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Volumn 12, Issue 10, 2011, Pages 692-702

The evolutionary origin of orphan genes

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Indexed keywords

GENE PRODUCT;

EID: 80052969570     PISSN: 14710056     EISSN: 14710064     Source Type: Journal    
DOI: 10.1038/nrg3053     Document Type: Review
Times cited : (552)

References (100)
  • 2
    • 0017771466 scopus 로고
    • Evolution and tinkering
    • Jacob, F. Evolution and tinkering. Science 196, 1161-1166 (1977).
    • (1977) Science , vol.196 , pp. 1161-1166
    • Jacob, F.1
  • 3
    • 0016669094 scopus 로고
    • Evolution at two levels in humans and chimpanzees
    • King, M.-C. & Wilson, A. C. Evolution at two levels in humans and chimpanzees. Science 188, 107-116 (1975).
    • (1975) Science , vol.188 , pp. 107-116
    • King, M.-C.1    Wilson, A.C.2
  • 4
    • 0037500141 scopus 로고    scopus 로고
    • Evolution by gene duplication: An update
    • DOI 10.1016/S0169-5347(03)00033-8
    • Zhang, J. Evolution by gene duplication: an update. Trends Ecol. Evol. 18, 292-298 (2003). (Pubitemid 36631749)
    • (2003) Trends in Ecology and Evolution , vol.18 , Issue.6 , pp. 292-298
    • Zhang, J.1
  • 5
    • 46149104377 scopus 로고    scopus 로고
    • Evo-Devo and an Expanding Evolutionary Synthesis: A Genetic Theory of Morphological Evolution
    • DOI 10.1016/j.cell.2008.06.030, PII S0092867408008179
    • Carroll, S. B. Evo-devo and an expanding evolutionary synthesis: a genetic theory of morphological evolution. Cell 134, 25-36 (2008). (Pubitemid 351905747)
    • (2008) Cell , vol.134 , Issue.1 , pp. 25-36
    • Carroll, S.B.1
  • 6
    • 59849091566 scopus 로고    scopus 로고
    • The life and death of gene families
    • Demuth, J. P. & Hahn, M. W. The life and death of gene families. Bioessays 31, 29-39 (2009).
    • (2009) Bioessays , vol.31 , pp. 29-39
    • Demuth, J.P.1    Hahn, M.W.2
  • 7
    • 78649231644 scopus 로고    scopus 로고
    • Origins evolution, and phenotypic impact of new genes
    • Kaessmann, H. Origins, evolution, and phenotypic impact of new genes. Genome Res. 20, 1313-1326 (2010).
    • (2010) Genome Res. , vol.20 , pp. 1313-1326
    • Kaessmann, H.1
  • 9
    • 0242354129 scopus 로고    scopus 로고
    • The origin of new genes: Glimpses from the young and old
    • DOI 10.1038/nrg1204
    • Long, M., Betran, E., Thornton, K. & Wang, W. The origin of new genes: glimpses from the young and old. Nature Rev. Genet. 4, 865-875 (2003). (Pubitemid 37345613)
    • (2003) Nature Reviews Genetics , vol.4 , Issue.11 , pp. 865-875
    • Long, M.1    Betran, E.2    Thornton, K.3    Wang, W.4
  • 10
    • 56049106886 scopus 로고    scopus 로고
    • On the origin and evolution of new genes-a genomic and experimental perspective
    • Zhou, Q. & Wang, W. On the origin and evolution of new genes-a genomic and experimental perspective. J. Genet. Genomics 35, 639-648 (2008).
    • (2008) J. Genet. Genomics , vol.35 , pp. 639-648
    • Zhou, Q.1    Wang, W.2
  • 11
    • 0029894792 scopus 로고    scopus 로고
    • The yeast genome project: What did we learn?
    • DOI 10.1016/0168-9525(96)10027-5
    • Dujon, B. The yeast genome project: what did we learn? Trends Genet. 12, 263-270 (1996). (Pubitemid 26202681)
    • (1996) Trends in Genetics , vol.12 , Issue.7 , pp. 263-270
    • Dujon, B.1
  • 12
    • 0029897603 scopus 로고    scopus 로고
    • Bioinformatics and the discovery of gene function
    • DOI 10.1016/0168-9525(96)30057-7
    • Casari, G., De Daruvar, A., Sander, C. & Schneider, R. Bioinformatics and the discovery of gene function. Trends Genet. 12, 244-245 (1996). (Pubitemid 26202676)
    • (1996) Trends in Genetics , vol.12 , Issue.7 , pp. 244-245
    • Casari, G.1    De Daruvar, A.2    Sander, C.3    Schneider, R.4
  • 13
    • 0032871834 scopus 로고    scopus 로고
    • Finding families for genomic ORFans
    • Fischer D. & Eisenberg, D. Finding families for genomic ORFans. Bioinformatics 15, 759-7629(1999).
    • (1999) Bioinformatics , vol.15 , pp. 759-7629
    • Fischer, D.1    Eisenberg, D.2
  • 14
    • 69449089723 scopus 로고    scopus 로고
    • More than just orphans: Are taxonomically-restricted genes important in evolution?
    • Khalturin, K., Hemmrich, G., Fraune, S., Augustin, R. & Bosch, T. C. More than just orphans: are taxonomically-restricted genes important in evolution? Trends Genet. 25, 404-413 (2009).
