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Volumn 9, Issue 10, 2014, Pages

Hybrid mice reveal parent-of-origin and Cis- and Trans-regulatory effects in the retina

Author keywords

[No Author keywords available]

Indexed keywords

ADULT; ANIMAL TISSUE; ARTICLE; CIS REGULATORY EFFECT; CIS REGULATORY ELEMENT; CONTROLLED STUDY; DNA STRUCTURE; GENE CONTROL; GENE EXPRESSION; GENE MAPPING; GENOME IMPRINTING; HYBRID MOUSE STRAIN; MOUSE; NONHUMAN; PARENT OF ORIGIN; PHOTORECEPTOR; RETINA; RETINA DISEASE; RNA SEQUENCE; TRANS REGULATORY EFFECT; ANIMAL; ANTIBODY SPECIFICITY; C57BL MOUSE; CHROMOSOME MAP; CROSS BREEDING; FEMALE; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION; GENE SILENCING; GENETICS; GENOME; HYBRIDIZATION; LIVER; MALE; METABOLISM; PHOTORECEPTOR CELL; REGULATORY SEQUENCE; X CHROMOSOME;

EID: 84908592948     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0109382     Document Type: Article
Times cited : (18)

References (77)
  • 1
    • 0021830601 scopus 로고
    • Cell differentiation in the retina of the mouse
    • Young RW (1985) Cell differentiation in the retina of the mouse. Anat Rec 212: 199-205.
    • (1985) Anat Rec , vol.212 , pp. 199-205
    • Young, R.W.1
  • 4
    • 39449091111 scopus 로고    scopus 로고
    • The cis-regulatory logic of the mammalian photoreceptor transcriptional network
    • Hsiau TH, Diaconu C, Myers CA, Lee J, Cepko CL, et al. (2007) The cis-regulatory logic of the mammalian photoreceptor transcriptional network. PLoS One 2: e643.
    • (2007) PLoS One , vol.2 , pp. e643
    • Hsiau, T.H.1    Diaconu, C.2    Myers, C.A.3    Lee, J.4    Cepko, C.L.5
  • 5
    • 77954879972 scopus 로고    scopus 로고
    • Transcriptional regulation of photoreceptor development and homeostasis in the mammalian retina
    • Swaroop A, Kim D, Forrest D (2010) Transcriptional regulation of photoreceptor development and homeostasis in the mammalian retina. Nat Rev Neurosci 11: 563-576.
    • (2010) Nat Rev Neurosci , vol.11 , pp. 563-576
    • Swaroop, A.1    Kim, D.2    Forrest, D.3
  • 6
    • 77956394013 scopus 로고    scopus 로고
    • CRX ChIP-seq reveals the cis-regulatory architecture of mouse photoreceptors
    • Corbo JC, Lawrence KA, Karlstetter M, Myers CA, Abdelaziz M, et al. (2010) CRX ChIP-seq reveals the cis-regulatory architecture of mouse photoreceptors. Genome Res 20: 1512-1525.
    • (2010) Genome Res , vol.20 , pp. 1512-1525
    • Corbo, J.C.1    Lawrence, K.A.2    Karlstetter, M.3    Myers, C.A.4    Abdelaziz, M.5
  • 7
    • 84860572048 scopus 로고    scopus 로고
    • Transcriptional regulation of rod photoreceptor homeostasis revealed by in vivo NRL targetome analysis
    • Hao H, Kim DS, Klocke B, Johnson KR, Cui K, et al. (2012) Transcriptional regulation of rod photoreceptor homeostasis revealed by in vivo NRL targetome analysis. PLoS Genet 8: e1002649.
    • (2012) PLoS Genet , vol.8 , pp. e1002649
    • Hao, H.1    Kim, D.S.2    Klocke, B.3    Johnson, K.R.4    Cui, K.5
  • 8
    • 84865790047 scopus 로고    scopus 로고
    • An integrated encyclopedia of DNA elements in the human genome
    • ENCODE Project Consortium (2012) An integrated encyclopedia of DNA elements in the human genome. Nature 489: 57-74.
