메뉴 건너뛰기




Volumn 15, Issue 1, 2014, Pages

Genomic comparison of 93 bacillus phages reveals 12 clusters, 14 singletons and remarkable diversity

Author keywords

Bacillus; Bacteriophage; Cluster; Phage

Indexed keywords

NUCLEOTIDE; PROTEOME; DEOXYRIBONUCLEASE; VIRUS PROTEIN;

EID: 84908059138     PISSN: None     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/1471-2164-15-855     Document Type: Article
Times cited : (40)

References (92)
  • 1
    • 0024475207 scopus 로고
    • High abundance of viruses found in aquatic environments
    • Bergh O, Borsheim KY, Bratbak G, Heldal M. High abundance of viruses found in aquatic environments. Nature 1989, 340(6233):467-468.
    • (1989) Nature , vol.340 , Issue.6233 , pp. 467-468
    • Bergh, O.1    Borsheim, K.Y.2    Bratbak, G.3    Heldal, M.4
  • 2
    • 0037059610 scopus 로고    scopus 로고
    • Phage genomics: small is beautiful
    • Brussow H, Hendrix RW. Phage genomics: small is beautiful. Cell 2002, 108(1):13-16.
    • (2002) Cell , vol.108 , Issue.1 , pp. 13-16
    • Brussow, H.1    Hendrix, R.W.2
  • 3
    • 22544460255 scopus 로고    scopus 로고
    • The viriosphere, diversity, and genetic exchange within phage communities
    • Hambly E, Suttle CA. The viriosphere, diversity, and genetic exchange within phage communities. Curr Opin Microbiol 2005, 8(4):444-450.
    • (2005) Curr Opin Microbiol , vol.8 , Issue.4 , pp. 444-450
    • Hambly, E.1    Suttle, C.A.2
  • 4
    • 0036726302 scopus 로고    scopus 로고
    • Estimation of biologically damaging UV levels in marine surface waters with DNA and viral dosimeters
    • Wilhelm SW, Jeffrey WH, Suttle CA, Mitchell DL. Estimation of biologically damaging UV levels in marine surface waters with DNA and viral dosimeters. Photochem Photobiol 2002, 76(3):268-273.
    • (2002) Photochem Photobiol , vol.76 , Issue.3 , pp. 268-273
    • Wilhelm, S.W.1    Jeffrey, W.H.2    Suttle, C.A.3    Mitchell, D.L.4
  • 5
    • 0034053843 scopus 로고    scopus 로고
    • Virioplankton: viruses in aquatic ecosystems
    • Wommack KE, Colwell RR. Virioplankton: viruses in aquatic ecosystems. Microbiol Mol Biol Rev 2000, 64(1):69-114.
    • (2000) Microbiol Mol Biol Rev , vol.64 , Issue.1 , pp. 69-114
    • Wommack, K.E.1    Colwell, R.R.2
  • 6
    • 84866938640 scopus 로고    scopus 로고
    • Bacteriophages for detection and control of bacterial pathogens in food and food-processing environment
    • Brovko LY, Anany H, Griffiths MW. Bacteriophages for detection and control of bacterial pathogens in food and food-processing environment. Adv Food Nutr Res 2012, 67:241-288.
    • (2012) Adv Food Nutr Res , vol.67 , pp. 241-288
    • Brovko, L.Y.1    Anany, H.2    Griffiths, M.W.3
  • 7
    • 84878321621 scopus 로고    scopus 로고
    • Phage cocktails and the future of phage therapy
    • Chan BK, Abedon ST, Loc-Carrillo C. Phage cocktails and the future of phage therapy. Future Microbiol 2013, 8(6):769-783.
    • (2013) Future Microbiol , vol.8 , Issue.6 , pp. 769-783
    • Chan, B.K.1    Abedon, S.T.2    Loc-Carrillo, C.3
  • 8
    • 84871155945 scopus 로고    scopus 로고
    • The use of phage display to generate conformation-sensor recombinant antibodies
    • Haque A, Tonks NK. The use of phage display to generate conformation-sensor recombinant antibodies. Nat Protoc 2012, 7(12):2127-2143.