    • (2009) Trends Genet. , vol.25 , pp. 404-413
    • Khalturin, K.1    Hemmrich, G.2    Fraune, S.3    Augustin, R.4    Bosch, T.C.5
  • 15
    • 39449104220 scopus 로고    scopus 로고
    • Identification and investigation of ORFans in the viral world
    • Yin, Y. & Fischer, D. Identification and investigation of ORFans in the viral world. BMC Genomics 9, 24 (2008).
    • (2008) BMC Genomics , vol.9 , pp. 24
    • Yin, Y.1    Fischer, D.2
  • 17
    • 14544279484 scopus 로고    scopus 로고
    • Inverse relationship between evolutionary rate and age of mammalian genes
    • DOI 10.1093/molbev/msi045
    • Albà, M. M. & Castresana, J. Inverse relationship between evolutionary rate and age of mammalian genes. Mol. Biol. Evol. 22, 598-606 (2005). (Pubitemid 40299509)
    • (2005) Molecular Biology and Evolution , vol.22 , Issue.3 , pp. 598-606
    • Alba, M.M.1    Castresana, J.2
  • 18
    • 28944445062 scopus 로고    scopus 로고
    • The "inverse relationship between evolutionary rate and age of mammalian genes" is an artifact of increased genetic distance with rate of evolution and time of divergence
    • DOI 10.1093/molbev/msj006
    • Elhaik, E., Sabath, N. & Graur, D. The "inverse relationship between evolutionary rate and age of mammalian genes" is an artifact of increased genetic distance with rate of evolution and time of divergence. Mol. Biol. Evol. 23, 1-3 (2006). (Pubitemid 41785945)
    • (2006) Molecular Biology and Evolution , vol.23 , Issue.1 , pp. 1-3
    • Elhaik, E.1    Sabath, N.2    Graur, D.3
  • 19
    • 34247488321 scopus 로고    scopus 로고
    • On homology searches by protein BLAST and the characterization of the age of genes
    • Albà, M. M. & Castresana, J. On homology searches by protein BLAST and the characterization of the age of genes. BMC Evol. Biol. 7, 53 (2007).
    • (2007) BMC Evol. Biol. , vol.7 , pp. 53
    • Albà, M.M.1    Castresana, J.2
  • 20
    • 66149123308 scopus 로고    scopus 로고
    • The universal distribution of evolutionary rates of genes and distinct characteristics of eukaryotic genes of different apparent ages
    • Wolf, Y. I., Novichkov, P. S., Karev, G. P., Koonin, E. V. & Lipman, D. J. The universal distribution of evolutionary rates of genes and distinct characteristics of eukaryotic genes of different apparent ages. Proc. Natl Acad. Sci. USA 106, 7273-7280 (2009).
    • (2009) Proc. Natl Acad. Sci. USA , vol.106 , pp. 7273-7280
    • Wolf, Y.I.1    Novichkov, P.S.2    Karev, G.P.3    Koonin, E.V.4    Lipman, D.J.5
  • 21
    • 77958497573 scopus 로고    scopus 로고
    • Relaxed purifying selection and possibly high rate of adaptation in primate lineage-specific genes
    • Cai, J. J. & Petrov, D. A. Relaxed purifying selection and possibly high rate of adaptation in primate lineage-specific genes. Genome Biol. Evol. 12, 393-409 (2010).
    • (2010) Genome Biol. Evol. , vol.12 , pp. 393-409
    • Cai, J.J.1    Petrov, D.A.2
  • 23
    • 35748936426 scopus 로고    scopus 로고
    • A phylostratigraphy approach to uncover the genomic history of major adaptations in metazoan lineages
    • DOI 10.1016/j.tig.2007.08.014, PII S0168952507002995
    • Domazet-Loso, T., Brajković, J. & Tautz, D. A phylostratigraphy approach to uncover the genomic history of major adaptations in metazoan lineages. Trends Genet. 23, 533-539 (2007). (Pubitemid 350052349)
    • (2007) Trends in Genetics , vol.23 , Issue.11 , pp. 533-539
    • Domazet-Loso, T.1    Brajkovic, J.2    Tautz, D.3
  • 24
    • 77952449083 scopus 로고    scopus 로고
    • Phylostratigraphic tracking of cancer genes suggests a link to the emergence of multicellularity in metazoa
    • Domazet-Loso, T. & Tautz, D. Phylostratigraphic tracking of cancer genes suggests a link to the emergence of multicellularity in metazoa. BMC Biol. 8, 66 (2010).
    • (2010) BMC Biol. , vol.8 , pp. 66
    • Domazet-Loso, T.1    Tautz, D.2
  • 25
    • 78650141540 scopus 로고    scopus 로고
    • A phylogenetically based transcriptome age index mirrors ontogenetic divergence patterns
    • Domazet-Loso, T. & Tautz, D. A phylogenetically based transcriptome age index mirrors ontogenetic divergence patterns. Nature 468, 815-818 (2010).
    • (2010) Nature , vol.468 , pp. 815-818
    • Domazet-Loso, T.1    Tautz, D.2
  • 26
    • 79954672317 scopus 로고    scopus 로고
    • Genome structural variation discovery and genotyping
    • Alkan, C., Coe, B. P. & Eichler, E. E. Genome structural variation discovery and genotyping. Nature Rev. Genet. 12, 363-376 (2011).