    • (2012) Nature , vol.489 , pp. 57-74
    • ENCODE Project Consortium1
  • 9
    • 83855163414 scopus 로고    scopus 로고
    • Cis-regulatory elements: Molecular mechanisms and evolutionary processes underlying divergence
    • Wittkopp PJ, Kalay G (2012) Cis-regulatory elements: molecular mechanisms and evolutionary processes underlying divergence. Nat Rev Genet 13: 59-69.
    • (2012) Nat Rev Genet , vol.13 , pp. 59-69
    • Wittkopp, P.J.1    Kalay, G.2
  • 10
    • 33847057226 scopus 로고    scopus 로고
    • The evolutionary significance of cis-regulatory mutations
    • Wray GA (2007) The evolutionary significance of cis-regulatory mutations. Nat Rev Genet 8: 206-216.
    • (2007) Nat Rev Genet , vol.8 , pp. 206-216
    • Wray, G.A.1
  • 11
    • 65549086559 scopus 로고    scopus 로고
    • A yeast hybrid provides insight into the evolution of gene expression regulation
    • Tirosh I, Reikhav S, Levy AA, Barkai N (2009) A yeast hybrid provides insight into the evolution of gene expression regulation. Science 324: 659-662.
    • (2009) Science , vol.324 , pp. 659-662
    • Tirosh, I.1    Reikhav, S.2    Levy, A.A.3    Barkai, N.4
  • 12
    • 3042722019 scopus 로고    scopus 로고
    • Evolutionary changes in cis and trans gene regulation
    • Wittkopp PJ, Haerum BK, Clark AG (2004) Evolutionary changes in cis and trans gene regulation. Nature 430: 85-88.
    • (2004) Nature , vol.430 , pp. 85-88
    • Wittkopp, P.J.1    Haerum, B.K.2    Clark, A.G.3
  • 15
    • 84870538799 scopus 로고    scopus 로고
    • Extensive compensatory cis-trans regulation in the evolution of mouse gene expression
    • Goncalves A, Leigh-Brown S, Thybert D, Stefflova K, Turro E, et al. (2012) Extensive compensatory cis-trans regulation in the evolution of mouse gene expression. Genome Res 22: 2376-2384.
    • (2012) Genome Res , vol.22 , pp. 2376-2384
    • Goncalves, A.1    Leigh-Brown, S.2    Thybert, D.3    Stefflova, K.4    Turro, E.5
  • 16
    • 40949130385 scopus 로고    scopus 로고
    • Mapping of genetic modifiers of nr2e3 rd7/rd7 that suppress retinal degeneration and restore blue cone cells to normal quantity
    • Haider NB, Zhang W, Hurd R, Ikeda A, Nystuen AM, et al. (2008) Mapping of genetic modifiers of Nr2e3 rd7/rd7 that suppress retinal degeneration and restore blue cone cells to normal quantity. Mamm Genome 19: 145-154.
    • (2008) Mamm Genome , vol.19 , pp. 145-154
    • Haider, N.B.1    Zhang, W.2    Hurd, R.3    Ikeda, A.4    Nystuen, A.M.5
  • 17
    • 79960309098 scopus 로고    scopus 로고
    • Genetic variations strongly influence phenotypic outcome in the mouse retina
    • Jelcick AS, Yuan Y, Leehy BD, Cox LC, Silveira AC, et al. (2011) Genetic variations strongly influence phenotypic outcome in the mouse retina. PLoS One 6: e21858.
    • (2011) PLoS One , vol.6 , pp. e21858
    • Jelcick, A.S.1    Yuan, Y.2    Leehy, B.D.3    Cox, L.C.4    Silveira, A.C.5
  • 18
    • 0037028155 scopus 로고    scopus 로고
    • The mosaic structure of variation in the laboratory mouse genome
    • Wade CM, Kulbokas EJ 3rd, Kirby AW, Zody MC, Mullikin JC, et al. (2002) The mosaic structure of variation in the laboratory mouse genome. Nature 420: 574-578.
    • (2002) Nature , vol.420 , pp. 574-578
    • Wade, C.M.1    Kulbokas, E.J.2    Kirby, A.W.3    Zody, M.C.4    Mullikin, J.C.5
  • 19
    • 80052851950 scopus 로고    scopus 로고
    • Mouse genomic variation and its effect on phenotypes and gene regulation
    • Keane TM, Goodstadt L, Danecek P, White MA, Wong K, et al. (2011) Mouse genomic variation and its effect on phenotypes and gene regulation. Nature 477: 289-294.