    • (2012) Nat Protoc , vol.7 , Issue.12 , pp. 2127-2143
    • Haque, A.1    Tonks, N.K.2
  • 9
    • 84870725981 scopus 로고    scopus 로고
    • Tools from viruses: bacteriophage successes and beyond
    • Henry M, Debarbieux L. Tools from viruses: bacteriophage successes and beyond. Virology 2012, 434(2):151-161.
    • (2012) Virology , vol.434 , Issue.2 , pp. 151-161
    • Henry, M.1    Debarbieux, L.2
  • 10
    • 84862906340 scopus 로고    scopus 로고
    • Phage recombinases and their applications
    • Murphy KC. Phage recombinases and their applications. Adv Virus Res 2012, 83:367-414.
    • (2012) Adv Virus Res , vol.83 , pp. 367-414
    • Murphy, K.C.1
  • 11
    • 84903592358 scopus 로고    scopus 로고
    • Lytic bacteriophages: potential interventions against enteric bacterial pathogens on produce
    • Sharma M. Lytic bacteriophages: potential interventions against enteric bacterial pathogens on produce. Bacteriophage 2013, 3(2):e25518.
    • (2013) Bacteriophage , vol.3 , Issue.2 , pp. e25518
    • Sharma, M.1
  • 12
    • 84875153748 scopus 로고    scopus 로고
    • Recent advances in bacteriophage based biosensors for food-borne pathogen detection
    • Singh A, Poshtiban S, Evoy S. Recent advances in bacteriophage based biosensors for food-borne pathogen detection. Sensors (Basel) 2013, 13(2):1763-1786.
    • (2013) Sensors (Basel) , vol.13 , Issue.2 , pp. 1763-1786
    • Singh, A.1    Poshtiban, S.2    Evoy, S.3
  • 13
    • 84897402011 scopus 로고    scopus 로고
    • Mycobacteriophages: windows into tuberculosis
    • Hatfull GF. Mycobacteriophages: windows into tuberculosis. PLoS Pathog 2014, 10(3):e1003953.
    • (2014) PLoS Pathog , vol.10 , Issue.3 , pp. e1003953
    • Hatfull, G.F.1
  • 14
    • 84907450951 scopus 로고    scopus 로고
    • Understanding the enormous diversity of bacteriophages: the tailed phages that infect the bacterial family Enterobacteriaceae
    • 468-470C
    • Grose JH, Casjens SR. Understanding the enormous diversity of bacteriophages: the tailed phages that infect the bacterial family Enterobacteriaceae. Virol J 2014, 468-470C:421-443.
    • (2014) Virol J , pp. 421-443
    • Grose, J.H.1    Casjens, S.R.2
  • 17
    • 77950214391 scopus 로고    scopus 로고
    • Prevalence of Bacillus anthracis-like organisms and bacteriophages in the intestinal tract of the earthworm Eisenia fetida
    • Schuch R, Pelzek AJ, Kan S, Fischetti VA. Prevalence of Bacillus anthracis-like organisms and bacteriophages in the intestinal tract of the earthworm Eisenia fetida. Appl Environ Microbiol 2010, 76(7):2286-2294.
    • (2010) Appl Environ Microbiol , vol.76 , Issue.7 , pp. 2286-2294
    • Schuch, R.1    Pelzek, A.J.2    Kan, S.3    Fischetti, V.A.4
  • 18
    • 0017126252 scopus 로고
    • Characteristics of phage AP50, an RNA phage containing phospholipids
    • Nagy E, Pragai B, Ivanovics G. Characteristics of phage AP50, an RNA phage containing phospholipids. J General Virol 1976, 32(1):129-132.
