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Volumn 61, Issue 3, 2014, Pages 285-307

Computational vaccinology and epitope vaccine design by immunoinformatics

Author keywords

immunoinformatics; immunology; new vaccine design

Indexed keywords

ALLERGEN; EPITOPE; VACCINE;

EID: 84907500966     PISSN: 12178950     EISSN: 15882640     Source Type: Journal    
DOI: 10.1556/AMicr.61.2014.3.4     Document Type: Article
Times cited : (37)

References (132)
  • 1
    • 61349138204 scopus 로고    scopus 로고
    • Immunome Knowledge Base (IKB): An integrated service for immunome research
    • Ortutay, C., Vihinen, M.: Immunome Knowledge Base (IKB): An integrated service for immunome research. BMC immunology 10, 3 (2009).
    • (2009) BMC Immunology , vol.10 , pp. 3
    • Ortutay, C.1    Vihinen, M.2
  • 3
    • 33645356185 scopus 로고    scopus 로고
    • Immunomics: Discovering new targets for vaccines and therapeutics
    • De Groot, A.S.: Immunomics: Discovering new targets for vaccines and therapeutics. Drug Discovery Today 11, 203-209 (2006).
    • (2006) Drug Discovery Today , vol.11 , pp. 203-209
    • De Groot, A.S.1
  • 4
    • 77956329038 scopus 로고    scopus 로고
    • Immunomics: Principles and practice
    • Grainger, D.J.: Immunomics: Principles and practice. IRTL 2, 1-6 (2004).
    • (2004) IRTL , vol.2 , pp. 1-6
    • Grainger, D.J.1
  • 6
    • 67649484376 scopus 로고    scopus 로고
    • Immunoinformatics: Current trends and future directions
    • Tong, J.C., Ren, E.C.: Immunoinformatics: Current trends and future directions. Drug Discovery Today 14, 684-689 (2009).
    • (2009) Drug Discovery Today , vol.14 , pp. 684-689
    • Tong, J.C.1    Ren, E.C.2
  • 7
    • 0000532278 scopus 로고
    • An application of the theory of probabilities to the study of a priori pathometry
    • Ross, R.: An application of the theory of probabilities to the study of a priori pathometry. Part I. Proceedings of the Royal Society of London. Series A 92, 204 (1916).
    • (1916) Part I. Proceedings of the Royal Society of London. Series A , vol.92 , pp. 204
    • Ross, R.1
  • 8
    • 66549083800 scopus 로고    scopus 로고
    • Enabling a systems biology approach to immunology: Focus on innate immunity
    • Gardy, J.L., Lynn, D.J., Brinkman, F.S.L., Hancock, R.E.W.: Enabling a systems biology approach to immunology: focus on innate immunity. Trends in Immunology 30, 249-262 (2009).
    • (2009) Trends in Immunology , vol.30 , pp. 249-262
    • Gardy, J.L.1    Lynn, D.J.2    Brinkman, F.S.L.3    Hancock, R.E.W.4
  • 9
    • 77956319457 scopus 로고    scopus 로고
    • Immunoinformatics: An integrated scenario
    • Tomar, N., De, R.K.: Immunoinformatics: An integrated scenario. Immunology 131, 153-168 (2010).
    • (2010) Immunology , vol.131 , pp. 153-168
    • Tomar, N.1    De, R.K.2
  • 10
    • 34247388467 scopus 로고    scopus 로고
    • Harnessing bioinformatics to discover new vaccines
    • Davies, M.N., Flower, D.R.: Harnessing bioinformatics to discover new vaccines. Drug Discovery Today 12, 389-395 (2007).
    • (2007) Drug Discovery Today , vol.12 , pp. 389-395
    • Davies, M.N.1    Flower, D.R.2
  • 12
    • 0034807412 scopus 로고    scopus 로고
    • The immune system and gene expression microarrays - New answers to old questions
    • Glynne, J., Watson, R.: The immune system and gene expression microarrays - New answers to old questions. The Journal of Pathology 195, 20-30 (2001).