    • (2011) Nature , vol.477 , pp. 289-294
    • Keane, T.M.1    Goodstadt, L.2    Danecek, P.3    White, M.A.4    Wong, K.5
  • 20
    • 33746068703 scopus 로고    scopus 로고
    • Genetic control of X chromosome inactivation in mice: Definition of the xce candidate interval
    • Chadwick LH, Pertz LM, Broman KW, Bartolomei MS, Willard HF (2006) Genetic control of X chromosome inactivation in mice: definition of the Xce candidate interval. Genetics 173: 2103-2110.
    • (2006) Genetics , vol.173 , pp. 2103-2110
    • Chadwick, L.H.1    Pertz, L.M.2    Broman, K.W.3    Bartolomei, M.S.4    Willard, H.F.5
  • 21
    • 79751531332 scopus 로고    scopus 로고
    • Haplotype and isoform specific expression estimation using multi-mapping RNA-seq reads
    • Turro E, Su SY, Goncalves A, Coin LJ, Richardson S, et al. (2011) Haplotype and isoform specific expression estimation using multi-mapping RNA-seq reads. Genome Biol 12: R13.
    • (2011) Genome Biol , vol.12 , pp. R13
    • Turro, E.1    Su, S.Y.2    Goncalves, A.3    Coin, L.J.4    Richardson, S.5
  • 22
    • 70349910898 scopus 로고    scopus 로고
    • Effect of read-mapping biases on detecting allele-specific expression from RNA-sequencing data
    • Degner JF, Marioni JC, Pai AA, Pickrell JK, Nkadori E, et al. (2009) Effect of read-mapping biases on detecting allele-specific expression from RNA-sequencing data. Bioinformatics 25: 3207-3212.
    • (2009) Bioinformatics , vol.25 , pp. 3207-3212
    • Degner, J.F.1    Marioni, J.C.2    Pai, A.A.3    Pickrell, J.K.4    Nkadori, E.5
  • 23
    • 0035234557 scopus 로고    scopus 로고
    • Genomic imprinting: Parental influence on the genome
    • Reik W, Walter J (2001) Genomic imprinting: parental influence on the genome. Nat Rev Genet 2: 21-32.
    • (2001) Nat Rev Genet , vol.2 , pp. 21-32
    • Reik, W.1    Walter, J.2
  • 25
    • 84864689053 scopus 로고    scopus 로고
    • A survey of tissue-specific genomic imprinting in mammals
    • Prickett AR, Oakey RJ (2012) A survey of tissue-specific genomic imprinting in mammals. Mol Genet Genomics 287: 621-630.
    • (2012) Mol Genet Genomics , vol.287 , pp. 621-630
    • Prickett, A.R.1    Oakey, R.J.2
  • 26
    • 84898758414 scopus 로고    scopus 로고
    • Genome-wide parent-of-origin DNA methylation analysis reveals the intricacies of human imprinting and suggests a germline methylation-independent mechanism of establishment
    • Court F, Tayama C, Romanelli V, Martin-Trujillo A, Iglesias-Platas I, et al. (2014) Genome-wide parent-of-origin DNA methylation analysis reveals the intricacies of human imprinting and suggests a germline methylation-independent mechanism of establishment. Genome Res.
    • (2014) Genome Res.
    • Court, F.1    Tayama, C.2    Romanelli, V.3    Martin-Trujillo, A.4    Iglesias-Platas, I.5
  • 27
    • 84857331867 scopus 로고    scopus 로고
    • Base-resolution analyses of sequence and parent-of-origin dependent DNA methylation in the mouse genome
    • Xie W, Barr CL, Kim A, Yue F, Lee AY, et al. (2012) Base-resolution analyses of sequence and parent-of-origin dependent DNA methylation in the mouse genome. Cell 148: 816-831.
    • (2012) Cell , vol.148 , pp. 816-831
    • Xie, W.1    Barr, C.L.2    Kim, A.3    Yue, F.4    Lee, A.Y.5
  • 28
    • 84892702660 scopus 로고    scopus 로고
    • Flexible analysis of RNA-seq data using mixed effects models
    • Turro E, Astle WJ, Tavare S (2014) Flexible analysis of RNA-seq data using mixed effects models. Bioinformatics 30: 180-188.