    • (1976) J General Virol , vol.32 , Issue.1 , pp. 129-132
    • Nagy, E.1    Pragai, B.2    Ivanovics, G.3
  • 19
    • 14644396520 scopus 로고    scopus 로고
    • GIL16, a new gram-positive tectiviral phage related to the Bacillus thuringiensis GIL01 and the Bacillus cereus pBClin15 elements
    • Verheust C, Fornelos N, Mahillon J. GIL16, a new gram-positive tectiviral phage related to the Bacillus thuringiensis GIL01 and the Bacillus cereus pBClin15 elements. J Bacteriol 2005, 187(6):1966-1973.
    • (2005) J Bacteriol , vol.187 , Issue.6 , pp. 1966-1973
    • Verheust, C.1    Fornelos, N.2    Mahillon, J.3
  • 20
    • 0042925630 scopus 로고    scopus 로고
    • PGIL01, a linear tectiviral plasmid prophage originating from Bacillus thuringiensis serovar israelensis
    • Verheust C, Jensen G, Mahillon J. pGIL01, a linear tectiviral plasmid prophage originating from Bacillus thuringiensis serovar israelensis. Microbiology 2003, 149(Pt 8):2083-2092.
    • (2003) Microbiology , vol.149 , pp. 2083-2092
    • Verheust, C.1    Jensen, G.2    Mahillon, J.3
  • 21
    • 84907883708 scopus 로고    scopus 로고
    • The genomes, proteomes and structure of three novel phages that infect the bacillus cereus group and carry putative virulence factors
    • In Press
    • Grose JH, Belnap DM, Jensen JD, Mathis AD, Prince JT, Burnett SH, Breakwell DP. The genomes, proteomes and structure of three novel phages that infect the bacillus cereus group and carry putative virulence factors. J Virol 2014, In Press.
    • (2014) J Virol
    • Grose, J.H.1    Belnap, D.M.2    Jensen, J.D.3    Mathis, A.D.4    Prince, J.T.5    Burnett, S.H.6    Breakwell, D.P.7
  • 22
    • 84890467275 scopus 로고    scopus 로고
    • A new topology of the HK97-like fold revealed in Bordetella bacteriophage by cryoEM at 3.5 A resolution
    • Zhang X, Guo H, Jin L, Czornyj E, Hodes A, Hui WH, Nieh AW, Miller JF, Zhou ZH. A new topology of the HK97-like fold revealed in Bordetella bacteriophage by cryoEM at 3.5 A resolution. eLife 2013, 2:e01299.
    • (2013) eLife , vol.2 , pp. e01299
    • Zhang, X.1    Guo, H.2    Jin, L.3    Czornyj, E.4    Hodes, A.5    Hui, W.H.6    Nieh, A.W.7    Miller, J.F.8    Zhou, Z.H.9
  • 23
    • 84864575605 scopus 로고    scopus 로고
    • SH3 domains come of age
    • Kay BK. SH3 domains come of age. FEBS Lett 2012, 586(17):2606-2608.
    • (2012) FEBS Lett , vol.586 , Issue.17 , pp. 2606-2608
    • Kay, B.K.1
  • 24
    • 0019870443 scopus 로고
    • Terminal proteins and short inverted terminal repeats of the small Bacillus bacteriophage genomes
    • Yoshikawa H, Ito J. Terminal proteins and short inverted terminal repeats of the small Bacillus bacteriophage genomes. Proc Natl Acad Sci U S A 1981, 78(4):2596-2600.
    • (1981) Proc Natl Acad Sci U S A , vol.78 , Issue.4 , pp. 2596-2600
    • Yoshikawa, H.1    Ito, J.2
  • 25
    • 84997821008 scopus 로고    scopus 로고
    • Complete genome sequence of the novel phage MG-B1 infecting bacillus weihenstephanensis
    • Redondo RA, Kupczok A, Stift G, Bollback JP. Complete genome sequence of the novel phage MG-B1 infecting bacillus weihenstephanensis. Genome Announcements 2013, 1:3.
