-
1
-
-
80053377130
-
Bacteriophages and their genomes
-
Hatfull GF, Hendrix RW. 2011. Bacteriophages and their genomes. Curr. Opin. Virol. 1:298-303. http://dx.doi.org/10.1016/j.coviro.2011.06.009.
-
(2011)
Curr. Opin. Virol.
, vol.1
, pp. 298-303
-
-
Hatfull, G.F.1
Hendrix, R.W.2
-
2
-
-
58249122442
-
Jumbo bacteriophages
-
Hendrix RW. 2009. Jumbo bacteriophages. Curr. Top. Microbiol. Immunol. 328:229-240. http://dx.doi.org/10.1007/978-3-540-68618-7_7.
-
(2009)
Curr. Top. Microbiol. Immunol.
, vol.328
, pp. 229-240
-
-
Hendrix, R.W.1
-
3
-
-
77957955708
-
Mycobacteriophages: genes and genomes
-
Hatfull GF. 2010. Mycobacteriophages: genes and genomes. Annu. Rev. Microbiol. 64:331-356. http://dx.doi.org/10.1146/annurev.micro.112408.134233.
-
(2010)
Annu. Rev. Microbiol.
, vol.64
, pp. 331-356
-
-
Hatfull, G.F.1
-
4
-
-
84858273407
-
The secret lives of mycobacteriophages
-
Hatfull GF. 2012. The secret lives of mycobacteriophages. Adv. Virus Res. 82:179-288. http://dx.doi.org/10.1016/B978-0-12-394621-8.00015-7.
-
(2012)
Adv. Virus Res.
, vol.82
, pp. 179-288
-
-
Hatfull, G.F.1
-
5
-
-
84879978365
-
Cluster J mycobacteriophages: intron splicing in capsid and tail genes
-
Pope WH, Jacobs-Sera D, Best AA, Broussard GW, Connerly PL, Dedrick RM, Kremer TA, Offner S, Ogiefo AH, Pizzorno MC, Rockenbach K, Russell DA, Stowe EL, Stukey J, Thibault SA, Conway JF, Hendrix RW, Hatfull GF. 2013. Cluster J mycobacteriophages: intron splicing in capsid and tail genes. PLoS One 8:e69273. http://dx.doi.org/10.1371/journal.pone.0069273.
-
(2013)
PLoS One
, vol.8
-
-
Pope, W.H.1
Jacobs-Sera, D.2
Best, A.A.3
Broussard, G.W.4
Connerly, P.L.5
Dedrick, R.M.6
Kremer, T.A.7
Offner, S.8
Ogiefo, A.H.9
Pizzorno, M.C.10
Rockenbach, K.11
Russell, D.A.12
Stowe, E.L.13
Stukey, J.14
Thibault, S.A.15
Conway, J.F.16
Hendrix, R.W.17
Hatfull, G.F.18
-
6
-
-
84857073808
-
Complete genome sequences of 138 mycobacteriophages
-
Hatfull GF. 2012. Complete genome sequences of 138 mycobacteriophages. J. Virol. 86:2382-2384. http://dx.doi.org/10.1128/JVI.06870-11.
-
(2012)
J. Virol.
, vol.86
, pp. 2382-2384
-
-
Hatfull, G.F.1
-
7
-
-
33745698561
-
Exploring the mycobacteriophage metaproteome: phage genomics as an educational platform
-
Hatfull GF, Pedulla ML, Jacobs-Sera D, Cichon PM, Foley A, Ford ME, Gonda RM, Houtz JM, Hryckowian AJ, Kelchner VA, Namburi S, Pajcini KV, Popovich MG, Schleicher DT, Simanek BZ, Smith AL, Zdanowicz GM, Kumar V, Peebles CL, Jacobs WR, Jr, Lawrence JG, Hendrix RW. 2006. Exploring the mycobacteriophage metaproteome: phage genomics as an educational platform. PLoS Genet. 2:e92. http://dx.doi.org/10.1371/journal.pgen.0020092.
-
(2006)
PLoS Genet.
, vol.2
-
-
Hatfull, G.F.1
Pedulla, M.L.2
Jacobs-Sera, D.3
Cichon, P.M.4
Foley, A.5
Ford, M.E.6
Gonda, R.M.7
Houtz, J.M.8
Hryckowian, A.J.9
Kelchner, V.A.10
Namburi, S.11
Pajcini, K.V.12
Popovich, M.G.13
Schleicher, D.T.14
Simanek, B.Z.15
Smith, A.L.16
Zdanowicz, G.M.17
Kumar, V.18
Peebles, C.L.19
Jacobs Jr., W.R.20
Lawrence, J.G.21
Hendrix, R.W.22
more..
-
8
-
-
0000094278
-
Mycobacteriophage L5: a toolbox for tuberculosis
-
Hatfull GF. 1994. Mycobacteriophage L5: a toolbox for tuberculosis. ASM News 60:255-260.
