-
1
-
-
34247625945
-
Structural evidence for regulation and specificity of flaviviral proteases and evolution of the Flaviviridae fold
-
Aleshin AE, Shiryaev SA, Strongin AY, Liddington RC. 2007. Structural evidence for regulation and specificity of flaviviral proteases and evolution of the Flaviviridae fold. Protein Sci. 16:795-806.
-
(2007)
Protein Sci
, vol.16
, pp. 795-806
-
-
Aleshin, A.E.1
Shiryaev, S.A.2
Strongin, A.Y.3
Liddington, R.C.4
-
2
-
-
72849147739
-
Crystal structure of a novel conformational state of the flavivirus NS3 protein: implications for polyprotein processing and viral replication
-
Assenberg R, et al. 2009. Crystal structure of a novel conformational state of the flavivirus NS3 protein: implications for polyprotein processing and viral replication. J. Virol. 83:12895-12906.
-
(2009)
J. Virol.
, vol.83
, pp. 12895-12906
-
-
Assenberg, R.1
-
3
-
-
33749529377
-
Application of high-throughput technologies to a structural proteomics-type analysis of Bacillus anthracis
-
Au K, et al. 2006. Application of high-throughput technologies to a structural proteomics-type analysis of Bacillus anthracis. Acta Crystallogr. D Biol. Crystallogr. 62:1267-1275.
-
(2006)
Acta Crystallogr. D Biol. Crystallogr.
, vol.62
, pp. 1267-1275
-
-
Au, K.1
-
4
-
-
79953759821
-
iMOSFLM: a new graphical interface for diffraction-image processing with MOSFLM
-
Battye TG, Kontogiannis L, Johnson O, Powell HR, Leslie AG. 2011. iMOSFLM: a new graphical interface for diffraction-image processing with MOSFLM. Acta Crystallogr. D Biol. Crystallogr. 67:271-281.
-
(2011)
Acta Crystallogr. D Biol. Crystallogr.
, vol.67
, pp. 271-281
-
-
Battye, T.G.1
Kontogiannis, L.2
Johnson, O.3
Powell, H.R.4
Leslie, A.G.5
-
5
-
-
70349782289
-
A fluorescence quenching assay to discriminate between specific and nonspecific inhibitors of dengue virus protease
-
Bodenreider C, et al. 2009. A fluorescence quenching assay to discriminate between specific and nonspecific inhibitors of dengue virus protease. Anal. Biochem. 395:195-204.
-
(2009)
Anal. Biochem.
, vol.395
, pp. 195-204
-
-
Bodenreider, C.1
-
6
-
-
0026540617
-
Cleavage of the dengue virus polyprotein at the NS3/NS4A and NS4B/NS5 junctions is mediated by viral protease NS2B-NS3, whereas NS4A/NS4B may be processed by a cellular protease
-
Cahour A, Falgout B, Lai CJ. 1992. Cleavage of the dengue virus polyprotein at the NS3/NS4A and NS4B/NS5 junctions is mediated by viral protease NS2B-NS3, whereas NS4A/NS4B may be processed by a cellular protease. J. Virol. 66:1535-1542.
-
(1992)
J. Virol.
, vol.66
, pp. 1535-1542
-
-
Cahour, A.1
Falgout, B.2
Lai, C.J.3
-
7
-
-
77649114480
-
Serotype-specific structural differences in the protease-cofactor complexes of the dengue virus family
-
Chandramouli S, et al. 2010. Serotype-specific structural differences in the protease-cofactor complexes of the dengue virus family. J. Virol. 84: 3059-3067.
-
(2010)
J. Virol.
, vol.84
, pp. 3059-3067
-
-
Chandramouli, S.1
-
8
-
-
33845976698
-
Insights to substrate binding and processing by West Nile Virus NS3 protease through combined modeling, protease mutagenesis, and kinetic studies
-
Chappell KJ, Stoermer MJ, Fairlie DP, Young PR. 2006. Insights to substrate binding and processing by West Nile Virus NS3 protease through combined modeling, protease mutagenesis, and kinetic studies. J. Biol. Chem. 281:38448-38458.