    • (2013) Genome Announcements , vol.1 , pp. 3
    • Redondo, R.A.1    Kupczok, A.2    Stift, G.3    Bollback, J.P.4
  • 28
    • 79952160956 scopus 로고    scopus 로고
    • Complete nucleotide sequence and molecular characterization of bacillus phage TP21 and its relatedness to other phages with the same name
    • Klumpp J, Calendar R, Loessner MJ. Complete nucleotide sequence and molecular characterization of bacillus phage TP21 and its relatedness to other phages with the same name. Viruses 2010, 2(4):961-971.
    • (2010) Viruses , vol.2 , Issue.4 , pp. 961-971
    • Klumpp, J.1    Calendar, R.2    Loessner, M.J.3
  • 29
    • 33645967146 scopus 로고    scopus 로고
    • Detailed genomic analysis of the Wbeta and gamma phages infecting Bacillus anthracis: implications for evolution of environmental fitness and antibiotic resistance
    • Schuch R, Fischetti VA. Detailed genomic analysis of the Wbeta and gamma phages infecting Bacillus anthracis: implications for evolution of environmental fitness and antibiotic resistance. J Bacteriol 2006, 188(8):3037-3051.
    • (2006) J Bacteriol , vol.188 , Issue.8 , pp. 3037-3051
    • Schuch, R.1    Fischetti, V.A.2
  • 32
    • 84861391321 scopus 로고    scopus 로고
    • Genome characteristics of a novel phage from Bacillus thuringiensis showing high similarity with phage from Bacillus cereus
    • Yuan Y, Gao M, Wu D, Liu P, Wu Y. Genome characteristics of a novel phage from Bacillus thuringiensis showing high similarity with phage from Bacillus cereus. PLoS One 2012, 7(5):e37557.
    • (2012) PLoS One , vol.7 , Issue.5 , pp. e37557
    • Yuan, Y.1    Gao, M.2    Wu, D.3    Liu, P.4    Wu, Y.5
  • 41
    • 18644362176 scopus 로고    scopus 로고
    • The genome of BCJA1c: a bacteriophage active against the alkaliphilic bacterium, Bacillus clarkii
    • Kropinski AM, Hayward M, Agnew MD, Jarrell KF. The genome of BCJA1c: a bacteriophage active against the alkaliphilic bacterium, Bacillus clarkii. Extremophiles 2005, 9(2):99-109.
    • (2005) Extremophiles , vol.9 , Issue.2 , pp. 99-109
    • Kropinski, A.M.1    Hayward, M.2    Agnew, M.D.3    Jarrell, K.F.4
  • 43
    • 50549213962 scopus 로고
    • The Carrier State of Bacillus Subtilis Infected with the Transducing Bacteriophage Sp10
    • Bott K, Strauss B. The Carrier State of Bacillus Subtilis Infected with the Transducing Bacteriophage Sp10. Virology 1965, 25:212-225.
    • (1965) Virology , vol.25 , pp. 212-225
    • Bott, K.1    Strauss, B.2
  • 44
    • 84862909016 scopus 로고    scopus 로고
    • Complete genome sequence of Bacillus cereus bacteriophage BCP78
    • Lee JH, Shin H, Son B, Ryu S. Complete genome sequence of Bacillus cereus bacteriophage BCP78. J Virol 2012, 86(1):637-638.
    • (2012) J Virol , vol.86 , Issue.1 , pp. 637-638
    • Lee, J.H.1    Shin, H.2    Son, B.3    Ryu, S.4
  • 45
    • 84899858221 scopus 로고    scopus 로고
    • The discovery of phiAGATE, a novel phage infecting bacillus pumilus, leads to New insights into the phylogeny of the subfamily spounavirinae
    • Barylski J, Nowicki G, Gozdzicka-Jozefiak A. The discovery of phiAGATE, a novel phage infecting bacillus pumilus, leads to New insights into the phylogeny of the subfamily spounavirinae. PLoS One 2014, 9(1):e86632.
    • (2014) PLoS One , vol.9 , Issue.1 , pp. e86632
    • Barylski, J.1    Nowicki, G.2    Gozdzicka-Jozefiak, A.3
  • 48
    • 84858139801 scopus 로고    scopus 로고
    • Characterization of LysB4, an endolysin from the Bacillus cereus-infecting bacteriophage B4
    • Son B, Yun J, Lim JA, Shin H, Heu S, Ryu S. Characterization of LysB4, an endolysin from the Bacillus cereus-infecting bacteriophage B4. BMC Microbiol 2012, 12:33.