    • (2011) Nature Rev. Genet. , vol.12 , pp. 363-376
    • Alkan, C.1    Coe, B.P.2    Eichler, E.E.3
  • 27
    • 0034079713 scopus 로고    scopus 로고
    • Human LINE retrotransposons generate processed pseudogenes
    • DOI 10.1038/74184
    • Esnault, C., Maestre, J. & Heidmann, T. Human LINE retrotransposons generate processed pseudogenes. Nature Genet. 24, 363-367 (2000). (Pubitemid 30187433)
    • (2000) Nature Genetics , vol.24 , Issue.4 , pp. 363-367
    • Esnault, C.1    Maestre, J.2    Heidmann, T.3
  • 28
    • 57749177443 scopus 로고    scopus 로고
    • RNA-based gene duplication: Mechanistic and evolutionary insights
    • Kaessmann. H., Vinckenbosch, N. & Long, M. RNA-based gene duplication: mechanistic and evolutionary insights. Nature Rev. Genet. 10, 19-31 (2009).
    • (2009) Nature Rev. Genet. , vol.10 , pp. 19-31
    • Kaessmann, H.1    Vinckenbosch, N.2    Long, M.3
  • 29
    • 0025644510 scopus 로고
    • How big is the universe of exons?
    • Dorit, R. L., Schoenbach, L. & Gilbert, W. How big is the universe of exons? Science 250, 1377-1382 (1990). (Pubitemid 120031849)
    • (1990) Science , vol.250 , Issue.4986 , pp. 1377-1382
    • Dorit, R.L.1    Schoenbach, L.2    Gilbert, W.3
  • 30
    • 0032885169 scopus 로고    scopus 로고
    • Genome evolution and the evolution of exon-shuffling-a review
    • Patthy, L. Genome evolution and the evolution of exon-shuffling-a review. Gene 238, 103-114 (1999).
    • (1999) Gene , vol.238 , pp. 103-114
    • Patthy, L.1
  • 31
    • 0036851263 scopus 로고    scopus 로고
    • Signatures of domain shuffling in the human genome
    • DOI 10.1101/gr.520702
    • Kaessmann, H., Zöllner, S., Nekrutenko, A. & Li, W. H. Signatures of domain shuffling in the human genome. Genome Res. 12, 1642-1650 (2002). (Pubitemid 35363668)
    • (2002) Genome Research , vol.12 , Issue.11 , pp. 1642-1650
    • Kaessmann, H.1    Zollner, S.2    Nekrutenko, A.3    Li, W.-H.4
  • 32
    • 84155175837 scopus 로고    scopus 로고
    • Quantifying the mechanisms of domain gain in animal proteins
    • Buljan, M., Frankish, A. & Bateman, A. Quantifying the mechanisms of domain gain in animal proteins. Genome Biol. 11, R74 (2010).
    • (2010) Genome Biol. , vol.11
    • Buljan, M.1    Frankish, A.2    Bateman, A.3
  • 33
    • 67649695570 scopus 로고    scopus 로고
    • A hidden reservoir of integrative elements is the major source of recently acquired foreign genes and ORFans in archaeal and bacterial genomes
    • Cortez, D., Forterre, P. & Gribaldo, S. A hidden reservoir of integrative elements is the major source of recently acquired foreign genes and ORFans in archaeal and bacterial genomes. Genome Biol. 10, R65 (2009).
    • (2009) Genome Biol. , vol.10
    • Cortez, D.1    Forterre, P.2    Gribaldo, S.3
  • 35
    • 47649104484 scopus 로고    scopus 로고
    • Horizontal gene transfer in eukaryotic evolution
    • Keeling, P. J. & Palmer, J. F. Horizontal gene transfer in eukaryotic evolution. Nature Rev. Genet. 9, 605-618 (2008).
    • (2008) Nature Rev. Genet. , vol.9 , pp. 605-618
    • Keeling, P.J.1    Palmer, J.F.2
  • 36
    • 4744343021 scopus 로고    scopus 로고
    • The altered evolutionary trajectories of gene duplicates
    • DOI 10.1016/j.tig.2004.09.001, PII S0168952504002501
    • Lynch. M. & Katju, V. The altered evolutionary trajectories of gene duplicates. Trends Genet. 20, 544-549 (2004). (Pubitemid 39314561)
    • (2004) Trends in Genetics , vol.20 , Issue.11 , pp. 544-549
    • Lynch, M.1    Katju, V.2
  • 37
    • 56549119570 scopus 로고    scopus 로고
    • Turning a hobby into a job: How duplicated genes find new functions
    • DOI 10.1038/nrg2482, PII NRG2482
    • Conant, G. C. & Wolfe, K. H. Turning a hobby into a job: how duplicated genes find new functions. Nature Rev. Genet. 9, 938-950 (2008). (Pubitemid 352719432)
    • (2008) Nature Reviews Genetics , vol.9 , Issue.12 , pp. 938-950
    • Conant, G.C.1    Wolfe, K.H.2
  • 38
    • 55449135271 scopus 로고    scopus 로고
    • Oscillating evolution of a mammalian locus with overlapping reading frames: An XLαs/ALEX relay
    • Nekrutenko, A., Wadhawan, S., Goetting-Minesky, P. & Makova, K. D. Oscillating evolution of a mammalian locus with overlapping reading frames: an XLαs/ALEX relay. PLoS Genet. 1, e18 (2005).
