Evidence for de novo evolution of testis-expressed genes in the Drosophila yakuba/Drosophila erecta clade

Genetics

Volumn 176, Issue 2, 2007, Pages 1131-1137

  Begun, David J ^a   Lindfors, Heather A ^a   Kern, Andrew D ^a   Jones, Corbin D ^b  

^a UNIVERSITY OF CALIFORNIA   (United States)

^b UNIVERSITY OF NORTH CAROLINA SCHOOL OF MEDICINE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

RNA;

ARTICLE; COMPARATIVE STUDY; CONTROLLED STUDY; DROSOPHILA; DROSOPHILA ERECTA; DROSOPHILA MELANOGASTER; DROSOPHILA YAKUBA; EXPRESSED SEQUENCE TAG; GENE FUNCTION; GENE IDENTIFICATION; NONHUMAN; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; PRIORITY JOURNAL; TESTIS; X CHROMOSOME;

ANIMALS; DNA, COMPLEMENTARY; DROSOPHILA; EXPRESSED SEQUENCE TAGS; GENE EXPRESSION REGULATION; MALE; MOLECULAR SEQUENCE DATA; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; RNA; RNA, MESSENGER; TESTIS; TRANSCRIPTION, GENETIC; X CHROMOSOME;

DROSOPHILA MELANOGASTER; DROSOPHILA YAKUBA; MELANOGASTER SUBGROUP;

EID: 34250748633     PISSN: 00166731     EISSN: 00166731     Source Type: Journal    
DOI: 10.1534/genetics.106.069245     Document Type: Article

References (25)

1. BAI, Y., C. CASOLA, C. FESCHOTTE and E. BETRAN, 2007 Comparative genomics reveals a constant rate of origination and convergent acquisition of functional retrogenes in Drosophila. Genome Biol. 8(1): R11.
2. BEGUN, D. J., and H. A. LINDFORS, 2005 Rapid evolution of genomic Acp complement in the melanogaster subgroup of Drosophila. Mol. Biol. Evol. 22: 2010-2021.
3. BEGUN, D. J., H. A. LINDFORS, M. E. THOMPSON and A. K. HOLLOWAY, 2006 Recently evolved genes identified from Drosophila yakuba and D. erecta accessory gland expressed sequence tags. Genetics 172: 1675-1681.
4. BETRAN, E., and M. LONG, 2003 Dntf-2r, a young Drosophila retroposed gene with male specific expression. Genetics 164: 977-988.
5. BETRAN, E., K. THORNTON and M. LONG, 2002 Retroposed new genes out of the X in Drosophila. Genome Res. 12: 1854-1859.
6. BOUTANAEV, A. M., A. I. KALMYKOVA, Y. Y. SHEVELYOV and D. I. NURMINSKY, 2002 Large clusters of co-expressed genes in the Drosophila genome. Nature 420(6916): 666-669.
7. GUPTA, V., M. PARISI, D. STURGILL, R. NUTALL, M. DOCTOLERO et al., 2006 Global analysis of X-chromosome dosage compensation. J. Biol. 5(1): 3.
8. JONES, C. D., and D. J. BEGUN, 2005 Parallel evolution of chimeric fusion genes. Proc. Natl. Acad. Sci. USA 102: 11373-11378.
9. KENT, W. J., C. W. SUGNET, T. S. FUREY, K. M. ROSKIN, T. H. PRINGLE et al., 2002 The Human Genome Browser at UCSC. Genome Res. 12(6): 996-1006.
10. KORF, I., 2004 Gene finding in novel genomes. BMC Bioinformatics 5: 59.
11. LEVINE, M. T., C. D. JONES, A. D. KERN, H. A. LINDFORS and D. J. Begun, 2006 Novel genes derived from non-coding DNA in Drosophila melanogaster are frequently X-linked and show testis-biased expression. Proc. Natl. Acad. Sci USA 103: 9935-9939.
12. LI, W.-H., 1997 Molecular Evolution. Sinauer Associates, Sunderland, MA.
13. LONG, M., and C. H. LANGLEY, 1993 Natural selection and the origin of jingwei, a chimeric processed functional gene in Drosophila. Science 260: 91-95.
14. LONG, M., M. DEUTSCH, W. WANG, E. BETRAN, F. G. BRUNET et al., 2003 Origin of new genes: evidence from experimental and computational analysis. Genetica 118: 171-182.
15. LOPPIN, B, D. LEPETIT, S. DORUS, P. COUBLE and T. KARR, 2005 Origin and neofunctionalization of a Drosophila paternal effect gene essential for zygote viability. Curr. Biol. 15: 87-93.
16. MARCHLER-BAUER, A., J. B. ANDERSON, C. DEWEESE-SCOTT, N. D. FEDOROVA, L. Y. GEER et al., 2003 CDD: a curated Entrez database of conserved domain alignments. Nucleic Acids Res. 31: 383-387.
17. MCDONALD, J., and M. KREITMAN, 1991 Adaptive protein evolution at the Adh locus in Drosophila. Nature 351: 652-654.
18. NURMINSKY, D. I., M. V. NURMINSKAYA, D. DEAGUIAR and D. L. HARTL, 1998 Selective sweep of a newly evolved sperm-specific gene in Drosophila. Nature 396: 572-575.
19. OHNO, S., 1970 Evolution by Gene Duplication. Springer-Verlag, Berlin.
20. PARISI, M., R. NUTTALL, D. NAIMAN, G. BOUFFARD, J. MALLEY et al., 2003 Paucity of genes on the Drosophila X chromosome showing male-biased expression. Science 299: 697-700.
21. PRÖSCHEL, M., Z. ZHANG and J. PARSCH, 2006 Widespread adaptive evolution of Drosophila genes with sex-biased expression. Genetics 174: 893-900.
22. ROZAS, J., J. C. SANCHEZ-DELBARRIO, X. MESSEGYER and R. ROZAS, 2003 DnaSP, DNA polymorphism analysis by the coalescent and other methods. Bioinformatics 19: 2496-2497.
23. TUPY, J. L., A. M. BAILEY, G. DAILEY, M. EVANS-HOLM, C. W. SIEBEL et al., 2005 Identification of putative noncoding polyadenylated transcripts in Drosophila melanogaster. Proc. Natl. Acad. Sci. USA 102: 5495-5500.
24. WAGSTAFF, B. J., and D. J. BEGUN, 2005 Comparative genomics of accessory gland protein genes in Drosophila melanogaster and D. pseudoobscura. Mol. Biol. Evol. 22: 818-832.
25. WANG, W., H. YU and M. LONG, 2004 Duplication-degeneration as a mechanism of gene fission and the origin of new genes in Drosophila species. Nat. Genet. 36: 523-527.