    • (2012) BMC Microbiol , vol.12 , pp. 33
    • Son, B.1    Yun, J.2    Lim, J.A.3    Shin, H.4    Heu, S.5    Ryu, S.6
  • 49
    • 0037545836 scopus 로고    scopus 로고
    • Characterization of poly-gamma-glutamate hydrolase encoded by a bacteriophage genome: possible role in phage infection of Bacillus subtilis encapsulated with poly-gamma-glutamate
    • Kimura K, Itoh Y. Characterization of poly-gamma-glutamate hydrolase encoded by a bacteriophage genome: possible role in phage infection of Bacillus subtilis encapsulated with poly-gamma-glutamate. Appl Environ Microbiol 2003, 69(5):2491-2497.
    • (2003) Appl Environ Microbiol , vol.69 , Issue.5 , pp. 2491-2497
    • Kimura, K.1    Itoh, Y.2
  • 50
    • 0030894847 scopus 로고    scopus 로고
    • Three Bacillus cereus bacteriophage endolysins are unrelated but reveal high homology to cell wall hydrolases from different bacilli
    • Loessner MJ, Maier SK, Daubek-Puza H, Wendlinger G, Scherer S. Three Bacillus cereus bacteriophage endolysins are unrelated but reveal high homology to cell wall hydrolases from different bacilli. J Bacteriol 1997, 179(9):2845-2851.
    • (1997) J Bacteriol , vol.179 , Issue.9 , pp. 2845-2851
    • Loessner, M.J.1    Maier, S.K.2    Daubek-Puza, H.3    Wendlinger, G.4    Scherer, S.5
  • 51
    • 84862259899 scopus 로고    scopus 로고
    • Characterization of an endolysin, LysBPS13, from a Bacillus cereus bacteriophage
    • Park J, Yun J, Lim JA, Kang DH, Ryu S. Characterization of an endolysin, LysBPS13, from a Bacillus cereus bacteriophage. FEMS Microbiol Lett 2012, 332(1):76-83.
    • (2012) FEMS Microbiol Lett , vol.332 , Issue.1 , pp. 76-83
    • Park, J.1    Yun, J.2    Lim, J.A.3    Kang, D.H.4    Ryu, S.5
  • 52
    • 84905225781 scopus 로고    scopus 로고
    • Characterization and genome analysis of the Bacillus cereus-infecting bacteriophages BPS10C and BPS13
    • Shin H, Lee JH, Park J, Heu S, Ryu S. Characterization and genome analysis of the Bacillus cereus-infecting bacteriophages BPS10C and BPS13. Arch Virol 2014,
    • (2014) Arch Virol
    • Shin, H.1    Lee, J.H.2    Park, J.3    Heu, S.4    Ryu, S.5
  • 53
    • 0014547894 scopus 로고
    • Evidence that Bacillus subtilis bacteriophage SP02 is temperate and heteroimmune to bacteriophage phi-105
    • Boice LB. Evidence that Bacillus subtilis bacteriophage SP02 is temperate and heteroimmune to bacteriophage phi-105. J Virol 1969, 4(1):47-49.
    • (1969) J Virol , vol.4 , Issue.1 , pp. 47-49
    • Boice, L.B.1
  • 54
    • 84863574652 scopus 로고    scopus 로고
    • Complete genome sequence of Bacillus cereus bacteriophage PBC1
    • Kong M, Kim M, Ryu S. Complete genome sequence of Bacillus cereus bacteriophage PBC1. J Virol 2012, 86(11):6379-6380.
    • (2012) J Virol , vol.86 , Issue.11 , pp. 6379-6380
    • Kong, M.1    Kim, M.2    Ryu, S.3
  • 55
    • 0014292441 scopus 로고
    • Relationship between competence for transfection and for transformation
    • Riva S, Polsinelli M. Relationship between competence for transfection and for transformation. J Virol 1968, 2(6):587-593.