    • (2001) The Journal of Pathology , vol.195 , pp. 20-30
    • Glynne, J.1    Watson, R.2
  • 13
    • 0032825083 scopus 로고    scopus 로고
    • Computational binding assays of antigenic peptides
    • Brusic, V., Zeleznikow, J.: Computational binding assays of antigenic peptides. Letters in Peptide Science 6, 313-324 (1999).
    • (1999) Letters in Peptide Science , vol.6 , pp. 313-324
    • Brusic, V.1    Zeleznikow, J.2
  • 14
    • 0035989345 scopus 로고    scopus 로고
    • Selection of escape mutants from immune recognition during HIV infection
    • Bernaschi, M., Castiglione, F.: Selection of escape mutants from immune recognition during HIV infection. Immunology and Cell Biology 80, 307-313 (2002).
    • (2002) Immunology and Cell Biology , vol.80 , pp. 307-313
    • Bernaschi, M.1    Castiglione, F.2
  • 15
    • 0036260304 scopus 로고    scopus 로고
    • Sequence analysis for assessing potential allergenicity
    • Gendel, S.M.: Sequence analysis for assessing potential allergenicity. Annals of the New York Academy of Sciences 964, 87-98 (2002).
    • (2002) Annals of the New York Academy of Sciences , vol.964 , pp. 87-98
    • Gendel, S.M.1
  • 16
    • 0036200078 scopus 로고    scopus 로고
    • IMGT gene identification and Colliers de Perles of human immunoglobulins with known 3D structures
    • Ruiz, M., Lefranc, M.P.: IMGT gene identification and Colliers de Perles of human immunoglobulins with known 3D structures. Immunogenetics 53, 857-883 (2001).
    • (2001) Immunogenetics , vol.53 , pp. 857-883
    • Ruiz, M.1    Lefranc, M.P.2
  • 17
    • 33646887917 scopus 로고    scopus 로고
    • Sensor molecules in intestinal innate immunity against bacterial infections
    • Eckmann, L.: Sensor molecules in intestinal innate immunity against bacterial infections. Current Opinion in Gastroenterology 22, 95-101 (2006).
    • (2006) Current Opinion in Gastroenterology , vol.22 , pp. 95-101
    • Eckmann, L.1
  • 19
    • 1142269466 scopus 로고    scopus 로고
    • Immune recognition of a human renal cancer antigen through post-translational protein splicing
    • Hanada, K., Yewdell, J.W., Yang, J.C.: Immune recognition of a human renal cancer antigen through post-translational protein splicing. Nature 427, 252-256 (2004).
    • (2004) Nature , vol.427 , pp. 252-256
    • Hanada, K.1    Yewdell, J.W.2    Yang, J.C.3
  • 23
    • 0035879184 scopus 로고    scopus 로고
    • Functional evidence that conserved TCR CDR 3 loop docking governs the cross-recognition of closely related peptide: Class i complexes
    • Messaoudi, I., LeMaoult, J., Metzner, B.M., Miley, M.J., Fremont, D.H., Nikolich-Zugich, J.: Functional evidence that conserved TCR CDR 3 loop docking governs the cross-recognition of closely related peptide: Class I complexes. The Journal of Immunology 167, 836 (2001).
    • (2001) The Journal of Immunology , vol.167 , pp. 836
    • Messaoudi, I.1    Lemaoult, J.2    Metzner, B.M.3    Miley, M.J.4    Fremont, D.H.5    Nikolich-Zugich, J.6
  • 26
    • 0030886208 scopus 로고    scopus 로고
    • Two distinct proteolytic processes in the generation of a major histocompatibility complex class I-presented peptide
    • Craiu, A., Akopian, T., Goldberg, A., Rock, K.L.: Two distinct proteolytic processes in the generation of a major histocompatibility complex class I-presented peptide. Proceedings of the National Academy of Sciences 94, 10850-10855 (1997).