-
(1994)
ASM News
, vol.60
, pp. 255-260
-
-
Hatfull, G.F.1
-
9
-
-
33745710106
-
-
(ed), Tuberculosis.ASM Press, Washington, DC
-
Hatfull GF. 2004. Mycobacteriophages and tuberculosis, p 203-218. In Eisenach K, Cole ST, Jacobs WR, Jr, McMurrayD(ed), Tuberculosis.ASM Press, Washington, DC.
-
(2004)
Mycobacteriophages and tuberculosis, In Eisenach K, Cole ST, Jacobs WR, Jr, McMurray D
, pp. 203-218
-
-
Hatfull, G.F.1
-
10
-
-
0034753254
-
Luciferase reporter mycobacteriophages for detection, identifica- tion, and antibiotic susceptibility testing of Mycobacterium tuberculosis in Mexico
-
Banaiee N, Bobadilla-Del-Valle M, Bardarov S, Jr, Riska PF, Small PM, Ponce-De-Leon A, Jacobs WR, Jr, Hatfull GF, Sifuentes-Osornio J. 2001. Luciferase reporter mycobacteriophages for detection, identifica- tion, and antibiotic susceptibility testing of Mycobacterium tuberculosis in Mexico. J. Clin. Microbiol. 39:3883-3888. http://dx.doi.org/10.1128/JCM.39.11.3883-3888.2001.
-
(2001)
J. Clin. Microbiol.
, vol.39
, pp. 3883-3888
-
-
Banaiee, N.1
Bobadilla-Del-Valle, M.2
Bardarov Jr., S.3
Riska, P.F.4
Small, P.M.5
Ponce-De-Leon, A.6
Jacobs Jr., W.R.7
Hatfull, G.F.8
Sifuentes-Osornio, J.9
-
11
-
-
84861865655
-
Rewritable digital data storage in live cells via engineered control of recombination directionality
-
Bonnet J, Subsoontorn P, Endy D. 2012. Rewritable digital data storage in live cells via engineered control of recombination directionality. Proc. Natl. Acad. Sci. U. S. A. 109:8884-8889. http://dx.doi.org/10.1073/pnas.1202344109.
-
(2012)
Proc. Natl. Acad. Sci. U. S. A.
, vol.109
, pp. 8884-8889
-
-
Bonnet, J.1
Subsoontorn, P.2
Endy, D.3
-
12
-
-
33746425864
-
Efficient site-specific integration in Plasmodium falciparum chromosomes mediated by mycobacteriophage Bxb1 integrase
-
Nkrumah LJ, Muhle RA, Moura PA, Ghosh P, Hatfull GF, Jacobs WR, Jr, Fidock DA. 2006. Efficient site-specific integration in Plasmodium falciparum chromosomes mediated by mycobacteriophage Bxb1 integrase. Nat. Methods 3:615-621. http://dx.doi.org/10.1038/nmeth904.
-
(2006)
Nat. Methods
, vol.3
, pp. 615-621
-
-
Nkrumah, L.J.1
Muhle, R.A.2
Moura, P.A.3
Ghosh, P.4
Hatfull, G.F.5
Jacobs Jr., W.R.6
Fidock, D.A.7
-
13
-
-
0037453742
-
Origins of highly mosaic mycobacteriophage genomes
-
Pedulla ML, Ford ME, Houtz JM, Karthikeyan T, Wadsworth C, Lewis JA, Jacobs-Sera D, Falbo J, Gross J, Pannunzio NR, Brucker W, Kumar V, Kandasamy J, Keenan L, Bardarov S, Kriakov J, Lawrence JG, Jacobs WR, Hendrix RW, Hatfull GF. 2003. Origins of highly mosaic mycobacteriophage genomes. Cell 113:171-182. http://dx.doi.org/10.1016/S0092-8674(03)00233-2.
-
(2003)
Cell
, vol.113
, pp. 171-182
-
-
Pedulla, M.L.1
Ford, M.E.2
Houtz, J.M.3
Karthikeyan, T.4
Wadsworth, C.5
Lewis, J.A.6
Jacobs-Sera, D.7
Falbo, J.8
Gross, J.9
Pannunzio, N.R.10
Brucker, W.11
Kumar, V.12
Kandasamy, J.13
Keenan, L.14
Bardarov, S.15
Kriakov, J.16
Lawrence, J.G.17
Jacobs, W.R.18
Hendrix, R.W.19
Hatfull, G.F.20
more..
-
14
-
-
79551550376
-
Expanding the diversity of mycobacteriophages: insights into genome architecture and evolution
-
Pope WH, Jacobs-Sera D, Russell DA, Peebles CL, Al-Atrache Z, Alcoser TA, Alexander LM, Alfano MB, Alford ST, Amy NE, Anderson MD, Anderson AG, Ang AAS, Ares M, Jr, Barber AJ, Barker LP, Barrett JM, Barshop WD, Bauerle CM, Bayles IM, Belfield KL, Best AA, Borjon A, Jr, Bowman CA, Boyer CA, Bradley KW, Bradley VA, Broadway LN, Budwal K, Busby KN, Campbell IW, Campbell AM, Carey A, Caruso SM, Chew RD, Cockburn CL, Cohen LB, Corajod JM, Cresawn SG, Davis KR, Deng L, Denver DR, Dixon BR, Ekram S, Elgin SCR, Engelsen AE, English BEV, Erb ML, Estrada C, Filliger LZ, et al. 2011. Expanding the diversity of mycobacteriophages: insights into genome architecture and evolution. PLoS One 6:e16329. http://dx.doi.org/10.1371/journal.pone.0016329.