    • (1968) J Virol , vol.2 , Issue.6 , pp. 587-593
    • Riva, S.1    Polsinelli, M.2
  • 56
    • 84878629640 scopus 로고    scopus 로고
    • Complete nucleotide sequence of Bacillus subtilis (natto) bacteriophage PM1, a phage associated with disruption of food production
    • Umene K, Shiraishi A. Complete nucleotide sequence of Bacillus subtilis (natto) bacteriophage PM1, a phage associated with disruption of food production. Virus Genes 2013, 46(3):524-534.
    • (2013) Virus Genes , vol.46 , Issue.3 , pp. 524-534
    • Umene, K.1    Shiraishi, A.2
  • 58
    • 0014502376 scopus 로고
    • Effect of nalidixic acid on deoxyribonucleic acid synthesis in bacteriophage SPO1-infected Bacillus subtilis
    • Gage LP, Fujita DJ. Effect of nalidixic acid on deoxyribonucleic acid synthesis in bacteriophage SPO1-infected Bacillus subtilis. J Bacteriol 1969, 98(1):96-103.
    • (1969) J Bacteriol , vol.98 , Issue.1 , pp. 96-103
    • Gage, L.P.1    Fujita, D.J.2
  • 60
    • 33847729054 scopus 로고    scopus 로고
    • Propagating the missing bacteriophages: a large bacteriophage in a new class
    • Serwer P, Hayes SJ, Thomas JA, Hardies SC. Propagating the missing bacteriophages: a large bacteriophage in a new class. Virol J 2007, 4:21.
    • (2007) Virol J , vol.4 , pp. 21
    • Serwer, P.1    Hayes, S.J.2    Thomas, J.A.3    Hardies, S.C.4
  • 61
    • 34249734822 scopus 로고    scopus 로고
    • Gepard: a rapid and sensitive tool for creating dotplots on genome scale
    • Krumsiek J, Arnold R, Rattei T. Gepard: a rapid and sensitive tool for creating dotplots on genome scale. Bioinformatics 2007, 23(8):1026-1028.
    • (2007) Bioinformatics , vol.23 , Issue.8 , pp. 1026-1028
    • Krumsiek, J.1    Arnold, R.2    Rattei, T.3
  • 63
    • 77953658770 scopus 로고    scopus 로고
    • Data mining pathogen genomes using GeneOrder and CoreGenes and CGUG: gene order, synteny and in silico proteomes
    • Mahadevan P, King JF, Seto D. Data mining pathogen genomes using GeneOrder and CoreGenes and CGUG: gene order, synteny and in silico proteomes. Int J Comput Biol Drug Des 2009, 2(1):100-114.
    • (2009) Int J Comput Biol Drug Des , vol.2 , Issue.1 , pp. 100-114
    • Mahadevan, P.1    King, J.F.2    Seto, D.3
  • 64
    • 84875845952 scopus 로고    scopus 로고
    • CoreGenes3.5: a webserver for the determination of core genes from sets of viral and small bacterial genomes
    • Turner D, Reynolds D, Seto D, Mahadevan P. CoreGenes3.5: a webserver for the determination of core genes from sets of viral and small bacterial genomes. BMC Res Notes 2013, 6:140.
    • (2013) BMC Res Notes , vol.6 , pp. 140
    • Turner, D.1    Reynolds, D.2    Seto, D.3    Mahadevan, P.4
  • 67
    • 0002107186 scopus 로고
    • Control mechanisms in dsDNA bacteriophage assembly
    • New York City: Plenum Press, Calendar R
    • Casjens S, Hendrix R. Control mechanisms in dsDNA bacteriophage assembly. The Bacteriophages 1988, 15-91. New York City: Plenum Press, Calendar R, vol. 1.
