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Volumn 54, Issue 10, 2014, Pages 2816-2825

Identification of a Novel Inhibitor of Dengue Virus Protease through Use of a Virtual Screening Drug Discovery Web Portal

Author keywords

[No Author keywords available]

Indexed keywords

DIGITAL LIBRARIES; HYDROGEN BONDS; MOLECULES; SUPERCOMPUTERS; VIRUSES;

EID: 84908260036     PISSN: 15499596     EISSN: 1549960X     Source Type: Journal    
DOI: 10.1021/ci500531r     Document Type: Article
Times cited : (48)

References (51)
  • 1
    • 0141676629 scopus 로고    scopus 로고
    • The Process of Structure-Based Drug Design
    • Anderson, A. C. The Process of Structure-Based Drug Design Chem. Biol. 2003, 10, 787-797
    • (2003) Chem. Biol. , vol.10 , pp. 787-797
    • Anderson, A.C.1
  • 2
    • 0027942499 scopus 로고
    • Software for Structure-Based Drug Design
    • Guida, W. C. Software for Structure-Based Drug Design Curr. Opin. Struct. Biol. 1994, 4, 777-781
    • (1994) Curr. Opin. Struct. Biol. , vol.4 , pp. 777-781
    • Guida, W.C.1
  • 4
    • 0028773887 scopus 로고
    • Structure-Based Drug Design: Progress, Results and Challenges
    • Verlinde, C. L.; Hol, W. G. Structure-Based Drug Design: Progress, Results and Challenges Structure 1994, 2, 577-587
    • (1994) Structure , vol.2 , pp. 577-587
    • Verlinde, C.L.1    Hol, W.G.2
  • 5
    • 8844263008 scopus 로고    scopus 로고
    • Docking and Scoring in Virtual Screening for Drug Discovery: Methods and Applications
    • Kitchen, D. B.; Decornez, H.; Furr, J. R.; Bajorath, J. Docking and Scoring in Virtual Screening for Drug Discovery: Methods and Applications Nat. Rev. Drug Discovery 2004, 3, 935-949
    • (2004) Nat. Rev. Drug Discovery , vol.3 , pp. 935-949
    • Kitchen, D.B.1    Decornez, H.2    Furr, J.R.3    Bajorath, J.4
  • 6
    • 0029902763 scopus 로고    scopus 로고
    • Computational Methods for Biomolecular Docking
    • Lengauer, T.; Rarey, M. Computational Methods for Biomolecular Docking Curr. Opin. Struct. Biol. 1996, 6, 402-406
    • (1996) Curr. Opin. Struct. Biol. , vol.6 , pp. 402-406
    • Lengauer, T.1    Rarey, M.2
  • 7
    • 40049105721 scopus 로고    scopus 로고
    • Essential Factors for Successful Virtual Screening
    • Seifert, M. H.; Lang, M. Essential Factors for Successful Virtual Screening Mini-Rev. Med. Chem. 2008, 8, 63-72
    • (2008) Mini-Rev. Med. Chem. , vol.8 , pp. 63-72
    • Seifert, M.H.1    Lang, M.2
  • 8
    • 76149120388 scopus 로고    scopus 로고
    • AutoDock Vina: Improving the Speed and Accuracy of Docking with a New Scoring Function, Efficient Optimization, and Multithreading
    • Trott, O.; Olson, A. J. AutoDock Vina: Improving the Speed and Accuracy of Docking with a New Scoring Function, Efficient Optimization, and Multithreading J. Comput. Chem. 2009, 31, 455-461
    • (2009) J. Comput. Chem. , vol.31 , pp. 455-461
    • Trott, O.1    Olson, A.J.2
  • 9
    • 2542530042 scopus 로고    scopus 로고
    • The PDBbind Database: Collection of Binding Affinities for Protein-Ligand Complexes with Known Three-Dimensional Structures
    • Wang, R.; Fang, X.; Lu, Y.; Wang, S. The PDBbind Database: Collection of Binding Affinities for Protein-Ligand Complexes with Known Three-Dimensional Structures J. Med. Chem. 2004, 47, 2977-2980
    • (2004) J. Med. Chem. , vol.47 , pp. 2977-2980
    • Wang, R.1    Fang, X.2    Lu, Y.3    Wang, S.4
  • 10
    • 20444422149 scopus 로고    scopus 로고
    • The PDBbind Database: Methodologies and Updates
    • Wang, R.; Fang, X.; Lu, Y.; Yang, C. Y.; Wang, S. The PDBbind Database: Methodologies and Updates J. Med. Chem. 2005, 48, 4111-4119
