84883391014
-
The investment in scent: time-resolved metabolic processes in developing volatile-producing Nigella sativa L. Seeds
-
Xue W., et al. The investment in scent: time-resolved metabolic processes in developing volatile-producing Nigella sativa L. Seeds. PLoS ONE 2013, 8:e73061.
-
(2013)
PLoS ONE
, vol.8
, pp. e73061
-
-
Xue, W.1
-
114
-
-
84866934692
-
The phenylpropanoid pathway in Arabidopsis
-
Fraser C.M., Chapple C. The phenylpropanoid pathway in Arabidopsis. Arabidopsis Book 2011, 9:e0152.
-
(2011)
Arabidopsis Book
, vol.9
, pp. e0152
-
-
Fraser, C.M.1
Chapple, C.2
-
115
-
-
68249140383
-
The 1001 genomes project for Arabidopsis thaliana
-
Weigel D., Mott R. The 1001 genomes project for Arabidopsis thaliana. Genome Biol. 2009, 10:107.
-
(2009)
Genome Biol.
, vol.10
, pp. 107
-
-
Weigel, D.1
Mott, R.2
-
116
-
-
84881026985
-
Massive genomic variation and strong selection in Arabidopsis thaliana lines from Sweden
-
Long Q., et al. Massive genomic variation and strong selection in Arabidopsis thaliana lines from Sweden. Nat. Genet. 2013, 45:884-890.
-
(2013)
Nat. Genet.
, vol.45
, pp. 884-890
-
-
Long, Q.1
-
117
-
-
80053132716
-
Multiple reference genomes and transcriptomes for Arabidopsis thaliana
-
Gan X., et al. Multiple reference genomes and transcriptomes for Arabidopsis thaliana. Nature 2011, 477:419-423.
-
(2011)
Nature
, vol.477
, pp. 419-423
-
-
Gan, X.1
-
118
-
-
78649817356
-
Dated molecular phylogenies indicate a Miocene origin for Arabidopsis thaliana
-
Beilstein M.A., et al. Dated molecular phylogenies indicate a Miocene origin for Arabidopsis thaliana. Proc. Natl. Acad. Sci. U.S.A. 2010, 107:18724-18728.
-
(2010)
Proc. Natl. Acad. Sci. U.S.A.
, vol.107
, pp. 18724-18728
-
-
Beilstein, M.A.1
-
119
-
-
62649125150
-
Rosid radiation and the rapid rise of angiosperm-dominated forests
-
Wang H., et al. Rosid radiation and the rapid rise of angiosperm-dominated forests. Proc. Natl. Acad. Sci. U.S.A. 2009, 106:3853-3858.
-
(2009)
Proc. Natl. Acad. Sci. U.S.A.
, vol.106
, pp. 3853-3858
-
-
Wang, H.1
-
120
-
-
37549054628
-
Using plastid genome-scale data to resolve enigmatic relationships among basal angiosperms
-
Moore M.J., et al. Using plastid genome-scale data to resolve enigmatic relationships among basal angiosperms. Proc. Natl. Acad. Sci. U.S.A. 2007, 104:19363-19368.
-
(2007)
Proc. Natl. Acad. Sci. U.S.A.
, vol.104
, pp. 19363-19368
-
-
Moore, M.J.1
-
121
-
-
1842431898
-
Ferns diversified in the shadow of angiosperms
-
Schneider H., et al. Ferns diversified in the shadow of angiosperms. Nature 2004, 428:553-557.
-
(2004)
Nature
, vol.428
, pp. 553-557
-
-
Schneider, H.1
-
122
-
-
0037007019
-
Rate heterogeneity among lineages of tracheophytes: integration of molecular and fossil data and evidence for molecular living fossils
-
Soltis P.S., et al. Rate heterogeneity among lineages of tracheophytes: integration of molecular and fossil data and evidence for molecular living fossils. Proc. Natl. Acad. Sci. U.S.A. 2002, 99:4430-4435.
-
(2002)
Proc. Natl. Acad. Sci. U.S.A.
, vol.99
, pp. 4430-4435
-
-
Soltis, P.S.1
-
123
-
-
2942568227
-
A molecular timescale of eukaryote evolution and the rise of complex multicellular life
-
Hedges S., et al. A molecular timescale of eukaryote evolution and the rise of complex multicellular life. BMC Evol. Biol. 2004, 4:2.
-
(2004)
BMC Evol. Biol.
, vol.4
, pp. 2
-
-
Hedges, S.1
-
124
-
-
1642534172
-
A genomic timescale for the origin of eukaryotes
-
Hedges S.B., et al. A genomic timescale for the origin of eukaryotes. BMC Evol. Biol. 2001, 1:4.
-
(2001)
BMC Evol. Biol.
, vol.1
, pp. 4
-
-
Hedges, S.B.1
-
125
-
-
84890686885
-
Microbially induced sedimentary structures recording an ancient ecosystem in the ca. 3.48 billion-year-old Dresser Formation, Pilbara, Western Australia
-
Noffke N., et al. Microbially induced sedimentary structures recording an ancient ecosystem in the ca. 3.48 billion-year-old Dresser Formation, Pilbara, Western Australia. Astrobiology 2013, 13:1103-1124.
-
(2013)
Astrobiology
, vol.13
, pp. 1103-1124
-
-
Noffke, N.1
-
126
-
-
84874977344
-
A global approach to analysis and interpretation of metabolic data for plant natural product discovery
-
Hur M., et al. A global approach to analysis and interpretation of metabolic data for plant natural product discovery. Nat. Prod. Rep. 2013, 30:565-583.
-
(2013)
Nat. Prod. Rep.
, vol.30
, pp. 565-583
-
-
Hur, M.1
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