    • (2014) Bioinformatics , vol.30 , pp. 180-188
    • Turro, E.1    Astle, W.J.2    Tavare, S.3
  • 29
    • 0025958320 scopus 로고
    • Genomic imprinting in mammalian development: A parental tug-of-war
    • Moore T, Haig D (1991) Genomic imprinting in mammalian development: a parental tug-of-war. Trends Genet 7: 45-49.
    • (1991) Trends Genet , vol.7 , pp. 45-49
    • Moore, T.1    Haig, D.2
  • 30
    • 0038407464 scopus 로고    scopus 로고
    • What good is genomic imprinting: The function of parent-specific gene expression
    • Wilkins JF, Haig D (2003) What good is genomic imprinting: the function of parent-specific gene expression. Nat Rev Genet 4: 359-368.
    • (2003) Nat Rev Genet , vol.4 , pp. 359-368
    • Wilkins, J.F.1    Haig, D.2
  • 32
    • 0038419811 scopus 로고    scopus 로고
    • Imprinted microRNA genes transcribed antisense to a reciprocally imprinted retrotransposon-like gene
    • Seitz H, Youngson N, Lin SP, Dalbert S, Paulsen M, et al. (2003) Imprinted microRNA genes transcribed antisense to a reciprocally imprinted retrotransposon-like gene. Nat Genet 34: 261-262.
    • (2003) Nat Genet , vol.34 , pp. 261-262
    • Seitz, H.1    Youngson, N.2    Lin, S.P.3    Dalbert, S.4    Paulsen, M.5
  • 33
    • 34547888298 scopus 로고    scopus 로고
    • Mice with a disruption of the imprinted grb10 gene exhibit altered body composition, glucose homeostasis, and insulin signaling during postnatal life
    • Smith FM, Holt LJ, Garfield AS, Charalambous M, Koumanov F, et al. (2007) Mice with a disruption of the imprinted Grb10 gene exhibit altered body composition, glucose homeostasis, and insulin signaling during postnatal life. Mol Cell Biol 27: 5871-5886.
    • (2007) Mol Cell Biol , vol.27 , pp. 5871-5886
    • Smith, F.M.1    Holt, L.J.2    Garfield, A.S.3    Charalambous, M.4    Koumanov, F.5
  • 34
    • 79251578041 scopus 로고    scopus 로고
    • Distinct physiological and behavioural functions for parental alleles of imprinted grb10
    • Garfield AS, Cowley M, Smith FM, Moorwood K, Stewart-Cox JE, et al. (2011) Distinct physiological and behavioural functions for parental alleles of imprinted Grb10. Nature 469: 534-538.
    • (2011) Nature , vol.469 , pp. 534-538
    • Garfield, A.S.1    Cowley, M.2    Smith, F.M.3    Moorwood, K.4    Stewart-Cox, J.E.5
  • 35
    • 53549128365 scopus 로고    scopus 로고
    • A mono-allelic bivalent chromatin domain controls tissue-specific imprinting at grb10
    • Sanz LA, Chamberlain S, Sabourin JC, Henckel A, Magnuson T, et al. (2008) A mono-allelic bivalent chromatin domain controls tissue-specific imprinting at Grb10. EMBO J 27: 2523-2532.
    • (2008) EMBO J , vol.27 , pp. 2523-2532
    • Sanz, L.A.1    Chamberlain, S.2    Sabourin, J.C.3    Henckel, A.4    Magnuson, T.5
  • 36
    • 3042584653 scopus 로고    scopus 로고
    • Essential role for de novo DNA methyltransferase dnmt3a in paternal and maternal imprinting
    • Kaneda M, Okano M, Hata K, Sado T, Tsujimoto N, et al. (2004) Essential role for de novo DNA methyltransferase Dnmt3a in paternal and maternal imprinting. Nature 429: 900-903.
    • (2004) Nature , vol.429 , pp. 900-903
    • Kaneda, M.1    Okano, M.2    Hata, K.3    Sado, T.4    Tsujimoto, N.5
  • 37
    • 79956264664 scopus 로고    scopus 로고
    • Distinct nuclear localization patterns of DNA methyltransferases in developing and mature mammalian retina
    • Nasonkin IO, Lazo K, Hambright D, Brooks M, Fariss R, et al. (2011) Distinct nuclear localization patterns of DNA methyltransferases in developing and mature mammalian retina. J Comp Neurol 519: 1914-1930.