-
(2011)
PLoS One
, vol.6
-
-
Pope, W.H.1
Jacobs-Sera, D.2
Russell, D.A.3
Peebles, C.L.4
Al-Atrache, Z.5
Alcoser, T.A.6
Alexander, L.M.7
Alfano, M.B.8
Alford, S.T.9
Amy, N.E.10
Anderson, M.D.11
Anderson, A.G.12
Ang, A.A.S.13
Ares Jr., M.14
Barber, A.J.15
Barker, L.P.16
Barrett, J.M.17
Barshop, W.D.18
Bauerle, C.M.19
Bayles, I.M.20
Belfield, K.L.21
Best, A.A.22
Borjon Jr., A.23
Bowman, C.A.24
Boyer, C.A.25
Bradley, K.W.26
Bradley, V.A.27
Broadway, L.N.28
Budwal, K.29
Busby, K.N.30
Campbell, I.W.31
Campbell, A.M.32
Carey, A.33
Caruso, S.M.34
Chew, R.D.35
Cockburn, C.L.36
Cohen, L.B.37
Corajod, J.M.38
Cresawn, S.G.39
Davis, K.R.40
Deng, L.41
Denver, D.R.42
Dixon, B.R.43
Ekram, S.44
Elgin, S.C.R.45
Engelsen, A.E.46
English, B.E.V.47
Erb, M.L.48
Estrada, C.49
Filliger, L.Z.50
more..
-
15
-
-
69949178774
-
Mycobacteriophages BPs, Angel and Halo: comparative genomics reveals a novel class of ultra-small mobile genetic elements
-
Sampson T, Broussard GW, Marinelli LJ, Jacobs-Sera D, Ray M, Ko CC, Russell D, Hendrix RW, Hatfull GF. 2009. Mycobacteriophages BPs, Angel and Halo: comparative genomics reveals a novel class of ultra-small mobile genetic elements. Microbiology 155:2962-2977. http://dx.doi.org/10.1099/mic.0.030486-0.
-
(2009)
Microbiology
, vol.155
, pp. 2962-2977
-
-
Sampson, T.1
Broussard, G.W.2
Marinelli, L.J.3
Jacobs-Sera, D.4
Ray, M.5
Ko, C.C.6
Russell, D.7
Hendrix, R.W.8
Hatfull, G.F.9
-
16
-
-
84861307161
-
Mycobacteriophage Marvin: a new singleton phage with an unusual genome organization
-
Mageeney C, Pope WH, Harrison M, Moran D, Cross T, Jacobs-Sera D, Hendrix RW, Dunbar D, Hatfull GF. 2012. Mycobacteriophage Marvin: a new singleton phage with an unusual genome organization. J. Virol. 86:4762-4775. http://dx.doi.org/10.1128/JVI.00075-12.
-
(2012)
J. Virol.
, vol.86
, pp. 4762-4775
-
-
Mageeney, C.1
Pope, W.H.2
Harrison, M.3
Moran, D.4
Cross, T.5
Jacobs-Sera, D.6
Hendrix, R.W.7
Dunbar, D.8
Hatfull, G.F.9
-
17
-
-
0030803306
-
Transcriptional silencing by the mycobacteriophage L5 repressor
-
Brown KL, Sarkis GJ, Wadsworth C, Hatfull GF. 1997. Transcriptional silencing by the mycobacteriophage L5 repressor.EMBOJ. 16:5914-5921. http://dx.doi.org/10.1093/emboj/16.19.5914.
-
(1997)
EMBOJ.
, vol.16
, pp. 5914-5921
-
-
Brown, K.L.1
Sarkis, G.J.2
Wadsworth, C.3
Hatfull, G.F.4
-
18
-
-
84872783870
-
Integration-dependent bacteriophage immunity provides insights into the evolution of genetic switches
-
Broussard GW, Oldfield LM, Villanueva VM, Lunt BL, Shine EE, Hatfull GF. 2013. Integration-dependent bacteriophage immunity provides insights into the evolution of genetic switches. Mol. Cell 49:237-248. http://dx.doi.org/10.1016/j.molcel.2012.11.012.