    • (1988) The Bacteriophages , vol.1 , pp. 15-91
    • Casjens, S.1    Hendrix, R.2
  • 68
    • 79952072125 scopus 로고    scopus 로고
    • Evolution of mosaically related tailed bacteriophage genomes seen through the lens of phage P22 virion assembly
    • Casjens SR, Thuman-Commike PA. Evolution of mosaically related tailed bacteriophage genomes seen through the lens of phage P22 virion assembly. Virology 2011, 411(2):393-415.
    • (2011) Virology , vol.411 , Issue.2 , pp. 393-415
    • Casjens, S.R.1    Thuman-Commike, P.A.2
  • 69
    • 3042666256 scopus 로고    scopus 로고
    • MUSCLE: multiple sequence alignment with high accuracy and high throughput
    • Edgar RC. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res 2004, 32(5):1792-1797.
    • (2004) Nucleic Acids Res , vol.32 , Issue.5 , pp. 1792-1797
    • Edgar, R.C.1
  • 70
    • 79957613599 scopus 로고    scopus 로고
    • MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods
    • Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S. MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 2011, 28(10):2731-2739.
    • (2011) Mol Biol Evol , vol.28 , Issue.10 , pp. 2731-2739
    • Tamura, K.1    Peterson, D.2    Peterson, N.3    Stecher, G.4    Nei, M.5    Kumar, S.6
  • 71
    • 62449181292 scopus 로고    scopus 로고
    • Determining DNA packaging strategy by analysis of the termini of the chromosomes in tailed-bacteriophage virions
    • Casjens SR, Gilcrease EB. Determining DNA packaging strategy by analysis of the termini of the chromosomes in tailed-bacteriophage virions. Methods Mol Biol 2009, 502:91-111.
    • (2009) Methods Mol Biol , vol.502 , pp. 91-111
    • Casjens, S.R.1    Gilcrease, E.B.2
  • 72
    • 84907285382 scopus 로고    scopus 로고
    • Characterization of Paenibacillus larvae bacteriophages and their genomic relationships to Firmicute bacteriophages
    • Merrill BD, Grose JH, Breakwell DP, Burnett SH. Characterization of Paenibacillus larvae bacteriophages and their genomic relationships to Firmicute bacteriophages. BMC Genomics 2014, 15:745.
    • (2014) BMC Genomics , vol.15 , pp. 745
    • Merrill, B.D.1    Grose, J.H.2    Breakwell, D.P.3    Burnett, S.H.4
  • 73
    • 50249163139 scopus 로고    scopus 로고
    • The terminally redundant, nonpermuted genome of Listeria bacteriophage A511: a model for the SPO1-like myoviruses of gram-positive bacteria
    • Klumpp J, Dorscht J, Lurz R, Bielmann R, Wieland M, Zimmer M, Calendar R, Loessner MJ. The terminally redundant, nonpermuted genome of Listeria bacteriophage A511: a model for the SPO1-like myoviruses of gram-positive bacteria. J Bacteriol 2008, 190(17):5753-5765.
    • (2008) J Bacteriol , vol.190 , Issue.17 , pp. 5753-5765
    • Klumpp, J.1    Dorscht, J.2    Lurz, R.3    Bielmann, R.4    Wieland, M.5    Zimmer, M.6    Calendar, R.7    Loessner, M.J.8
  • 77
    • 84873343920 scopus 로고    scopus 로고
    • A bioinformatic analysis of ribonucleotide reductase genes in phage genomes and metagenomes
    • Dwivedi B, Xue B, Lundin D, Edwards RA, Breitbart M. A bioinformatic analysis of ribonucleotide reductase genes in phage genomes and metagenomes. BMC Evol Biol 2013, 13:33.
    • (2013) BMC Evol Biol , vol.13 , pp. 33
    • Dwivedi, B.1    Xue, B.2    Lundin, D.3    Edwards, R.A.4    Breitbart, M.5
  • 78
    • 84858751288 scopus 로고    scopus 로고
    • Structural evolution of the P22-like phages: comparison of Sf6 and P22 procapsid and virion architectures
    • Parent KN, Gilcrease EB, Casjens SR, Baker TS. Structural evolution of the P22-like phages: comparison of Sf6 and P22 procapsid and virion architectures. Virology 2012, 427(2):177-188.