    • (2011) J Comp Neurol , vol.519 , pp. 1914-1930
    • Nasonkin, I.O.1    Lazo, K.2    Hambright, D.3    Brooks, M.4    Fariss, R.5
  • 38
    • 84892752841 scopus 로고    scopus 로고
    • The architecture of parent-of-origin effects in mice
    • Mott R, Yuan W, Kaisaki P, Gan X, Cleak J, et al. (2014) The architecture of parent-of-origin effects in mice. Cell 156: 332-342.
    • (2014) Cell , vol.156 , pp. 332-342
    • Mott, R.1    Yuan, W.2    Kaisaki, P.3    Gan, X.4    Cleak, J.5
  • 39
    • 77958471357 scopus 로고    scopus 로고
    • Differential expression analysis for sequence count data
    • Anders S, Huber W (2010) Differential expression analysis for sequence count data. Genome Biol 11: R106.
    • (2010) Genome Biol , vol.11 , pp. R106
    • Anders, S.1    Huber, W.2
  • 40
    • 0032749223 scopus 로고    scopus 로고
    • Retinopathy and attenuated circadian entrainment in crx-deficient mice
    • Furukawa T, Morrow EM, Li T, Davis FC, Cepko CL (1999) Retinopathy and attenuated circadian entrainment in Crx-deficient mice. Nat Genet 23: 466-470.
    • (1999) Nat Genet , vol.23 , pp. 466-470
    • Furukawa, T.1    Morrow, E.M.2    Li, T.3    Davis, F.C.4    Cepko, C.L.5
  • 41
    • 0030781996 scopus 로고    scopus 로고
    • Crx, a novel otx-like paired-homeodomain protein, binds to and transactivates photoreceptor cell-specific genes
    • Chen S, Wang QL, Nie Z, Sun H, Lennon G, et al. (1997) Crx, a novel Otx-like paired-homeodomain protein, binds to and transactivates photoreceptor cell-specific genes. Neuron 19: 1017-1030.
    • (1997) Neuron , vol.19 , pp. 1017-1030
    • Chen, S.1    Wang, Q.L.2    Nie, Z.3    Sun, H.4    Lennon, G.5
  • 42
    • 77956393798 scopus 로고    scopus 로고
    • Nonsense mutations in FAM161A cause RP28-associated recessive retinitis pigmentosa
    • Langmann T, Di Gioia SA, Rau I, Stohr H, Maksimovic NS, et al. (2010) Nonsense mutations in FAM161A cause RP28-associated recessive retinitis pigmentosa. Am J Hum Genet 87: 376-381.
    • (2010) Am J Hum Genet , vol.87 , pp. 376-381
    • Langmann, T.1    Di Gioia, S.A.2    Rau, I.3    Stohr, H.4    Maksimovic, N.S.5
  • 43
    • 80051608305 scopus 로고    scopus 로고
    • Exome sequencing and cis-regulatory mapping identify mutations in MAK, a gene encoding a regulator of ciliary length, as a cause of retinitis pigmentosa
    • Ozgul RK, Siemiatkowska AM, Yucel D, Myers CA, Collin RW, et al. (2011) Exome sequencing and cis-regulatory mapping identify mutations in MAK, a gene encoding a regulator of ciliary length, as a cause of retinitis pigmentosa. Am J Hum Genet 89: 253-264.
    • (2011) Am J Hum Genet , vol.89 , pp. 253-264
    • Ozgul, R.K.1    Siemiatkowska, A.M.2    Yucel, D.3    Myers, C.A.4    Collin, R.W.5
  • 44
    • 0032212151 scopus 로고    scopus 로고
    • The major cell populations of the mouse retina
    • Jeon CJ, Strettoi E, Masland RH (1998) The major cell populations of the mouse retina. J Neurosci 18: 8936-8946.