    • (2005) PLoS Genet. , vol.1
    • Nekrutenko, A.1    Wadhawan, S.2    Goetting-Minesky, P.3    Makova, K.D.4
  • 39
  • 40
    • 50649090652 scopus 로고    scopus 로고
    • De novo origination of a new proteincoding gene in Saccharomyces cerevisiae
    • Cai, J. J., Zhao, R., Jiang, H. & Wang, W. De novo origination of a new proteincoding gene in Saccharomyces cerevisiae. Genetics 179, 487-496 (2008).
    • (2008) Genetics , vol.179 , pp. 487-496
    • Cai, J.J.1    Zhao, R.2    Jiang, H.3    Wang, W.4
  • 41
    • 70349270547 scopus 로고    scopus 로고
    • Emergence of a new gene from an intergenic region
    • Heinen, T. J., Staubach, F., Häming, D. & Tautz, D. Emergence of a new gene from an intergenic region. Curr. Biol. 19, 1527-1531 (2009).
    • (2009) Curr. Biol. , vol.19 , pp. 1527-1531
    • Heinen, T.J.1    Staubach, F.2    Häming, D.3    Tautz, D.4
  • 42
    • 70349645640 scopus 로고    scopus 로고
    • Recent de novo origin of human proteincoding genes
    • Knowles, D. G. & McLysaght, A. Recent de novo origin of human proteincoding genes. Genome Res. 19, 1752-1759 (2009).
    • (2009) Genome Res. , vol.19 , pp. 1752-1759
    • Knowles, D.G.1    McLysaght, A.2
  • 43
    • 77950521826 scopus 로고    scopus 로고
    • A de novo originated gene depresses budding yeast mating pathway and is repressed by the protein encoded by its antisense strand
    • Li, D. et al. A de novo originated gene depresses budding yeast mating pathway and is repressed by the protein encoded by its antisense strand. Cell Res. 20, 408-420 (2010).
    • (2010) Cell Res. , vol.20 , pp. 408-420
    • Li, D.1
  • 44
    • 77950801106 scopus 로고    scopus 로고
    • A human-specific de novo proteincoding gene associated with human brain functions
    • Li, C. Y. et al. A human-specific de novo proteincoding gene associated with human brain functions. PLoS Comput. Biol. 6, e1000734 (2010).
    • (2010) PLoS Comput. Biol. , vol.6
    • Li, C.Y.1
  • 46
    • 34250748633 scopus 로고    scopus 로고
    • Evidence for de novo evolution of testis-expressed genes in the Drosophila yakuba/Drosophila erecta clade
    • DOI 10.1534/genetics.106.069245
    • Begun, D. J., Lindfors, H. A., Kern, A. D. & Jones, C. D. Evidence for de novo evolution of testis-expressed genes in the Drosophila yakuba/Drosophila erecta clade. Genetics 176, 1131-1137 (2007). (Pubitemid 46961110)
    • (2007) Genetics , vol.176 , Issue.2 , pp. 1131-1137
    • Begun, D.J.1    Lindfors, H.A.2    Kern, A.D.3    Jones, C.D.4
  • 47
    • 50649097020 scopus 로고    scopus 로고
    • On the origin of new genes in Drosophila
    • Zhou, Q. et al. On the origin of new genes in Drosophila. Genome Res. 18, 1446-1455 (2008).
    • (2008) Genome Res. , vol.18 , pp. 1446-1455
    • Zhou, Q.1
  • 48
    • 60149097110 scopus 로고    scopus 로고
    • Origin of primate orphan genes: A comparative genomics approach
    • Toll-Riera, M. et al. Origin of primate orphan genes: a comparative genomics approach. Mol. Biol. Evol. 26, 603-612 (2009).
    • (2009) Mol. Biol. Evol. , vol.26 , pp. 603-612
    • Toll-Riera, M.1
  • 49
    • 77449140452 scopus 로고    scopus 로고
    • Identifying and quantifying orphan protein sequences in fungi
    • Ekman, D. & Elofsson, A. Identifying and quantifying orphan protein sequences in fungi. J. Mol. Biol. 396, 396-405 (2010).
    • (2010) J. Mol. Biol. , vol.396 , pp. 396-405
    • Ekman, D.1    Elofsson, A.2
  • 50
    • 77951115595 scopus 로고    scopus 로고
    • RNA dust: Where are the genes?
    • Carninci, P. RNA dust: where are the genes? DNA Res. 17, 51-59 (2010).
    • (2010) DNA Res. , vol.17 , pp. 51-59
    • Carninci, P.1
  • 51
    • 0037150676 scopus 로고    scopus 로고
    • Unique chromatin remodeling and transcriptional regulation in spermatogenesis
    • DOI 10.1126/science.1070963
    • Sassone-Corsi, P. Unique chromatin remodeling and transcriptional regulation in spermatogenesis. Science 296, 2176-2178 (2002). (Pubitemid 34680290)
    • (2002) Science , vol.296 , Issue.5576 , pp. 2176-2178
    • Sassone-Corsi, P.1
  • 52
    • 9644256051 scopus 로고    scopus 로고
    • Sexual selection, genetic conflict, selfish genes, and the atypical patterns of gene expression in spermatogenic cells
    • DOI 10.1016/j.ydbio.2004.09.031, PII S0012160604006682
    • Kleene, K. C. Sexual selection, genetic conflict, selfish genes, and the atypical patterns of gene expression in spermatogenic cells. Dev. Biol. 277, 16-26 (2005). (Pubitemid 39574251)
    • (2005) Developmental Biology , vol.277 , Issue.1 , pp. 16-26
    • Kleene, K.C.1
  • 53
    • 33646182934 scopus 로고    scopus 로고
    • An integrated view of protein evolution
    • Pál, C., Papp, B. & Lercher, M. J. An integrated view of protein evolution. Nature Rev. Genet. 7, 337-348 (2006).