    • (2012) Virology , vol.427 , Issue.2 , pp. 177-188
    • Parent, K.N.1    Gilcrease, E.B.2    Casjens, S.R.3    Baker, T.S.4
  • 84
    • 0030065608 scopus 로고    scopus 로고
    • Two domains of superfamily I helicases may exist as separate proteins
    • Koonin EV, Rudd KE. Two domains of superfamily I helicases may exist as separate proteins. Protein Sci 1996, 5(1):178-180.
    • (1996) Protein Sci , vol.5 , Issue.1 , pp. 178-180
    • Koonin, E.V.1    Rudd, K.E.2
  • 85
    • 0027416514 scopus 로고
    • Molecular analysis of the phoH gene, belonging to the phosphate regulon in Escherichia coli
    • Kim SK, Makino K, Amemura M, Shinagawa H, Nakata A. Molecular analysis of the phoH gene, belonging to the phosphate regulon in Escherichia coli. J Bacteriol 1993, 175(5):1316-1324.
    • (1993) J Bacteriol , vol.175 , Issue.5 , pp. 1316-1324
    • Kim, S.K.1    Makino, K.2    Amemura, M.3    Shinagawa, H.4    Nakata, A.5
  • 87
    • 33847386388 scopus 로고    scopus 로고
    • Variability in tellurite resistance and the ter gene cluster among Shiga toxin-producing Escherichia coli isolated from humans, animals and food
    • Orth D, Grif K, Dierich MP, Wurzner R. Variability in tellurite resistance and the ter gene cluster among Shiga toxin-producing Escherichia coli isolated from humans, animals and food. Res Microbiol 2007, 158(2):105-111.
    • (2007) Res Microbiol , vol.158 , Issue.2 , pp. 105-111
    • Orth, D.1    Grif, K.2    Dierich, M.P.3    Wurzner, R.4
  • 88
    • 79956321451 scopus 로고    scopus 로고
    • Bacillus taxonomy in the genomic era finds phenotypes to be essential though often misleading
    • Maughan H, Van der Auwera G. Bacillus taxonomy in the genomic era finds phenotypes to be essential though often misleading. Infect Genet Evol 2011, 11(5):789-797.
    • (2011) Infect Genet Evol , vol.11 , Issue.5 , pp. 789-797
    • Maughan, H.1    Van der Auwera, G.2
  • 89
    • 79960404845 scopus 로고    scopus 로고
    • Bacillus anthracis: molecular taxonomy, population genetics, phylogeny and patho-evolution
    • Pilo P, Frey J. Bacillus anthracis: molecular taxonomy, population genetics, phylogeny and patho-evolution. Infect Genet Evol 2011, 11(6):1218-1224.
    • (2011) Infect Genet Evol , vol.11 , Issue.6 , pp. 1218-1224
    • Pilo, P.1    Frey, J.2
  • 90
    • 84873349855 scopus 로고    scopus 로고
    • Genome sequence and analysis of a broad-host range lytic bacteriophage that infects the Bacillus cereus group
    • El-Arabi TF, Griffiths MW, She YM, Villegas A, Lingohr EJ, Kropinski AM. Genome sequence and analysis of a broad-host range lytic bacteriophage that infects the Bacillus cereus group. Virol J 2013, 10:48.
    • (2013) Virol J , vol.10 , pp. 48
    • El-Arabi, T.F.1    Griffiths, M.W.2    She, Y.M.3    Villegas, A.4    Lingohr, E.J.5    Kropinski, A.M.6
  • 92
    • 29244447181 scopus 로고    scopus 로고
    • Kalign-an accurate and fast multiple sequence alignment algorithm
    • Lassmann T, Sonnhammer EL. Kalign-an accurate and fast multiple sequence alignment algorithm. BMC Bioinformatics 2005, 6:298.
    • (2005) BMC Bioinformatics , vol.6 , pp. 298
    • Lassmann, T.1    Sonnhammer, E.L.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.