-
(2013)
Mol. Cell
, vol.49
, pp. 237-248
-
-
Broussard, G.W.1
Oldfield, L.M.2
Villanueva, V.M.3
Lunt, B.L.4
Shine, E.E.5
Hatfull, G.F.6
-
19
-
-
80055027771
-
Cluster K mycobacteriophages: insights into the evolutionary origins of mycobacteriophage TM4
-
Pope WH, Ferreira CM, Jacobs-Sera D, Benjamin RC, Davis AJ, DeJong RJ, Elgin SCR, Guilfoile FR, Forsyth MH, Harris AD, Harvey SE, Hughes LE, Hynes PM, Jackson AS, Jalal MD, MacMurray EA, Manley CM, McDonough MJ, Mosier JL, Osterbann LJ, Rabinowitz HS, Rhyan CN, Russell DA, Saha MS, Shaffer CD, Simon SE, Sims EF, Tovar IG, Weisser EG, Wertz JT, Weston-Hafer KA, Williamson KE, Zhang B, Cresawn SG, Jain P, Piuri M, Jacobs WR, Jr, Hendrix RW, Hatfull GF. 2011. Cluster K mycobacteriophages: insights into the evolutionary origins of mycobacteriophage TM4. PLoS One 6:e26750. http://dx.doi.org/10.1371/journal.pone.0026750.
-
(2011)
PLoS One
, vol.6
-
-
Pope, W.H.1
Ferreira, C.M.2
Jacobs-Sera, D.3
Benjamin, R.C.4
Davis, A.J.5
DeJong, R.J.6
Elgin, S.C.R.7
Guilfoile, F.R.8
Forsyth, M.H.9
Harris, A.D.10
Harvey, S.E.11
Hughes, L.E.12
Hynes, P.M.13
Jackson, A.S.14
Jalal, M.D.15
MacMurray, E.A.16
Manley, C.M.17
McDonough, M.J.18
Mosier, J.L.19
Osterbann, L.J.20
Rabinowitz, H.S.21
Rhyan, C.N.22
Russell, D.A.23
Saha, M.S.24
Shaffer, C.D.25
Simon, S.E.26
Sims, E.F.27
Tovar, I.G.28
Weisser, E.G.29
Wertz, J.T.30
Weston-Hafer, K.A.31
Williamson, K.E.32
Zhang, B.33
Cresawn, S.G.34
Jain, P.35
Piuri, M.36
Jacobs Jr., W.R.37
Hendrix, R.W.38
Hatfull, G.F.39
more..
-
20
-
-
84870667528
-
On the nature of mycobacteriophage diversity and host preference
-
Science Education Alliance Phage Hunters Advancing Genomics Evolutionary Science (SEA-PHAGES) Program
-
Jacobs-Sera D, Marinelli LJ, Bowman C, Broussard GW, Guerrero Bustamante C, Boyle MM, Petrova ZO, Dedrick RM, Pope WH, Science Education Alliance Phage Hunters Advancing Genomics Evolutionary Science (SEA-PHAGES) Program, Modlin RL, Hendrix RW, Hatfull GF. 2012. On the nature of mycobacteriophage diversity and host preference. Virology 434:187-201. http://dx.doi.org/10.1016/j.virol.2012.09.026.
-
(2012)
Virology
, vol.434
, pp. 187-201
-
-
Jacobs-Sera, D.1
Marinelli, L.J.2
Bowman, C.3
Broussard, G.W.4
Guerrero Bustamante, C.5
Boyle, M.M.6
Petrova, Z.O.7
Dedrick, R.M.8
Pope, W.H.9
Modlin, R.L.10
Hendrix, R.W.11
Hatfull, G.F.12
-
21
-
-
0033514996
-
Evolutionary relationships among diverse bacteriophages and prophages: all the world's a phage
-
Hendrix RW, Smith MC, Burns RN, Ford ME, Hatfull GF. 1999. Evolutionary relationships among diverse bacteriophages and prophages: all the world's a phage. Proc. Natl. Acad. Sci. U. S. A. 96:2192-2197. http://dx.doi.org/10.1073/pnas.96.5.2192.22.
-
(1999)
Proc. Natl. Acad. Sci. U. S. A.
, vol.96
, pp. 2192-2197
-
-
Hendrix, R.W.1
Smith, M.C.2
Burns, R.N.3
Ford, M.E.4
Hatfull, G.F.5
-
22
-
-
0031955116
-
Consed: a graphical tool for sequence finishing
-
Gordon D, Abajian C, Green P. 1998. Consed: a graphical tool for sequence finishing. Genome Res. 8:195-202. http://dx.doi.org/10.1101/gr.8.3.195.
-
(1998)
Genome Res.
, vol.8
, pp. 195-202
-
-
Gordon, D.1
Abajian, C.2
Green, P.3
-
23
-
-
0033485517
-
Improved microbial gene identification with GLIMMER
-
Delcher AL, Harmon D, Kasif S, White O, Salzberg SL. 1999. Improved microbial gene identification with GLIMMER. Nucleic Acids Res. 27: 4636-4641. http://dx.doi.org/10.1093/nar/27.23.4636.
-
(1999)
Nucleic Acids Res.