    • (2006) Nature Rev. Genet. , vol.7 , pp. 337-348
    • Pál, C.1    Papp, B.2    Lercher, M.J.3
  • 54
    • 33745616793 scopus 로고    scopus 로고
    • Accelerated evolutionary rate may be responsible for the emergence of lineage-specific genes in Ascomycota
    • DOI 10.1007/s00239-004-0372-5
    • Cai, J. J., Woo, P. C., Lau, S. K., Smith, D. K. & Yuen, K. Y. Accelerated evolutionary rate may be responsible for the emergence of lineagespecific genes in ascomycota. J. Mol. Evol. 63, 1-11 (2006). (Pubitemid 43992000)
    • (2006) Journal of Molecular Evolution , vol.63 , Issue.1 , pp. 1-11
    • Cai, J.J.1    Woo, P.C.Y.2    Lau, S.K.P.3    Smith, D.K.4    Yuen, K.-Y.5
  • 55
    • 0142028990 scopus 로고    scopus 로고
    • An evolutionary analysis of orphan genes in Drosophila
    • DOI 10.1101/gr.1311003
    • Domazet-Loso, T. & Tautz, D. An evolutionary analysis of orphan genes in Drosophila. Genome Res. 13, 2213-2219 (2003). (Pubitemid 37265985)
    • (2003) Genome Research , vol.13 , Issue.10 , pp. 2213-2219
    • Domazet-Loso, T.1    Tautz, D.2
  • 56
    • 0034978556 scopus 로고    scopus 로고
    • Highly expressed genes in yeast evolve slowly
    • Pál, C., Papp, B. & Hurst, L. D. Highly expressed genes in yeast evolve slowly. Genetics 158, 927-931 (2001). (Pubitemid 32552328)
    • (2001) Genetics , vol.158 , Issue.2 , pp. 927-931
    • Pal, C.1    Papp, B.2    Hurst, L.D.3
  • 57
    • 5044252972 scopus 로고    scopus 로고
    • Gene expression intensity shapes evolutionary rates of the proteins encoded by the vertebrate genome
    • DOI 10.1534/genetics.104.028944
    • Subramanian, S. & Kumar, S. Gene expression intensity shapes evolutionary rates of the proteins encoded by the vertebrate genome. Genetics 168, 373-381 (2004). (Pubitemid 39346602)
    • (2004) Genetics , vol.168 , Issue.1 , pp. 373-381
    • Subramanian, S.1    Kumar, S.2
  • 58
    • 17744376961 scopus 로고    scopus 로고
    • Evolution of proteins and gene expression levels are coupled in Drosophila and are independently associated with mRNA abundance, protein length, and number of protein-protein interactions
    • DOI 10.1093/molbev/msi122
    • Lemos, B., Bettencourt, B. R., Meiklejohn, C. D. & Hartl, D. L. Evolution of proteins and gene expression levels are coupled in Drosophila and are independently associated with mRNA abundance, protein length, and number of protein-protein interactions. Mol. Biol. Evol. 22, 1345-1354 (2005). (Pubitemid 40577773)
    • (2005) Molecular Biology and Evolution , vol.22 , Issue.5 , pp. 1345-1354
    • Lemos, B.1    Bettencourt, B.R.2    Meiklejohn, C.D.3    Hartl, D.L.4
  • 59
    • 30744441602 scopus 로고    scopus 로고
    • A single determinant dominates the rate of yeast protein evolution
    • DOI 10.1093/molbev/msj038
    • Drummond, D. A., Raval, A. & Wilke, C. O. A single determinant dominates the rate of yeast protein evolution. Mol. Biol. Evol. 23, 327-337 (2006). (Pubitemid 43100047)
    • (2006) Molecular Biology and Evolution , vol.23 , Issue.2 , pp. 327-337
    • Drummond, D.A.1    Raval, A.2    Wilke, C.O.3
  • 60
    • 78649279918 scopus 로고    scopus 로고
    • Young proteins experience more variable selection pressures than old proteins
    • Vishnoi, A., Kryazhimskiy, S., Bazykin, G. A., Hannenhalli, S. & Plotkin, J. B. Young proteins experience more variable selection pressures than old proteins. Genome Res. 20, 1574-1581 (2010).
    • (2010) Genome Res. , vol.20 , pp. 1574-1581
    • Vishnoi, A.1    Kryazhimskiy, S.2    Bazykin, G.A.3    Hannenhalli, S.4    Plotkin, J.B.5
  • 62
    • 0033565762 scopus 로고    scopus 로고
    • Do essential genes evolve slowly?
    • DOI 10.1016/S0960-9822(99)80334-0
    • Hurst, L. D. & Smith, N. G. C. Do essential genes evolve slowly? Curr. Biol. 9, 747-750 (1999). (Pubitemid 29350853)
    • (1999) Current Biology , vol.9 , Issue.14 , pp. 747-750
    • Hurst, L.D.1    Smith, N.G.C.2
  • 63
    • 0035963414 scopus 로고    scopus 로고
    • Protein dispensability and rate of evolution
    • Hirsh, A. E. & Fraser, H. B. Protein dispensability and rate of evolution. Nature 411, 1046-1049 (2001).