-
(2006)
J. Biol. Chem.
, vol.281
, pp. 38448-38458
-
-
Chappell, K.J.1
Stoermer, M.J.2
Fairlie, D.P.3
Young, P.R.4
-
9
-
-
33847168016
-
Generation and characterization of proteolytically active and highly stable truncated and full-length recombinant West Nile virus NS3
-
Chappell KJ, Stoermer MJ, Fairlie DP, Young PR. 2007. Generation and characterization of proteolytically active and highly stable truncated and full-length recombinant West Nile virus NS3. Protein Expr. Purif. 53: 87-96.
-
(2007)
Protein Expr. Purif.
, vol.53
, pp. 87-96
-
-
Chappell, K.J.1
Stoermer, M.J.2
Fairlie, D.P.3
Young, P.R.4
-
10
-
-
45549101510
-
Mutagenesis of the West Nile virus NS2B cofactor domain reveals two regions essential for protease activity
-
Chappell KJ, Stoermer MJ, Fairlie DP, Young PR. 2008. Mutagenesis of the West Nile virus NS2B cofactor domain reveals two regions essential for protease activity. J. Gen. Virol. 89:1010-1014.
-
(2008)
J. Gen. Virol.
, vol.89
, pp. 1010-1014
-
-
Chappell, K.J.1
Stoermer, M.J.2
Fairlie, D.P.3
Young, P.R.4
-
13
-
-
33745025763
-
Structural basis for the activation of flaviviral NS3 proteases from dengue and West Nile virus
-
Erbel P, et al. 2006. Structural basis for the activation of flaviviral NS3 proteases from dengue and West Nile virus. Nat. Struct. Mol. Biol. 13: 372-373.
-
(2006)
Nat. Struct. Mol. Biol.
, vol.13
, pp. 372-373
-
-
Erbel, P.1
-
14
-
-
79953747244
-
An introduction to data reduction: space-group determination, scaling and intensity statistics
-
Evans PR. 2011. An introduction to data reduction: space-group determination, scaling and intensity statistics. Acta Crystallogr. D Biol. Crystallogr. 67:282-292.
-
(2011)
Acta Crystallogr. D Biol. Crystallogr.
, vol.67
, pp. 282-292
-
-
Evans, P.R.1
-
15
-
-
0025864149
-
Both nonstructural proteins NS2B and NS3 are required for the proteolytic processing of dengue virus nonstructural proteins
-
Falgout B, Pethel M, Zhang YM, Lai CJ. 1991. Both nonstructural proteins NS2B and NS3 are required for the proteolytic processing of dengue virus nonstructural proteins. J. Virol. 65:2467-2475.
-
(1991)
J. Virol.
, vol.65
, pp. 2467-2475
-
-
Falgout, B.1
Pethel, M.2
Zhang, Y.M.3
Lai, C.J.4
-
16
-
-
79955602230
-
Dengue: a continuing global threat
-
Guzman MG, et al. 2010. Dengue: a continuing global threat. Nat. Rev. Microbiol. 8:S7-S16.
-
(2010)
Nat. Rev. Microbiol.
, vol.8
-
-
Guzman, M.G.1
-
17
-
-
79956034327
-
Structure-guided fragment-based in silico drug design of dengue protease inhibitors
-
Knehans T, et al. 2011. Structure-guided fragment-based in silico drug design of dengue protease inhibitors. J. Comput. Aided Mol. Des. 25: 263-274.
-
(2011)
J. Comput. Aided Mol. Des.
, vol.25
, pp. 263-274
-
-
Knehans, T.1
-
18
-
-
53249121029
-
Towards the design of antiviral inhibitors against flaviviruses: the case for the multifunctional NS3 protein from Dengue virus as a target
-
Lescar J, et al. 2008. Towards the design of antiviral inhibitors against flaviviruses: the case for the multifunctional NS3 protein from Dengue virus as a target. Antiviral Res. 80:94-101.
