Complete genome of Bacillus megaterium siphophage Slash

Genome Announcements

Volumn 1, Issue 6, 2013, Pages

  DeCrescenzo, Andrew J ^a   Ritter, Matthew A ^a   Chamakura, Karthik R ^a   Kuty Everett, Gabriel F ^a  

^a TEXAS A AND M UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 84999663815     PISSN: None     EISSN: 21698287     Source Type: Journal    
DOI: 10.1128/genomeA.00862-13     Document Type: Article

References (11)

1. Vary PS, Biedendieck R, Fuerch T, Meinhardt F, Rohde M, Deckwer WD, Jahn D. 2007. Bacillus megaterium-from simple soil bacterium to industrial protein production host. Appl. Microbiol. Biotechnol. 76: 957-967.
2. Bunk B, Schulz A, Stammen S, Münch R, Warren MJ, Rohde M, Jahn D, Biedendieck R. 2010. A short story about a big magic bug. Bioeng. Bugs 1:85-91.
3. Vary PS, Garbe JC, Franzen M, Frampton EW. 1982. MP13, a general-ized transducing bacteriophage for Bacillus megaterium. J. Bacteriol. 149: 1112-1119.
4. Besemer J, Lomsadze A, Borodovsky M. 2001. GeneMarkS: a selftraining method for prediction of gene starts in microbial genomes. Implications for finding sequence motifs in regulatory regions. Nucleic Acids Res. 29:2607-2618.
5. Camacho C, Coulouris G, Avagyan V, Ma N, Papadopoulos J, Bealer K, Madden TL. 2009. BLAST+: architecture and applications. BMC Bioinformatics 10:421. doi:10.1186/1471-2105-10-421.
6. Hunter S, Apweiler R, Attwood TK, Bairoch A, Bateman A, Binns D, Bork P, Das U, Daugherty L, Duquenne L, Finn RD, Gough J, Haft D, Hulo N, Kahn D, Kelly E, Laugraud A, Letunic I, Lonsdale D, Lopez R, Madera M, Maslen J, McAnulla C, McDowall J, Mistry J, Mitchell A, Mulder N, Natale D, Orengo C, Quinn AF, Selengut JD, Sigrist CJ, Thimma M, Thomas PD, Valentin F, Wilson D, Wu CH, Yeats C. 2009. InterPro: the integrative protein signature database. Nucleic Acids Res. 37:D211-D215. doi:10.1093/nar/gkn785.
7. Magnani E, Sjölander K, Hake S. 2004. From endonucleases to transcription factors: evolution of the AP2 DNA binding domain in plants. Plant Cell 16:2265-2277.
8. Yamasaki K, Kigawa T, Seki M, Shinozaki K, Yokoyama S. 2013. DNA-binding domains of plant-specific transcription factors: structure, function, and evolution. Trends Plant Sci. 18:267-276.
9. Bateman A, Bycroft M. 2000. The structure of a LysM domain from E. coli membrane-bound lytic murein transglycosylase D (MltD). J. Mol. Biol. 299:1113-1119.
10. Gibbs GM, Roelants K, O'Bryan MK. 2008. The CAP superfamily: cysteine-rich secretory proteins, antigen 5, and pathogenesis-related 1 proteins-roles in reproduction, cancer, and immune defense. Endocr. Rev. 29:865-897.
11. Subramanian G, Koonin EV, Aravind L. 2000. Comparative genome analysis of the pathogenic spirochetes Borrelia burgdorferi and Treponema pallidum. Infect. Immun. 68:1633-1648.