    • (1997) Proceedings of the National Academy of Sciences , vol.94 , pp. 10850-10855
    • Craiu, A.1    Akopian, T.2    Goldberg, A.3    Rock, K.L.4
  • 27
    • 0031895637 scopus 로고    scopus 로고
    • Mechanisms of MHC class I-restricted antigen processing
    • Pamer, E., Cresswell, P.: Mechanisms of MHC class I-restricted antigen processing. Annual Review of Immunology 16, 323-358 (1998).
    • (1998) Annual Review of Immunology , vol.16 , pp. 323-358
    • Pamer, E.1    Cresswell, P.2
  • 28
    • 0026728457 scopus 로고
    • Emerging principles for the recognition of peptide antigens by MHC class i molecules
    • Matsumura, M., Fremont, D.H., Peterson, P.A., Wilson, I.A.: Emerging principles for the recognition of peptide antigens by MHC class I molecules. Science 257, 927-934 (1992).
    • (1992) Science , vol.257 , pp. 927-934
    • Matsumura, M.1    Fremont, D.H.2    Peterson, P.A.3    Wilson, I.A.4
  • 29
    • 0032721515 scopus 로고    scopus 로고
    • Function of the transport complex TAP in cellular immune recognition
    • Abele, R., Tampé, R.: Function of the transport complex TAP in cellular immune recognition. Biochimica et Biophysica Acta (BBA)-Biomembranes 1461, 405-419 (1999).
    • (1999) Biochimica et Biophysica Acta (BBA)-Biomembranes , vol.1461 , pp. 405-419
    • Abele, R.1    Tampé, R.2
  • 30
    • 0029062090 scopus 로고
    • An epitope-selective, transporter associated with antigen presentation (TAP)-1/2-independent pathway and a more general TAP-1/2-dependent antigen-processing pathway allow recognition of the HIV-1 envelope glycoprotein by CD8+ CTL
    • Hammond, S.A., Johnson, R.P., Kalams, S.A., Walker, B.D., Takiguchi, M., Safrit, J.T., Koup, R.A., Siliciano, R.F.: An epitope-selective, transporter associated with antigen presentation (TAP)-1/2-independent pathway and a more general TAP-1/2-dependent antigen-processing pathway allow recognition of the HIV-1 envelope glycoprotein by CD8+ CTL. The Journal of Immunology 154, 6140-6156 (1995).
    • (1995) The Journal of Immunology , vol.154 , pp. 6140-6156
    • Hammond, S.A.1    Johnson, R.P.2    Kalams, S.A.3    Walker, B.D.4    Takiguchi, M.5    Safrit, J.T.6    Koup, R.A.7    Siliciano, R.F.8
  • 34
    • 25444509811 scopus 로고    scopus 로고
    • Bcipep: A database of B-cell epitopes
    • Saha, S., Bhasin, M., Raghava, G.: Bcipep: a database of B-cell epitopes. BMC Genomics 6, 79 (2005).
    • (2005) BMC Genomics , vol.6 , pp. 79
    • Saha, S.1    Bhasin, M.2    Raghava, G.3
  • 35
    • 33746456834 scopus 로고    scopus 로고
    • CED: A conformational epitope database
    • Huang, J., Honda, W.: CED: A conformational epitope database. BMC Immunology 7, 7 (2006).
    • (2006) BMC Immunology , vol.7 , pp. 7
    • Huang, J.1    Honda, W.2
  • 39
    • 32144450782 scopus 로고    scopus 로고
    • HaptenDB: A comprehensive database of haptens, carrier proteins and anti-hapten antibodies
    • Singh, M.K., Srivastava, S., Raghava, G., Varshney, G.C.: HaptenDB: A comprehensive database of haptens, carrier proteins and anti-hapten antibodies. Bioinformatics 22, 253 (2006).
    • (2006) Bioinformatics , vol.22 , pp. 253
    • Singh, M.K.1    Srivastava, S.2    Raghava, G.3    Varshney, G.C.4
  • 42
    • 6344263941 scopus 로고    scopus 로고
    • Analysis of protein homology by assessing the (dis)similarity in protein loop regions