, vol.27
, pp. 4636-4641
-
-
Delcher, A.L.1
Harmon, D.2
Kasif, S.3
White, O.4
Salzberg, S.L.5
-
24
-
-
84857623318
-
Gene identification in prokaryotic genomes, phages, metagenomes, and EST sequences with GeneMarkS suite
-
Unit 4.5.1-17
-
Borodovsky M, Lomsadze A. 2011. Gene identification in prokaryotic genomes, phages, metagenomes, and EST sequences with GeneMarkS suite. Curr. Protocols Bioinformatics Chapter 4:Unit 4.5.1-17. http://dx.doi.org/10.1002/0471250953.bi0405s35.
-
(2011)
Curr. Protocols Bioinformatics Chapter
, vol.4
-
-
Borodovsky, M.1
Lomsadze, A.2
-
25
-
-
23144452044
-
The HHpred interactive server for protein homology detection and structure prediction
-
Soding J, Biegert A, Lupas AN. 2005. The HHpred interactive server for protein homology detection and structure prediction. Nucleic Acids Res. 33:W244-W248. http://dx.doi.org/10.1093/nar/gki408.
-
(2005)
Nucleic Acids Res.
, vol.33
-
-
Soding, J.1
Biegert, A.2
Lupas, A.N.3
-
26
-
-
80053915293
-
Phamerator: a bioinformatic tool for comparative bacteriophage genomics
-
Cresawn SG, Bogel M, Day N, Jacobs-Sera D, Hendrix RW, Hatfull GF. 2011. Phamerator: a bioinformatic tool for comparative bacteriophage genomics. BMC Bioinformatics 12:395. http://dx.doi.org/10.1186/1471-2105-12-395.
-
(2011)
BMC Bioinformatics
, vol.12
, pp. 395
-
-
Cresawn, S.G.1
Bogel, M.2
Day, N.3
Jacobs-Sera, D.4
Hendrix, R.W.5
Hatfull, G.F.6
-
27
-
-
34249734822
-
Gepard: a rapid and sensitive tool for creating dotplots on genome scale
-
Krumsiek J, Arnold R, Rattei T. 2007. Gepard: a rapid and sensitive tool for creating dotplots on genome scale. Bioinformatics 23:1026-1028. http://dx.doi.org/10.1093/bioinformatics/btm039.
-
(2007)
Bioinformatics
, vol.23
, pp. 1026-1028
-
-
Krumsiek, J.1
Arnold, R.2
Rattei, T.3
-
28
-
-
30744470609
-
Application of phylogenetic networks in evolutionary studies
-
Huson DH, Bryant D. 2006. Application of phylogenetic networks in evolutionary studies. Mol. Biol. Evol. 23:254-267. http://dx.doi.org/10.1093/molbev/msj030.
-
(2006)
Mol. Biol. Evol.
, vol.23
, pp. 254-267
-
-
Huson, D.H.1
Bryant, D.2
-
29
-
-
67849122320
-
MEME SUITE: tools for motif discovery and searching
-
Bailey TL, Boden M, Buske FA, Frith M, Grant CE, Clementi L, Ren J, Li WW, Noble WS. 2009. MEME SUITE: tools for motif discovery and searching. Nucleic Acids Res. 37:W202-W208. http://dx.doi.org/10.1093/nar/gkp335.
-
(2009)
Nucleic Acids Res.
, vol.37
-
-
Bailey, T.L.1
Boden, M.2
Buske, F.A.3
Frith, M.4
Grant, C.E.5
Clementi, L.6
Ren, J.7
Li, W.W.8
Noble, W.S.9
-
30
-
-
1242297827
-
ARAGORN, a program to detect tRNA genes and tmRNA genes in nucleotide sequences
-
Laslett D, Canback B. 2004. ARAGORN, a program to detect tRNA genes and tmRNA genes in nucleotide sequences. Nucleic Acids Res. 32:11-16. http://dx.doi.org/10.1093/nar/gkh152.
-
(2004)
Nucleic Acids Res.
, vol.32
, pp. 11-16
-
-
Laslett, D.1
Canback, B.2
-
31
-
-
0030854739
-
tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence
-
Lowe TM, Eddy SR. 1997. tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Res. 25: 955-964. http://dx.doi.org/10.1093/nar/25.5.0955.
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 955-964
-
-
Lowe, T.M.1
Eddy, S.R.2
-
32
-
-
23144460836
-
The tRNAscan-SE, snoscan and snoGPS web servers for the detection of tRNAs and snoRNAs
-
Schattner P, Brooks AN, Lowe TM. 2005. The tRNAscan-SE, snoscan and snoGPS web servers for the detection of tRNAs and snoRNAs. Nucleic Acids Res. 33:W686-W689. http://dx.doi.org/10.1093/nar/gki366.
-
(2005)
Nucleic Acids Res.
, vol.33
-
-
Schattner, P.1
Brooks, A.N.2
Lowe, T.M.3
-
33
-
-
0033562324
-
The complete genome sequence of the Streptomyces temperate phage phiC31: evolutionary relationships to other viruses
-
Smith MC, Burns RN, Wilson SE, Gregory MA. 1999. The complete genome sequence of the Streptomyces temperate phage phiC31: evolutionary relationships to other viruses. Nucleic Acids Res. 27:2145-2155. http://dx.doi.org/10.1093/nar/27.10.2145.