    • (2005) J. Med. Chem. , vol.48 , pp. 4111-4119
    • Wang, R.1    Fang, X.2    Lu, Y.3    Yang, C.Y.4    Wang, S.5
  • 15
    • 61449189645 scopus 로고    scopus 로고
    • Anti-HIV Drugs: 25 Compounds Approved within 25 Years after the Discovery of HIV
    • De Clercq, E. Anti-HIV Drugs: 25 Compounds Approved within 25 Years after the Discovery of HIV Int. J. Antimicrob. Agents 2009, 33, 307-320
    • (2009) Int. J. Antimicrob. Agents , vol.33 , pp. 307-320
    • De Clercq, E.1
  • 16
    • 33646446894 scopus 로고    scopus 로고
    • VX-950, a Novel Hepatitis C Virus (HCV) NS3-4A Protease Inhibitor, Exhibits Potent Antiviral Activities in HCV Replicon Cells
    • Lin, K.; Perni, R. B.; Kwong, A. D.; Lin, C. VX-950, a Novel Hepatitis C Virus (HCV) NS3-4A Protease Inhibitor, Exhibits Potent Antiviral Activities in HCV Replicon Cells Antimicrob. Agents Chemother. 2006, 50, 1813-1822
    • (2006) Antimicrob. Agents Chemother. , vol.50 , pp. 1813-1822
    • Lin, K.1    Perni, R.B.2    Kwong, A.D.3    Lin, C.4
  • 18
    • 77954371199 scopus 로고    scopus 로고
    • NS3 Protease from Flavivirus as a Target for Designing Antiviral Inhibitors against Dengue Virus
    • Natarajan, S. NS3 Protease from Flavivirus as a Target for Designing Antiviral Inhibitors against Dengue Virus Genet. Mol. Biol. 2010, 33, 214-219
    • (2010) Genet. Mol. Biol. , vol.33 , pp. 214-219
    • Natarajan, S.1
  • 21
    • 79952268132 scopus 로고    scopus 로고
    • Design of New Competitive Dengue NS2b/NS3 Protease Inhibitors-A Computational Approach
    • Frimayanti, N.; Chee, C. F.; Zain, S. M.; Rahman, N. A. Design of New Competitive Dengue NS2b/NS3 Protease Inhibitors-A Computational Approach Int. J. Mol. Sci. 2011, 12, 1089-1100
    • (2011) Int. J. Mol. Sci. , vol.12 , pp. 1089-1100
    • Frimayanti, N.1    Chee, C.F.2    Zain, S.M.3    Rahman, N.A.4
  • 22
    • 84862806808 scopus 로고    scopus 로고
    • Identification of a Small-Molecule Inhibitor of Dengue Virus Using a Replicon System
    • Hsu, Y. C.; Chen, N. C.; Chen, P. C.; Wang, C. C.; Cheng, W. C.; Wu, H. N. Identification of a Small-Molecule Inhibitor of Dengue Virus Using a Replicon System Arch. Virol. 2012, 157, 681-688
    • (2012) Arch. Virol. , vol.157 , pp. 681-688
    • Hsu, Y.C.1    Chen, N.C.2    Chen, P.C.3    Wang, C.C.4    Cheng, W.C.5    Wu, H.N.6
  • 24
    • 84861180855 scopus 로고    scopus 로고
    • Development of a Robust Cytopathic Effect-Based High-Throughput Screening Assay to Identify Novel Inhibitors of Dengue Virus
    • McCormick, K. D.; Liu, S.; Jacobs, J. L.; Marques, E. T., Jr.; Sluis-Cremer, N.; Wang, T. Development of a Robust Cytopathic Effect-Based High-Throughput Screening Assay To Identify Novel Inhibitors of Dengue Virus Antimicrob. Agents Chemother. 2012, 56, 3399-3401
    • (2012) Antimicrob. Agents Chemother. , vol.56 , pp. 3399-3401
    • McCormick, K.D.1    Liu, S.2    Jacobs, J.L.3    Marques, E.T.4    Sluis-Cremer, N.5    Wang, T.6
  • 25
    • 78751620005 scopus 로고    scopus 로고
    • Anthracene-Based Inhibitors of Dengue Virus NS2B-NS3 Protease
    • Tomlinson, S. M.; Watowich, S. J. Anthracene-Based Inhibitors of Dengue Virus NS2B-NS3 Protease Antiviral Res. 2011, 89, 127-135
    • (2011) Antiviral Res. , vol.89 , pp. 127-135
    • Tomlinson, S.M.1    Watowich, S.J.2
  • 31
    • 84855921187 scopus 로고    scopus 로고
    • Ligand-Bound Structures of the Dengue Virus Protease Reveal the Active Conformation
    • Noble, C. G.; Seh, C. C.; Chao, A. T.; Shi, P. Y. Ligand-Bound Structures of the Dengue Virus Protease Reveal the Active Conformation J. Virol. 2012, 86, 438-446