    • (2001) Nature , vol.411 , pp. 1046-1049
    • Hirsh, A.E.1    Fraser, H.B.2
  • 65
    • 47549097539 scopus 로고    scopus 로고
    • Mistranslation-Induced Protein Misfolding as a Dominant Constraint on Coding-Sequence Evolution
    • DOI 10.1016/j.cell.2008.05.042, PII S0092867408007058
    • Drummond, D. A. & Wilke, C. O. Mistranslation-induced protein misfolding as a dominant constraint on coding-sequence evolution. Cell 134, 341-352 (2008). (Pubitemid 352010328)
    • (2008) Cell , vol.134 , Issue.2 , pp. 341-352
    • Drummond, D.A.1    Wilke, C.O.2
  • 66
    • 0142124263 scopus 로고    scopus 로고
    • Gene loss, protein sequence divergence, gene dispensability, expression level, and interactivity are correlated in eukaryotic evolution
    • DOI 10.1101/gr.1589103
    • Krylov, D. M., Wolf, Y. I., Rogozin, I. B. & Koonin, E. V. Gene loss, protein sequence divergence, gene dispensability, expression level, and interactivity are correlated in eukaryotic evolution. Genome Res. 13, 2229-2235 (2003). (Pubitemid 37265987)
    • (2003) Genome Research , vol.13 , Issue.10 , pp. 2229-2235
    • Krylov, D.M.1    Wolf, Y.I.2    Rogozin, I.B.3    Koonin, E.V.4
  • 67
    • 33846685946 scopus 로고    scopus 로고
    • Gene loss rate: A probabilistic measure for the conservation of eukaryotic genes
    • Borenstein, E., Shlomi, T., Ruppin, E. & Sharan, R. Gene loss rate: a probabilistic measure for the conservation of eukaryotic genes. Nucleic Acids Res. 35, e7 (2007).
    • (2007) Nucleic Acids Res. , vol.35
    • Borenstein, E.1    Shlomi, T.2    Ruppin, E.3    Sharan, R.4
  • 68
    • 0032575722 scopus 로고    scopus 로고
    • A neoproterozoic snowball earth
    • Hoffman, P. F., Kaufman, A. J., Halverson, G. P. & Schrag, D. P. A neoproterozoic snowball earth. Science 281, 1342-1346 (1998). (Pubitemid 28406824)
    • (1998) Science , vol.281 , Issue.5381 , pp. 1342-1346
    • Hoffman, P.F.1    Kaufman, A.J.2    Halverson, G.P.3    Schrag, D.P.4
  • 69
    • 62649125150 scopus 로고    scopus 로고
    • Rosid radiation and the rapid rise of angiosperm-dominated forests
    • Wang, H. et al. Rosid radiation and the rapid rise of angiosperm-dominated forests. Proc. Natl Acad. Sci. USA 106, 3853-3858 (2009).
    • (2009) Proc. Natl Acad. Sci. USA , vol.106 , pp. 3853-3858
    • Wang, H.1
  • 70
    • 70349637633 scopus 로고    scopus 로고
    • Darwinian alchemy: Human genes from noncoding DNA
    • Siepel, A. Darwinian alchemy: human genes from noncoding DNA. Genome Res. 19, 1693-1695 (2009).
    • (2009) Genome Res. , vol.19 , pp. 1693-1695
    • Siepel, A.1
  • 71
    • 22244450719 scopus 로고    scopus 로고
    • Protein families and their evolution - A structural perspective
    • DOI 10.1146/annurev.biochem.74.082803.133029
    • Orengo, C. A. & Thornton, J. M. Protein families and their evolution-a structural perspective. Annu. Rev. Biochem. 74, 867-900 (2005). (Pubitemid 40995526)
    • (2005) Annual Review of Biochemistry , vol.74 , pp. 867-900
    • Orengo, C.A.1    Thornton, J.M.2
  • 72
    • 0031626899 scopus 로고    scopus 로고
    • Function driven protein evolution. A possible proto-protein for the RNA-binding proteins
    • Fetrow, J. S. & Godzik, A. Function driven protein evolution. A possible proto-protein for the RNA-binding proteins. Pac. Symp. Biocomput. 3, 485-496 (1998).
    • (1998) Pac. Symp. Biocomput. , vol.3 , pp. 485-496
    • Fetrow, J.S.1    Godzik, A.2
  • 73
    • 0035783055 scopus 로고    scopus 로고
    • On the evolution of protein folds: Are similar motifs in different protein folds the result of convergence, insertion, or relics of an ancient peptide world? J
    • Lupas, A. N., Ponting, C. P. & Russell, R. B. On the evolution of protein folds: are similar motifs in different protein folds the result of convergence, insertion, or relics of an ancient peptide world? J. Struct. Biol. 134, 191-203 (2001).
    • (2001) Struct. Biol. , vol.134 , pp. 191-203
    • Lupas, A.N.1    Ponting, C.P.2    Russell, R.B.3
  • 74
    • 0041317258 scopus 로고    scopus 로고
    • More than the sum of their parts: On the evolution of proteins from peptides
    • DOI 10.1002/bies.10321
    • Söding, J. & Lupas, A. N. More than the sum of their parts: on the evolution of proteins from peptides. Bioessays 25, 837-846 (2003). (Pubitemid 37081749)
    • (2003) BioEssays , vol.25 , Issue.9 , pp. 837-846
    • Soding, J.1    Lupas, A.N.2
  • 77
    • 43149094164 scopus 로고    scopus 로고
    • Pfam 10 years on: 10 000 families and still growing
    • Sammut, S. J., Finn, R. D. & Bateman, A. Pfam 10 years on: 10 000 families and still growing. Brief. Bioinform. 9, 210-219 (2008).