-
(1999)
Nucleic Acids Res.
, vol.27
, pp. 2145-2155
-
-
Smith, M.C.1
Burns, R.N.2
Wilson, S.E.3
Gregory, M.A.4
-
34
-
-
84885966536
-
Evolutionary relationships within actinophages and a putative adaptation for growth in Streptomyces spp
-
Smith MC, Hendrix RW, Dedrick R, Mitchell K, Ko CC, Russell D, Bell E, Gregory M, Bibb MJ, Pethick F, Jacobs-Sera D, Herron P, Buttner MJ, Hatfull GF. 2013. Evolutionary relationships within actinophages and a putative adaptation for growth in Streptomyces spp. J. Bacteriol. 195:4924-4935. http://dx.doi.org/10.1128/JB.00618-13.
-
(2013)
J. Bacteriol.
, vol.195
, pp. 4924-4935
-
-
Smith, M.C.1
Hendrix, R.W.2
Dedrick, R.3
Mitchell, K.4
Ko, C.C.5
Russell, D.6
Bell, E.7
Gregory, M.8
Bibb, M.J.9
Pethick, F.10
Jacobs-Sera, D.11
Herron, P.12
Buttner, M.J.13
Hatfull, G.F.14
-
35
-
-
0034536178
-
Genome organization and characterization of mycobacteriophage Bxb1
-
Mediavilla J, Jain S, Kriakov J, Ford ME, Duda RL, Jacobs WR, Jr, Hendrix RW, Hatfull GF. 2000. Genome organization and characterization of mycobacteriophage Bxb1. Mol. Microbiol. 38:955-970. http://dx.doi.org/10.1046/j.1365-2958.2000.02183.x.
-
(2000)
Mol. Microbiol.
, vol.38
, pp. 955-970
-
-
Mediavilla, J.1
Jain, S.2
Kriakov, J.3
Ford, M.E.4
Duda, R.L.5
Jacobs Jr., W.R.6
Hendrix, R.W.7
Hatfull, G.F.8
-
36
-
-
84879515171
-
Bacteriophage adhering to mucus provide a non-host-derived immunity
-
Barr JJ, Auro R, Furlan M, Whiteson KL, Erb ML, Pogliano J, Stotland A, Wolkowicz R, Cutting AS, Doran KS, Salamon P, Youle M, Rohwer F. 2013. Bacteriophage adhering to mucus provide a non-host-derived immunity. Proc. Natl. Acad. Sci. U. S. A. 110:10771-10776. http://dx.doi.org/10.1073/pnas.1305923110.
-
(2013)
Proc. Natl. Acad. Sci. U. S. A.
, vol.110
, pp. 10771-10776
-
-
Barr, J.J.1
Auro, R.2
Furlan, M.3
Whiteson, K.L.4
Erb, M.L.5
Pogliano, J.6
Stotland, A.7
Wolkowicz, R.8
Cutting, A.S.9
Doran, K.S.10
Salamon, P.11
Youle, M.12
Rohwer, F.13
-
37
-
-
33646191863
-
Ig-like domains on bacteriophages: a tale of promiscuity and deceit
-
Fraser JS, Yu Z, Maxwell KL, Davidson AR. 2006. Ig-like domains on bacteriophages: a tale of promiscuity and deceit. J. Mol. Biol. 359:496- 507. http://dx.doi.org/10.1016/j.jmb.2006.03.043.
-
(2006)
J. Mol. Biol.
, vol.359
-
-
Fraser, J.S.1
Yu, Z.2
Maxwell, K.L.3
Davidson, A.R.4
-
38
-
-
77954850130
-
The mycobacteriophage Ms6 encodes a chaperone-like protein involved in the endolysin delivery to the peptidoglycan
-
Catalao MJ, Gil F, Moniz-Pereira J, Pimentel M. 2010. The mycobacteriophage Ms6 encodes a chaperone-like protein involved in the endolysin delivery to the peptidoglycan. Mol. Microbiol. 77:672-686. http://dx.doi.org/10.1111/j.1365-2958.2010.07239.x.
-
(2010)
Mol. Microbiol.
, vol.77
, pp. 672-686
-
-
Catalao, M.J.1
Gil, F.2
Moniz-Pereira, J.3
Pimentel, M.4
-
39
-
-
84859051446
-
Mycobacteriophage endolysins: diverse and modular enzymes with multiple catalytic activities
-
Payne KM, Hatfull GF. 2012. Mycobacteriophage endolysins: diverse and modular enzymes with multiple catalytic activities. PLoS One 7:e34052. http://dx.doi.org/10.1371/journal.pone.0034052.