    • (2012) J. Virol. , vol.86 , pp. 438-446
    • Noble, C.G.1    Seh, C.C.2    Chao, A.T.3    Shi, P.Y.4
  • 32
    • 0033397980 scopus 로고    scopus 로고
    • Python: A Programming Language for Software Integration and Development
    • Sanner, M. F. Python: A Programming Language for Software Integration and Development J. Mol. Graphics Modell. 1999, 17, 57-61
    • (1999) J. Mol. Graphics Modell. , vol.17 , pp. 57-61
    • Sanner, M.F.1
  • 33
    • 13844312649 scopus 로고    scopus 로고
    • ZINC-A Free Database of Commercially Available Compounds for Virtual Screening
    • Irwin, J. J.; Shoichet, B. K. ZINC-A Free Database of Commercially Available Compounds for Virtual Screening J. Chem. Inf. Model. 2005, 45, 177-182
    • (2005) J. Chem. Inf. Model. , vol.45 , pp. 177-182
    • Irwin, J.J.1    Shoichet, B.K.2
  • 34
    • 84856093723 scopus 로고    scopus 로고
    • Use of Parallel Validation High-Throughput Screens to Reduce False Positives and Identify Novel Dengue NS2B-NS3 Protease Inhibitors
    • Tomlinson, S. M.; Watowich, S. J. Use of Parallel Validation High-Throughput Screens To Reduce False Positives and Identify Novel Dengue NS2B-NS3 Protease Inhibitors Antiviral Res. 2012, 93, 245-252
    • (2012) Antiviral Res. , vol.93 , pp. 245-252
    • Tomlinson, S.M.1    Watowich, S.J.2
  • 35
    • 55849123292 scopus 로고    scopus 로고
    • Substrate Inhibition Kinetic Model for West Nile Virus NS2B-NS3 Protease
    • Tomlinson, S. M.; Watowich, S. J. Substrate Inhibition Kinetic Model for West Nile Virus NS2B-NS3 Protease Biochemistry 2008, 47, 11763-11770
    • (2008) Biochemistry , vol.47 , pp. 11763-11770
    • Tomlinson, S.M.1    Watowich, S.J.2
  • 36
    • 0029902679 scopus 로고    scopus 로고
    • Program DynaFit for the Analysis of Enzyme Kinetic Data: Application to HIV Proteinase
    • Kuzmic, P. Program DynaFit for the Analysis of Enzyme Kinetic Data: Application to HIV Proteinase Anal. Biochem. 1996, 237, 260-273
    • (1996) Anal. Biochem. , vol.237 , pp. 260-273
    • Kuzmic, P.1
  • 37
    • 71549142265 scopus 로고    scopus 로고
    • DynaFit-A Software Package for Enzymology
    • Kuzmic, P. DynaFit-A Software Package for Enzymology Methods Enzymol. 2009, 467, 247-280
    • (2009) Methods Enzymol. , vol.467 , pp. 247-280
    • Kuzmic, P.1
  • 38
    • 1642505558 scopus 로고    scopus 로고
    • Practical Robust Fit of Enzyme Inhibition Data
    • Kuzmic, P.; Hill, C.; Janc, J. W. Practical Robust Fit of Enzyme Inhibition Data Methods Enzymol. 2004, 383, 366-381
    • (2004) Methods Enzymol. , vol.383 , pp. 366-381
    • Kuzmic, P.1    Hill, C.2    Janc, J.W.3
  • 39
    • 80051545693 scopus 로고    scopus 로고
    • IScreen: Worlds First Cloud-Computing Web Server for Virtual Screening and de Novo Drug Design Based on TCM Database@Taiwan
    • Tsai, T. Y.; Chang, K. W.; Chen, C. Y. iScreen: Worlds First Cloud-Computing Web Server for Virtual Screening and de Novo Drug Design Based on TCM Database@Taiwan J. Comput.-Aided Mol. Des. 2011, 25, 525-531
    • (2011) J. Comput.-Aided Mol. Des. , vol.25 , pp. 525-531
    • Tsai, T.Y.1    Chang, K.W.2    Chen, C.Y.3
  • 41
    • 74549156902 scopus 로고    scopus 로고
    • NMR Analysis of the Dynamic Exchange of the NS2B Cofactor between Open and Closed Conformations of the West Nile Virus NS2B-NS3 Protease
    • e561
    • Su, X. C.; Ozawa, K.; Qi, R.; Vasudevan, S. G.; Lim, S. P.; Otting, G. NMR Analysis of the Dynamic Exchange of the NS2B Cofactor between Open and Closed Conformations of the West Nile Virus NS2B-NS3 Protease PLoS Neglected Trop. Dis. 2009, 3 e561