    • (2008) Brief. Bioinform. , pp. 210-219
    • Sammut, S.J.1    Finn, R.D.2    Bateman, A.3
  • 78
    • 67650497792 scopus 로고    scopus 로고
    • Nature of the protein universe
    • Levitt, M. Nature of the protein universe. Proc. Natl Acad. Sci. USA 106, 11079-11084 (2009).
    • (2009) Proc. Natl Acad. Sci. USA , vol.106 , pp. 11079-11084
    • Levitt, M.1
  • 79
    • 0037223416 scopus 로고    scopus 로고
    • Myriads of protein families, and still counting
    • Kunin, V. et al. Myriads of protein families, and still counting. Genome Biol. 4, 401 (2003).
    • (2003) Genome Biol. , vol.4 , pp. 401
    • Kunin, V.1
  • 80
    • 33947235074 scopus 로고    scopus 로고
    • The Sorcerer II global ocean sampling expedition: Expanding the universe of protein families
    • Yooseph. D. et al. The Sorcerer II global ocean sampling expedition: expanding the universe of protein families. PLoS Biol. 5, e16 (2007).
    • (2007) PLoS Biol. , vol.5
    • Yooseph, D.1
  • 81
    • 38549170925 scopus 로고    scopus 로고
    • MALISAM: A database of structurally analogous motifs in proteins
    • DOI 10.1093/nar/gkm698
    • Cheng, H., Kim, B. H. & Grishin, N. V. MALISAM: a database of structurally analogous motifs in proteins. Nucleic Acids Res. 36, D211-D217 (2008). (Pubitemid 351149724)
    • (2008) Nucleic Acids Research , vol.36 , Issue.SUPPL. 1
    • Cheng, H.1    Kim, B.-H.2    Grishin, N.V.3
  • 82
    • 33644872767 scopus 로고    scopus 로고
    • Comprehensive genome analysis of 203 genomes provides structural genomics with new insights into protein family space
    • Marsden, R. L., Lee, D., Maibaum, M., Yeats, C. & Orengo, C. A. Comprehensive genome analysis of 203 genomes provides structural genomics with new insights into protein family space. Nucleic Acids Res. 34, 1066-1080 (2006).
    • (2006) Nucleic Acids Res. , vol.34 , pp. 1066-1080
    • Marsden, R.L.1    Lee, D.2    Maibaum, M.3    Yeats, C.4    Orengo, C.A.5
  • 83
    • 17844379728 scopus 로고    scopus 로고
    • Identification and distribution of protein families in 120 completed genomes using gene3D
    • DOI 10.1002/prot.20409
    • Lee, D., Grant, A., Marsden, R. L. & Orengo, C. Identification and distribution of protein families in 120 completed genomes using Gene3D. Proteins 59, 603-615 (2005). (Pubitemid 40594303)
    • (2005) Proteins: Structure, Function and Genetics , vol.59 , Issue.3 , pp. 603-615
    • Lee, D.1    Grant, A.2    Marsden, R.L.3    Orengo, C.4
  • 84
    • 4344710320 scopus 로고    scopus 로고
    • Structural biology sheds light on the puzzle of genomic ORFans
    • Siew, N. & Fischer, D. Structural biology sheds light on the puzzle of genomic ORFans. J. Mol. Biol. 342, 369-373 (2004).
    • (2004) J. Mol. Biol. , pp. 369-373
    • Siew, N.1    Fischer, D.2
  • 85
    • 55849108484 scopus 로고    scopus 로고
    • Structural features and the persistence of acquired proteins
    • Narra, H. P., Cordes, M. H. & Ochman, H. Structural features and the persistence of acquired proteins. Proteomics 8, 4772-4781 (2008).
    • (2008) Proteomics , vol.8 , pp. 4772-4781
    • Narra, H.P.1    Cordes, M.H.2    Ochman, H.3
  • 86
    • 78650509490 scopus 로고    scopus 로고
    • Novel genes exhibit distinct patterns of function acquisition and network integration
    • Capra, J. A., Pollard, K. S. & Singh, M. Novel genes exhibit distinct patterns of function acquisition and network integration. Genome Biol. 11, R127 (2010).
    • (2010) Genome Biol. , vol.11
    • Capra, J.A.1    Pollard, K.S.2    Singh, M.3
  • 87
    • 33747856166 scopus 로고    scopus 로고
    • The MPI Bioinformatics Toolkit for protein sequence analysis
    • DOI 10.1093/nar/gkl217
    • Biegert, A., Mayer, C., Remmert, M., Söding, J. & Lupas, A. The MPI Toolkit for protein sequence analysis. Nucleic Acids Res. 34, W335-W339 (2006). (Pubitemid 44529789)
    • (2006) Nucleic Acids Research , vol.34 , Issue.WEB. SERV. ISS.