-
(2008)
Antiviral Res
, vol.80
, pp. 94-101
-
-
Lescar, J.1
-
19
-
-
23344446921
-
Functional profiling of recombinant NS3 proteases from all four serotypes of dengue virus using tetrapeptide and octapeptide substrate libraries
-
Li J, et al. 2005. Functional profiling of recombinant NS3 proteases from all four serotypes of dengue virus using tetrapeptide and octapeptide substrate libraries. J. Biol. Chem. 280:28766-28774.
-
(2005)
J. Biol. Chem.
, vol.280
, pp. 28766-28774
-
-
Li, J.1
-
20
-
-
37349023165
-
Crystal structure of the NS3 protease-helicase from dengue virus
-
Luo D, et al. 2008. Crystal structure of the NS3 protease-helicase from dengue virus. J. Virol. 82:173-183.
-
(2008)
J. Virol.
, vol.82
, pp. 173-183
-
-
Luo, D.1
-
22
-
-
79953763877
-
REFMAC5 for the refinement of macromolecular crystal structures
-
Murshudov GN, et al. 2011. REFMAC5 for the refinement of macromolecular crystal structures. Acta Crystallogr. D Biol. Crystallogr. 67: 355-367.
-
(2011)
Acta Crystallogr. D Biol. Crystallogr.
, vol.67
, pp. 355-367
-
-
Murshudov, G.N.1
-
23
-
-
10044278380
-
Identification of residues in the dengue virus type 2 NS2B cofactor that are critical for NS3 protease activation
-
Niyomrattanakit P, et al. 2004. Identification of residues in the dengue virus type 2 NS2B cofactor that are critical for NS3 protease activation. J. Virol. 78:13708-13716.
-
(2004)
J. Virol.
, vol.78
, pp. 13708-13716
-
-
Niyomrattanakit, P.1
-
24
-
-
33745516142
-
Probing the substrate specificity of the dengue virus type 2 NS3 serine protease by using internally quenched fluorescent peptides
-
Niyomrattanakit P, et al. 2006. Probing the substrate specificity of the dengue virus type 2 NS3 serine protease by using internally quenched fluorescent peptides. Biochem. J. 397:203-211.
-
(2006)
Biochem. J.
, vol.397
, pp. 203-211
-
-
Niyomrattanakit, P.1
-
25
-
-
58649113845
-
Structure of West Nile virus NS3 protease: ligand stabilization of the catalytic conformation
-
Robin G, et al. 2009. Structure of West Nile virus NS3 protease: ligand stabilization of the catalytic conformation. J. Mol. Biol. 385:1568-1577.
-
(2009)
J. Mol. Biol.
, vol.385
, pp. 1568-1577
-
-
Robin, G.1
-
26
-
-
77955802960
-
Structure-guided mutagenesis of active site residues in the dengue virus two-component protease NS2B-NS3
-
Salaemae W, Junaid M, Angsuthanasombat C, Katzenmeier G. 2010. Structure-guided mutagenesis of active site residues in the dengue virus two-component protease NS2B-NS3. J. Biomed. Sci. 17:68.
-
(2010)
J. Biomed. Sci.
, vol.17
, pp. 68
-
-
Salaemae, W.1
Junaid, M.2
Angsuthanasombat, C.3
Katzenmeier, G.4
-
27
-
-
80052859422
-
Tripeptide inhibitors of dengue and West Nile virus NS2B-NS3 protease
-
Schuller A, et al. 2011. Tripeptide inhibitors of dengue and West Nile virus NS2B-NS3 protease. Antiviral Res. 92:96-101.
-
(2011)
Antiviral Res
, vol.92
, pp. 96-101
-
-
Schuller, A.1
-
28
-
-
33846883704
-
Cleavage preference distinguishes the twocomponent NS2B-NS3 serine proteinases of Dengue and West Nile viruses
-
Shiryaev SA, et al. 2007. Cleavage preference distinguishes the twocomponent NS2B-NS3 serine proteinases of Dengue and West Nile viruses. Biochem. J. 401:743-752.