    • (2009) PLoS Neglected Trop. Dis. , vol.3
    • Su, X.C.1    Ozawa, K.2    Qi, R.3    Vasudevan, S.G.4    Lim, S.P.5    Otting, G.6
  • 42
    • 71549171706 scopus 로고    scopus 로고
    • Fitting Enzyme Kinetic Data with KinTek Global Kinetic Explorer
    • Johnson, K. A. Fitting Enzyme Kinetic Data with KinTek Global Kinetic Explorer Methods Enzymol. 2009, 467, 601-626
    • (2009) Methods Enzymol. , vol.467 , pp. 601-626
    • Johnson, K.A.1
  • 43
    • 0032586721 scopus 로고    scopus 로고
    • i in a Competitive Enzyme-Inhibition Model: Comparisons among Three Methods of Data Analysis
    • i in a Competitive Enzyme-Inhibition Model: Comparisons among Three Methods of Data Analysis Drug Metab. Dispos. 1999, 27, 756-762
    • (1999) Drug Metab. Dispos. , vol.27 , pp. 756-762
    • Kakkar, T.1    Boxenbaum, H.2    Mayersohn, M.3
  • 44
    • 0000292524 scopus 로고
    • A Note on the Kinetics of Enzyme Action
    • Briggs, G. E.; Haldane, J. B. S. A Note on the Kinetics of Enzyme Action Biochem. J. 1925, 19, 338-339
    • (1925) Biochem. J. , vol.19 , pp. 338-339
    • Briggs, G.E.1    Haldane, J.B.S.2
  • 45
    • 33751330608 scopus 로고
    • The Determination of Enzyme Dissociation Constants
    • Lineweaver, H.; Burk, D. The Determination of Enzyme Dissociation Constants J. Am. Chem. Soc. 1934, 56, 658-666
    • (1934) J. Am. Chem. Soc. , vol.56 , pp. 658-666
    • Lineweaver, H.1    Burk, D.2
  • 46
    • 0000870544 scopus 로고
    • Die Kinetik der Invertinwirkung
    • Michaelis, L.; Menten, M. L. Die Kinetik der Invertinwirkung Biochem. Z. 1913, 49, 333-369
    • (1913) Biochem. Z. , vol.49 , pp. 333-369
    • Michaelis, L.1    Menten, M.L.2
  • 47
    • 80053394442 scopus 로고    scopus 로고
    • The Original Michaelis Constant: Translation of the 1913 Michaelis-Menten Paper
    • Michaelis, L.; Menten, M. L.; Johnson, K. A.; Goody, R. S. The Original Michaelis Constant: Translation of the 1913 Michaelis-Menten Paper Biochemistry 2011, 50, 8264-8269
    • (2011) Biochemistry , vol.50 , pp. 8264-8269
    • Michaelis, L.1    Menten, M.L.2    Johnson, K.A.3    Goody, R.S.4
  • 48
    • 0031473847 scopus 로고    scopus 로고
    • SWISS-MODEL and the Swiss-PDBViewer: An Environment for Comparative Protein Modeling
    • Guex, N.; Peitsch, M. C. SWISS-MODEL and the Swiss-PDBViewer: An Environment for Comparative Protein Modeling Electrophoresis 1997, 18, 2714-2723
    • (1997) Electrophoresis , vol.18 , pp. 2714-2723
    • Guex, N.1    Peitsch, M.C.2
  • 49
    • 79955574923 scopus 로고    scopus 로고
    • version 1.5.0.4; Schrödinger, LLC: New York
    • The PyMOL Molecular Graphics System, version 1.5.0.4; Schrödinger, LLC: New York, 2010.
    • (2010) The PyMOL Molecular Graphics System
  • 50
    • 56449107474 scopus 로고    scopus 로고
    • BioVenn-A Web Application for the Comparison and Visualization of Biological Lists Using Area-Proportional Venn Diagrams
    • Hulsen, T.; de Vlieg, J.; Alkema, W. BioVenn-A Web Application for the Comparison and Visualization of Biological Lists Using Area-Proportional Venn Diagrams BMC Genomics 2008, 9, 488
    • (2008) BMC Genomics , vol.9 , pp. 488
    • Hulsen, T.1    De Vlieg, J.2    Alkema, W.3
  • 51
    • 80054911951 scopus 로고    scopus 로고
    • LigPlot+: Multiple Ligand-Protein Interaction Diagrams for Drug Discovery
    • Laskowski, R. A.; Swindells, M. B. LigPlot+: Multiple Ligand-Protein Interaction Diagrams for Drug Discovery J. Chem. Inf. Model. 2011, 51, 2778-2786
    • (2011) J. Chem. Inf. Model. , vol.51 , pp. 2778-2786
    • Laskowski, R.A.1    Swindells, M.B.2


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