    • Biegert, A.1    Mayer, C.2    Remmert, M.3    Soding, J.4    Lupas, A.N.5
  • 88
    • 14644435825 scopus 로고    scopus 로고
    • Intrinsically unstructured proteins and their functions
    • DOI 10.1038/nrm1589
    • Dyson, H. J. & Wright, P. E. Intrinsically unstructured proteins and their functions. Nature Rev. Mol. Cell Biol. 6, 197-208 (2005). (Pubitemid 40314921)
    • (2005) Nature Reviews Molecular Cell Biology , vol.6 , Issue.3 , pp. 197-208
    • Dyson, H.J.1    Wright, P.E.2
  • 89
    • 34547943482 scopus 로고    scopus 로고
    • Molecular Principles of the Interactions of Disordered Proteins
    • DOI 10.1016/j.jmb.2007.07.004, PII S0022283607009205
    • Mészáros, B., Tompa, P., Simon, I. & Dosztányi, Z. Molecular principles of the interactions of disordered proteins. J. Mol. Biol. 372, 549-561 (2007). (Pubitemid 47267965)
    • (2007) Journal of Molecular Biology , vol.372 , Issue.2 , pp. 549-561
    • Meszaros, B.1    Tompa, P.2    Simon, I.3    Dosztanyi, Z.4
  • 90
    • 79958059909 scopus 로고    scopus 로고
    • Protein disorder-a breakthrough invention of evolution? Curr
    • Schlessinger, A. et al. Protein disorder-a breakthrough invention of evolution? Curr. Opin. Struct. Biol. 21, 412-418 (2011).
    • (2011) Opin. Struct. Biol. , vol.21 , pp. 412-418
    • Schlessinger, A.1
  • 92
    • 0028605603 scopus 로고
    • Temporal colinearity and the phylotypic progression: A basis for the stability of a vertebrate Bauplan and the evolution of morphologies through heterochrony
    • Duboule, D. Temporal colinearity and the phylotypic progression: a basis for the stability of a vertebrate Bauplan and the evolution of morphologies through heterochrony. Dev. Suppl. 1994, 135-142 (1994).
    • (1994) Dev. Suppl. , vol.1994 , pp. 135-142
    • Duboule, D.1
  • 93
    • 78650385315 scopus 로고    scopus 로고
    • New genes in Drosophila quickly become essential
    • Chen, S., Zhang, Y. E. & Long, M. New genes in Drosophila quickly become essential. Science 330, 1682-1685 (2010).
    • (2010) Science , vol.330 , pp. 1682-1685
    • Chen, S.1    Zhang, Y.E.2    Long, M.3
  • 94
    • 77955490026 scopus 로고    scopus 로고
    • Expansion of the protein repertoire in newly explored environments: Human gut microbiome specific protein families
    • Ellrott, K., Jaroszewski, L., Li, W., Wooley, J. C. & Godzik, A. Expansion of the protein repertoire in newly explored environments: human gut microbiome specific protein families. PLoS Comput. Biol. 6, e1000798 (2010).
    • (2010) PLoS Comput. Biol. , vol.6
    • Ellrott, K.1    Jaroszewski, L.2    Li, W.3    Wooley, J.C.4    Godzik, A.5
  • 95
    • 42549143433 scopus 로고    scopus 로고
    • Consistent and contrasting properties of lineage-specific genes in the apicomplexan parasites Plasmodium and Theileria
    • Kuo, C. H. & Kissinger, J. C. Consistent and contrasting properties of lineage-specific genes in the apicomplexan parasites Plasmodium and Theileria. BMC Evol. Biol. 8, 108 (2008).
    • (2008) BMC Evol. Biol. , vol.8 , pp. 108
    • Kuo, C.H.1    Kissinger, J.C.2
  • 96
    • 56849129816 scopus 로고    scopus 로고
    • A novel gene family controls species-specific morphological traits in Hydra
    • Khalturin, K. et al. A novel gene family controls species-specific morphological traits in Hydra. PLoS Biol. 6, e278 (2008).
    • (2008) PLoS Biol. , vol.6
    • Khalturin, K.1
  • 97
    • 79551632781 scopus 로고    scopus 로고
    • The ecoresponsive genome of Daphnia pulex
    • Colbourne, J. K. et al. The ecoresponsive genome of Daphnia pulex. Science 331, 555-561 (2011).
    • (2011) Science , vol.331 , pp. 555-561
    • Colbourne, J.K.1
  • 98
    • 0034332996 scopus 로고    scopus 로고
    • A genetic uncertainty problem
    • Tautz, D. A genetic uncertainty problem. Trends Genet. 16, 475-477 (2000).
    • (2000) Trends Genet. , vol.16 , pp. 475-477
    • Tautz, D.1
  • 99
    • 34247855863 scopus 로고    scopus 로고
    • The locus of evolution: Evo devo and the genetics of adaptation
    • DOI 10.1111/j.1558-5646.2007.00105.x
    • Hoekstra, H. E. & Coyne, J. A. The locus of evolution: evo devo and the genetics of adaptation. Evolution 61, 995-1016 (2007). (Pubitemid 46699436)
    • (2007) Evolution , vol.61 , Issue.5 , pp. 995-1016
    • Hoekstra, H.E.1    Coyne, J.A.2
  • 100
    • 33751381461 scopus 로고    scopus 로고
    • TimeTree: A public knowledge-base of divergence times among organisms
    • DOI 10.1093/bioinformatics/btl505
    • Hedges, S. B., Dudley, J. & Kumar, S. TimeTree: a public knowledge-base of divergence times among organisms. Bioinformatics 22, 2971-2972 (2006). (Pubitemid 44811578)
    • (2006) Bioinformatics , vol.22 , Issue.23 , pp. 2971-2972
    • Hedges, S.B.1    Dudley, J.2    Kumar, S.3


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