    • (1998) J Neurosci , vol.18 , pp. 8936-8946
    • Jeon, C.J.1    Strettoi, E.2    Masland, R.H.3
  • 46
    • 48649108204 scopus 로고    scopus 로고
    • Rod differentiation factor NRL activates the expression of nuclear receptor NR2E3 to suppress the development of cone photoreceptors
    • Oh EC, Cheng H, Hao H, Jia L, Khan NW, et al. (2008) Rod differentiation factor NRL activates the expression of nuclear receptor NR2E3 to suppress the development of cone photoreceptors. Brain Res 1236: 16-29.
    • (2008) Brain Res , vol.1236 , pp. 16-29
    • Oh, E.C.1    Cheng, H.2    Hao, H.3    Jia, L.4    Khan, N.W.5
  • 47
    • 0030669568 scopus 로고    scopus 로고
    • Cone-rod dystrophy due to mutations in a novel photoreceptor-specific homeobox gene (CRX) essential for maintenance of the photoreceptor
    • Freund CL, Gregory-Evans CY, Furukawa T, Papaioannou M, Looser J, et al. (1997) Cone-rod dystrophy due to mutations in a novel photoreceptor-specific homeobox gene (CRX) essential for maintenance of the photoreceptor. Cell 91: 543-553.
    • (1997) Cell , vol.91 , pp. 543-553
    • Freund, C.L.1    Gregory-Evans, C.Y.2    Furukawa, T.3    Papaioannou, M.4    Looser, J.5
  • 48
    • 23744458086 scopus 로고    scopus 로고
    • Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes
    • Siepel A, Bejerano G, Pedersen JS, Hinrichs AS, Hou M, et al. (2005) Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes. Genome Res 15: 1034-1050.
    • (2005) Genome Res , vol.15 , pp. 1034-1050
    • Siepel, A.1    Bejerano, G.2    Pedersen, J.S.3    Hinrichs, A.S.4    Hou, M.5
  • 49
    • 84880362638 scopus 로고    scopus 로고
    • Massively parallel in vivo enhancer assay reveals that highly local features determine the cis-regulatory function of ChIP-seq peaks
    • White MA, Myers CA, Corbo JC, Cohen BA (2013) Massively parallel in vivo enhancer assay reveals that highly local features determine the cis-regulatory function of ChIP-seq peaks. Proc Natl Acad Sci U S A 110: 11952-11957.
    • (2013) Proc Natl Acad Sci USA , vol.110 , pp. 11952-11957
    • White, M.A.1    Myers, C.A.2    Corbo, J.C.3    Cohen, B.A.4
  • 50
    • 65349099931 scopus 로고    scopus 로고
    • Thirty years of mus spretus: A promising future
    • Dejager L, Libert C, Montagutelli X (2009) Thirty years of Mus spretus: a promising future. Trends Genet 25: 234-241.
    • (2009) Trends Genet , vol.25 , pp. 234-241
    • Dejager, L.1    Libert, C.2    Montagutelli, X.3
  • 51
    • 84908571636 scopus 로고    scopus 로고
    • Available
    • RetNet. Available: http://www.sph.uth.tmc.edu/RetNet/
    • RetNet
  • 52
    • 78650937357 scopus 로고    scopus 로고
    • Arrestin-1 expression level in rods: Balancing functional performance and photoreceptor health
    • Song X, Vishnivetskiy SA, Seo J, Chen J, Gurevich EV, et al. (2011) Arrestin-1 expression level in rods: balancing functional performance and photoreceptor health. Neuroscience 174: 37-49.
    • (2011) Neuroscience , vol.174 , pp. 37-49
    • Song, X.1    Vishnivetskiy, S.A.2    Seo, J.3    Chen, J.4    Gurevich, E.V.5
  • 53
    • 0030842611 scopus 로고    scopus 로고
    • Prolonged photoresponses in transgenic mouse rods lacking arrestin
    • Xu J, Dodd RL, Makino CL, Simon MI, Baylor DA, et al. (1997) Prolonged photoresponses in transgenic mouse rods lacking arrestin. Nature 389: 505-509.
    • (1997) Nature , vol.389 , pp. 505-509
    • Xu, J.1    Dodd, R.L.2    Makino, C.L.3    Simon, M.I.4    Baylor, D.A.5
  • 54
    • 0029067542 scopus 로고
    • A homozygous 1-base pair deletion in the arrestin gene is a frequent cause of oguchi disease in Japanese
    • Fuchs S, Nakazawa M, Maw M, Tamai M, Oguchi Y, et al. (1995) A homozygous 1-base pair deletion in the arrestin gene is a frequent cause of Oguchi disease in Japanese. Nat Genet 10: 360-362.