-
(2012)
PLoS One
, vol.7
-
-
Payne, K.M.1
Hatfull, G.F.2
-
40
-
-
0004176641
-
-
Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
-
Hendrix RW, Roberts JW, Stahl FW, Weisberg RA. 1983. Lambda II. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
-
(1983)
Lambda II
-
-
Hendrix, R.W.1
Roberts, J.W.2
Stahl, F.W.3
Weisberg, R.A.4
-
41
-
-
84876699625
-
Functional requirements for bacteriophage growth: gene essentiality and expression in mycobacteriophage Giles
-
Dedrick RM, Marinelli LJ, Newton GL, Pogliano K, Pogliano J, Hatfull GF. 2013. Functional requirements for bacteriophage growth: gene essentiality and expression in mycobacteriophage Giles. Mol. Microbiol. 88: 577-589. http://dx.doi.org/10.1111/mmi.12210.
-
(2013)
Mol. Microbiol.
, vol.88
, pp. 577-589
-
-
Dedrick, R.M.1
Marinelli, L.J.2
Newton, G.L.3
Pogliano, K.4
Pogliano, J.5
Hatfull, G.F.6
-
42
-
-
0027536476
-
Superinfection immunity of mycobacteriophage L5: applications for genetic transformation of mycobacteria
-
Donnelly-Wu MK, Jacobs WR, Jr, Hatfull GF. 1993. Superinfection immunity of mycobacteriophage L5: applications for genetic transformation of mycobacteria. Mol. Microbiol. 7:407-417. http://dx.doi.org/10.1111/j.1365-2958.1993.tb01132.x.
-
(1993)
Mol. Microbiol.
, vol.7
, pp. 407-417
-
-
Donnelly-Wu, M.K.1
Jacobs Jr., W.R.2
Hatfull, G.F.3
-
43
-
-
0036229438
-
Diversity in the serine recombinases
-
Smith MC, Thorpe HM. 2002. Diversity in the serine recombinases. Mol. Microbiol. 44:299-307. http://dx.doi.org/10.1046/j.1365-2958.2002.02891.x.
-
(2002)
Mol. Microbiol.
, vol.44
, pp. 299-307
-
-
Smith, M.C.1
Thorpe, H.M.2
-
44
-
-
15944409968
-
Integration and excision by the large serine recombinase phiRv1 integrase
-
Bibb LA, Hancox MI, Hatfull GF. 2005. Integration and excision by the large serine recombinase phiRv1 integrase. Mol. Microbiol. 55:1896- 1910. http://dx.doi.org/10.1111/j.1365-2958.2005.04517.x.
-
(2005)
Mol. Microbiol.
, vol.55
-
-
Bibb, L.A.1
Hancox, M.I.2
Hatfull, G.F.3
-
45
-
-
33745192630
-
Control of phage Bxb1 excision by a novel recombination directionality factor
-
Ghosh P, Wasil LR, Hatfull GF. 2006. Control of phage Bxb1 excision by a novel recombination directionality factor. PLoS Biol. 4:e186. http://dx.doi.org/10.1371/journal.pbio.0040186.
-
(2006)
PLoS Biol.
, vol.4
-
-
Ghosh, P.1
Wasil, L.R.2
Hatfull, G.F.3
-
46
-
-
80955178825
-
A phage protein that binds phiC31 integrase to switch its directionality
-
Khaleel T, Younger E, McEwan AR, Varghese AS, Smith MC. 2011. A phage protein that binds phiC31 integrase to switch its directionality. Mol. Microbiol. 80:1450-1463. http://dx.doi.org/10.1111/j.1365-2958.2011.07696.x.
-
(2011)
Mol. Microbiol.
, vol.80
, pp. 1450-1463
-
-
Khaleel, T.1
Younger, E.2
McEwan, A.R.3
Varghese, A.S.4
Smith, M.C.5
-
47
-
-
84856457204
-
The Bxb1 gp47 recombination directionality factor is required not only for prophage excision, but also for phage DNA replication
-
Savinov A, Pan J, Ghosh P, Hatfull GF. 2012. The Bxb1 gp47 recombination directionality factor is required not only for prophage excision, but also for phage DNA replication. Gene 495:42-48. http://dx.doi.org/10.1016/j.gene.2011.12.003.
-
(2012)
Gene
, vol.495
, pp. 42-48
-
-
Savinov, A.1
Pan, J.2
Ghosh, P.3
Hatfull, G.F.4
-
48
-
-
79953128577
-
RtcB is the RNA ligase component of an Escherichia coli RNA repair operon
-
Tanaka N, Shuman S. 2011. RtcB is the RNA ligase component of an Escherichia coli RNA repair operon. J. Biol. Chem. 286:7727-7731. http://dx.doi.org/10.1074/jbc.C111.219022.
-
(2011)
J. Biol. Chem.
, vol.286
, pp. 7727-7731
-
-
Tanaka, N.1
Shuman, S.2
-
49
-
-
0014966697
-
A recombination function essential to the growth of bacteriophage P22
-
Botstein D, Matz MJ. 1970. A recombination function essential to the growth of bacteriophage P22. J. Mol. Biol. 54:417-440. http://dx.doi.org/10.1016/0022-2836(70)90119-1.