-
(2007)
Biochem. J.
, vol.401
, pp. 743-752
-
-
Shiryaev, S.A.1
-
29
-
-
34247607600
-
Switching the substrate specificity of the twocomponent NS2B-NS3 flavivirus proteinase by structure-based mutagenesis
-
Shiryaev SA, et al. 2007. Switching the substrate specificity of the twocomponent NS2B-NS3 flavivirus proteinase by structure-based mutagenesis. J. Virol. 81:4501-4509.
-
(2007)
J. Virol.
, vol.81
, pp. 4501-4509
-
-
Shiryaev, S.A.1
-
30
-
-
0030764780
-
Proteolytic activation of tick-borne encephalitis virus by furin
-
Stadler K, Allison SL, Schalich J, Heinz FX. 1997. Proteolytic activation of tick-borne encephalitis virus by furin. J. Virol. 71:8475-8481.
-
(1997)
J. Virol.
, vol.71
, pp. 8475-8481
-
-
Stadler, K.1
Allison, S.L.2
Schalich, J.3
Heinz, F.X.4
-
31
-
-
74549156902
-
NMR analysis of the dynamic exchange of the NS2B cofactor between open and closed conformations of the West Nile virus NS2B-NS3 protease
-
Su XC, et al. 2009. NMR analysis of the dynamic exchange of the NS2B cofactor between open and closed conformations of the West Nile virus NS2B-NS3 protease. PLoS Negl. Trop. Dis. 3:e561.
-
(2009)
PLoS Negl. Trop. Dis.
, vol.3
-
-
Su, X.C.1
-
32
-
-
77950675654
-
Homology modeling and molecular dynamics simulations of Dengue virus NS2B/NS3 protease: insight into molecular interaction
-
Wichapong K, Pianwanit S, Sippl W, Kokpol S. 2010. Homology modeling and molecular dynamics simulations of Dengue virus NS2B/NS3 protease: insight into molecular interaction. J. Mol. Recognit. 23:283-300.
-
(2010)
J. Mol. Recognit.
, vol.23
, pp. 283-300
-
-
Wichapong, K.1
Pianwanit, S.2
Sippl, W.3
Kokpol, S.4
-
33
-
-
79953737180
-
Overview of the CCP4 suite and current developments
-
Winn MD, et al. 2011. Overview of the CCP4 suite and current developments. Acta Crystallogr. D Biol. Crystallogr. 67:235-242.
-
(2011)
Acta Crystallogr. D Biol. Crystallogr.
, vol.67
, pp. 235-242
-
-
Winn, M.D.1
-
34
-
-
34250826547
-
Cell-free transcription/translation from PCRamplifiedDNAfor high-throughput NMR studies
-
Wu PSC, et al. 2007. Cell-free transcription/translation from PCRamplifiedDNAfor high-throughput NMR studies. Angew. Chem. Int. Ed. Engl. 46:3356-3358.
-
(2007)
Angew. Chem. Int. Ed. Engl.
, vol.46
, pp. 3356-3358
-
-
Wu, P.S.C.1
-
35
-
-
27744520272
-
Peptide inhibitors of dengue virus NS3 protease. Part 2: SAR study of tetrapeptide aldehyde inhibitors
-
Yin Z, et al. 2006. Peptide inhibitors of dengue virus NS3 protease. Part 2: SAR study of tetrapeptide aldehyde inhibitors. Bioorg. Med. Chem. Lett. 16:40-43.
-
(2006)
Bioorg. Med. Chem. Lett.
, vol.16
, pp. 40-43
-
-
Yin, Z.1
-
36
-
-
27744581672
-
Peptide inhibitors of Dengue virus NS3 protease. Part 1: Warhead
-
Yin Z, et al. 2006. Peptide inhibitors of Dengue virus NS3 protease. Part 1: Warhead. Bioorg. Med. Chem. Lett. 16:36-39.
-
(2006)
Bioorg. Med. Chem. Lett.
, vol.16
, pp. 36-39
-
-
Yin, Z.1
|