    • (1995) Nat Genet , vol.10 , pp. 360-362
    • Fuchs, S.1    Nakazawa, M.2    Maw, M.3    Tamai, M.4    Oguchi, Y.5
  • 55
    • 84873043627 scopus 로고    scopus 로고
    • Quantifying the activity of cis-regulatory elements in the mouse retina by explant electroporation
    • Montana CL, Myers CA, Corbo JC (2011) Quantifying the activity of cis-regulatory elements in the mouse retina by explant electroporation. J Vis Exp.
    • (2011) J Vis Exp.
    • Montana, C.L.1    Myers, C.A.2    Corbo, J.C.3
  • 56
    • 84896713460 scopus 로고    scopus 로고
    • Subtle changes in motif positioning cause tissue-specific effects on robustness of an enhancer's activity
    • Erceg J, Saunders TE, Girardot C, Devos DP, Hufnagel L, et al. (2014) Subtle changes in motif positioning cause tissue-specific effects on robustness of an enhancer's activity. PLoS Genet 10: e1004060.
    • (2014) PLoS Genet , vol.10 , pp. e1004060
    • Erceg, J.1    Saunders, T.E.2    Girardot, C.3    Devos, D.P.4    Hufnagel, L.5
  • 57
    • 84975795680 scopus 로고    scopus 로고
    • An integrated map of genetic variation from 1,092 human genomes
    • Genomes Project Consortium (2012) An integrated map of genetic variation from 1,092 human genomes. Nature 491: 56-65.
    • (2012) Nature , vol.491 , pp. 56-65
    • Genomes Project Consortium1
  • 58
    • 84865777825 scopus 로고    scopus 로고
    • Linking disease associations with regulatory information in the human genome
    • Schaub MA, Boyle AP, Kundaje A, Batzoglou S, Snyder M (2012) Linking disease associations with regulatory information in the human genome. Genome Res 22: 1748-1759.
    • (2012) Genome Res , vol.22 , pp. 1748-1759
    • Schaub, M.A.1    Boyle, A.P.2    Kundaje, A.3    Batzoglou, S.4    Snyder, M.5
  • 59
    • 27444437192 scopus 로고    scopus 로고
    • Mouse mutants as models for congenital retinal disorders
    • Dalke C, Graw J (2005) Mouse mutants as models for congenital retinal disorders. Exp Eye Res 81: 503-512.
    • (2005) Exp Eye Res , vol.81 , pp. 503-512
    • Dalke, C.1    Graw, J.2
  • 60
    • 84878497307 scopus 로고    scopus 로고
    • Global properties and functional complexity of human gene regulatory variation
    • Gaffney DJ (2013) Global properties and functional complexity of human gene regulatory variation. PLoS Genet 9: e1003501.
    • (2013) PLoS Genet , vol.9 , pp. e1003501
    • Gaffney, D.J.1
  • 61
    • 79952256739 scopus 로고    scopus 로고
    • The architecture of gene regulatory variation across multiple human tissues: The MuTHER study
    • Nica AC, Parts L, Glass D, Nisbet J, Barrett A, et al. (2011) The architecture of gene regulatory variation across multiple human tissues: the MuTHER study. PLoS Genet 7: e1002003.
    • (2011) PLoS Genet , vol.7 , pp. e1002003
    • Nica, A.C.1    Parts, L.2    Glass, D.3    Nisbet, J.4    Barrett, A.5
  • 62
  • 63
    • 0141920354 scopus 로고    scopus 로고
    • Comparing protein abundance and mRNA expression levels on a genomic scale
    • Greenbaum D, Colangelo C, Williams K, Gerstein M (2003) Comparing protein abundance and mRNA expression levels on a genomic scale. Genome Biol 4: 117.
    • (2003) Genome Biol , vol.4 , pp. 117
    • Greenbaum, D.1    Colangelo, C.2    Williams, K.3    Gerstein, M.4
  • 64
    • 84895525650 scopus 로고    scopus 로고
    • Ribosome profiling reveals post-transcriptional buffering of divergent gene expression in yeast
    • McManus CJ, May GE, Spealman P, Shteyman A (2014) Ribosome profiling reveals post-transcriptional buffering of divergent gene expression in yeast. Genome Res 24: 422-430.