-
(1970)
J. Mol. Biol.
, vol.54
, pp. 417-440
-
-
Botstein, D.1
Matz, M.J.2
-
50
-
-
0028800051
-
Transcriptional regulation of repressor synthesis in mycobacteriophage L5
-
Nesbit CE, Levin ME, Donnelly-Wu MK, Hatfull GF. 1995. Transcriptional regulation of repressor synthesis in mycobacteriophage L5. Mol. Microbiol. 17:1045-1056. http://dx.doi.org/10.1111/j.1365-2958.1995.mmi_17061045.x.
-
(1995)
Mol. Microbiol.
, vol.17
, pp. 1045-1056
-
-
Nesbit, C.E.1
Levin, M.E.2
Donnelly-Wu, M.K.3
Hatfull, G.F.4
-
51
-
-
0033974354
-
Anticodon nucleases
-
Kaufmann G. 2000. Anticodon nucleases. Trends Biochem. Sci. 25:70- 74. http://dx.doi.org/10.1016/S0968-0004(99)01525-X.
-
(2000)
Trends Biochem. Sci.
, vol.25
-
-
Kaufmann, G.1
-
52
-
-
41849108137
-
Phage T4 SegB protein is a homing endonuclease required for the preferred inheritance of T4 tRNA gene region occurring in co-infection with a related phage
-
Brok-Volchanskaya VS, Kadyrov FA, Sivogrivov DE, Kolosov PM, Sokolov AS, Shlyapnikov MG, Kryukov VM, Granovsky IE. 2008. Phage T4 SegB protein is a homing endonuclease required for the preferred inheritance of T4 tRNA gene region occurring in co-infection with a related phage. Nucleic Acids Res. 36:2094-2105. http://dx.doi.org/10.1093/nar/gkn053.
-
(2008)
Nucleic Acids Res.
, vol.36
, pp. 2094-2105
-
-
Brok-Volchanskaya, V.S.1
Kadyrov, F.A.2
Sivogrivov, D.E.3
Kolosov, P.M.4
Sokolov, A.S.5
Shlyapnikov, M.G.6
Kryukov, V.M.7
Granovsky, I.E.8
-
53
-
-
33846269602
-
tRNA's wobble decoding of the genome: 40 years of modification
-
Agris PF, Vendeix FA, Graham WD. 2007. tRNA's wobble decoding of the genome: 40 years of modification. J. Mol. Biol. 366:1-13. http://dx.doi.org/10.1016/j.jmb.2006.11.046.
-
(2007)
J. Mol. Biol.
, vol.366
, pp. 1-13
-
-
Agris, P.F.1
Vendeix, F.A.2
Graham, W.D.3
-
54
-
-
4444239271
-
Synonymous codon usage analysis of the mycobacteriophage Bxz1 and its plating bacteria M. smegmatis: identification of highly and lowly expressed genes of Bxz1 and the possible function of its tRNA species
-
Sahu K, Gupta SK, Ghosh TC, Sau S. 2004. Synonymous codon usage analysis of the mycobacteriophage Bxz1 and its plating bacteria M. smegmatis: identification of highly and lowly expressed genes of Bxz1 and the possible function of its tRNA species. J. Biochem. Mol. Biol. 37:487-492. http://dx.doi.org/10.5483/BMBRep.2004.37.4.487.
-
(2004)
J. Biochem. Mol. Biol.
, vol.37
, pp. 487-492
-
-
Sahu, K.1
Gupta, S.K.2
Ghosh, T.C.3
Sau, S.4
-
55
-
-
84870894497
-
Synonymous codon usage analysis of thirty two mycobacteriophage genomes
-
Hassan S, Mahalingam V, Kumar V. 2009. Synonymous codon usage analysis of thirty two mycobacteriophage genomes. Adv. Bioinformatics 2009:316936. http://dx.doi.org/10.1155/2009/316936.
-
(2009)
Adv. Bioinformatics
, vol.2009
, pp. 316936
-
-
Hassan, S.1
Mahalingam, V.2
Kumar, V.3
-
56
-
-
0034616968
-
Functional role of mycobacteriophage transfer RNAs
-
Kunisawa T. 2000. Functional role of mycobacteriophage transfer RNAs. J. Theor. Biol. 205:167-170. http://dx.doi.org/10.1006/jtbi.2000.2057.
-
(2000)
J. Theor. Biol.
, vol.205
, pp. 167-170
-
-
Kunisawa, T.1
-
57
-
-
20944451749
-
Comparative analysis of the base composition and codon usages in fourteen mycobacteriophage genomes
-
Sahu K, Gupta SK, Sau S, Ghosh TC. 2005. Comparative analysis of the base composition and codon usages in fourteen mycobacteriophage genomes. J. Biomol. Struct. Dyn. 23:63-71. http://dx.doi.org/10.1080/07391102.2005.10507047.
-
(2005)
J. Biomol. Struct. Dyn.
, vol.23
, pp. 63-71
-
-
Sahu, K.1
Gupta, S.K.2
Sau, S.3
Ghosh, T.C.4
|