    • (2014) Genome Res , vol.24 , pp. 422-430
    • McManus, C.J.1    May, G.E.2    Spealman, P.3    Shteyman, A.4
  • 66
    • 84899450857 scopus 로고    scopus 로고
    • Transcriptional enhancers: From properties to genome-wide predictions
    • Shlyueva D, Stampfel G, Stark A (2014) Transcriptional enhancers: from properties to genome-wide predictions. Nat Rev Genet 15: 272-286.
    • (2014) Nat Rev Genet , vol.15 , pp. 272-286
    • Shlyueva, D.1    Stampfel, G.2    Stark, A.3
  • 67
    • 34547939468 scopus 로고    scopus 로고
    • Intrinsic circadian clock of the mammalian retina: Importance for retinal processing of visual information
    • Storch KF, Paz C, Signorovitch J, Raviola E, Pawlyk B, et al. (2007) Intrinsic circadian clock of the mammalian retina: importance for retinal processing of visual information. Cell 130: 730-741.
    • (2007) Cell , vol.130 , pp. 730-741
    • Storch, K.F.1    Paz, C.2    Signorovitch, J.3    Raviola, E.4    Pawlyk, B.5
  • 68
    • 84871741936 scopus 로고    scopus 로고
    • Available
    • Krueger F. Trim Galore! Available: http://www.bioinformatics.babraham.ac.uk/projects/trim-galore/
    • Trim Galore!
    • Krueger, F.1
  • 69
    • 62349130698 scopus 로고    scopus 로고
    • Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
    • Langmead B, Trapnell C, Pop M, Salzberg SL (2009) Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol 10: R25.
    • (2009) Genome Biol , vol.10 , pp. R25
    • Langmead, B.1    Trapnell, C.2    Pop, M.3    Salzberg, S.L.4
  • 70
    • 47149114764 scopus 로고    scopus 로고
    • WAMIDEX: A web atlas of murine genomic imprinting and differential expression
    • Schulz R, Woodfine K, Menheniott TR, Bourc'his D, Bestor T, et al. (2008) WAMIDEX: a web atlas of murine genomic imprinting and differential expression. Epigenetics 3: 89-96.
    • (2008) Epigenetics , vol.3 , pp. 89-96
    • Schulz, R.1    Woodfine, K.2    Menheniott, T.R.3    Bourc'his, D.4    Bestor, T.5
  • 72
    • 84908600641 scopus 로고    scopus 로고
    • Available
    • Jirtle RL (2012) Geneimprint. Available: http://www.geneimprint.com/.
    • (2012)
    • Jirtle, R.L.1
  • 73
    • 0035171016 scopus 로고    scopus 로고
    • The imprinted gene and parent-of-origin effect database
    • Morison IM, Paton CJ, Cleverley SD (2001) The imprinted gene and parent-of-origin effect database. Nucleic Acids Res 29: 275-276.
    • (2001) Nucleic Acids Res , vol.29 , pp. 275-276
    • Morison, I.M.1    Paton, C.J.2    Cleverley, S.D.3
  • 75
    • 77951770756 scopus 로고    scopus 로고
    • BEDTools: A flexible suite of utilities for comparing genomic features
    • Quinlan AR, Hall IM (2010) BEDTools: a flexible suite of utilities for comparing genomic features. Bioinformatics 26: 841-842.
    • (2010) Bioinformatics , vol.26 , pp. 841-842
    • Quinlan, A.R.1    Hall, I.M.2
  • 76
    • 84891788593 scopus 로고    scopus 로고
    • The mouse genome database: Integration of and access to knowledge about the laboratory mouse
    • Blake JA, Bult CJ, Eppig JT, Kadin JA, Richardson JE, et al. (2014) The Mouse Genome Database: integration of and access to knowledge about the laboratory mouse. Nucleic Acids Res 42: D810-817.
    • (2014) Nucleic Acids Res , vol.42 , pp. D810-817
    • Blake, J.A.1    Bult, C.J.2    Eppig, J.T.3    Kadin, J.A.4    Richardson, J.E.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.