    • Panchenko, A.R., Madej, T.: Analysis of protein homology by assessing the (dis)similarity in protein loop regions. Proteins 57, 539-547 (2004).
    • (2004) Proteins , vol.57 , pp. 539-547
    • Panchenko, A.R.1    Madej, T.2
  • 43
    • 0036171255 scopus 로고    scopus 로고
    • SACS - Self-maintaining database of antibody crystal structure information
    • Allcorn, L.C., Martin, A.C.R.: SACS - self-maintaining database of antibody crystal structure information. Bioinformatics 18, 175 (2002).
    • (2002) Bioinformatics , vol.18 , pp. 175
    • Allcorn, L.C.1    Martin, A.C.R.2
  • 44
    • 33748254730 scopus 로고    scopus 로고
    • Prediction of continuous B cell epitopes in an antigen using recurrent neural network
    • Saha, S., Raghava, G.: Prediction of continuous B cell epitopes in an antigen using recurrent neural network. Proteins: Structure, Function, and Bioinformatics 65, 40-48 (2006).
    • (2006) Proteins: Structure, Function, and Bioinformatics , vol.65 , pp. 40-48
    • Saha, S.1    Raghava, G.2
  • 45
    • 34447265480 scopus 로고    scopus 로고
    • Characterization of antibody-binding sites on proteins: Development of a knowledge base and its applications in improving epitope prediction
    • Ghate, A., Bhagwat, B., Bhosle, S., Gadepalli, S., Kulkarni-Kale, U.: Characterization of antibody-binding sites on proteins: Development of a knowledge base and its applications in improving epitope prediction. Protein and Peptide Letters 14, 531-535 (2007).
    • (2007) Protein and Peptide Letters , vol.14 , pp. 531-535
    • Ghate, A.1    Bhagwat, B.2    Bhosle, S.3    Gadepalli, S.4    Kulkarni-Kale, U.5
  • 46
    • 35048872790 scopus 로고    scopus 로고
    • BcePred: Prediction of continuous B-cell epitopes in antigenic sequences using physico-chemical properties
    • Saha, S., Raghava, G.: BcePred: Prediction of continuous B-cell epitopes in antigenic sequences using physico-chemical properties. Artificial Immune Systems, Lecture Notes in Computer Science 3239, 197-201 (2004).
    • (2004) Artificial Immune Systems, Lecture Notes in Computer Science , vol.3239 , pp. 197-201
    • Saha, S.1    Raghava, G.2
  • 47
    • 33751104704 scopus 로고    scopus 로고
    • Improved method for predicting linear B-cell epitopes
    • Larsen, J.E.P., Lund, O., Nielsen, M.: Improved method for predicting linear B-cell epitopes. Immunome Research 2, 2 (2006).
    • (2006) Immunome Research , vol.2 , pp. 2
    • Larsen, J.E.P.1    Lund, O.2    Nielsen, M.3
  • 48
    • 0037263777 scopus 로고    scopus 로고
    • BEPITOPE: Predicting the location of continuous epitopes and patterns in proteins
    • Odorico, M., Pellequer, J.-L.: BEPITOPE: Predicting the location of continuous epitopes and patterns in proteins. Journal of Molecular Recognition 16, 20-22 (2003).
    • (2003) Journal of Molecular Recognition , vol.16 , pp. 20-22
    • Odorico, M.1    Pellequer, J.-L.2
  • 49
    • 60749128663 scopus 로고    scopus 로고
    • COBEpro: A novel system for predicting continuous B-cell epitopes
    • Sweredoski, M.J., Baldi, P.: COBEpro: A novel system for predicting continuous B-cell epitopes. Protein Engineering Design and Selection 22, 113-120 (2009).
    • (2009) Protein Engineering Design and Selection , vol.22 , pp. 113-120
    • Sweredoski, M.J.1    Baldi, P.2
  • 50
    • 20344405720 scopus 로고    scopus 로고
    • 3D-Epitope-Explorer (3DEX): Localization of conformational epitopes within three-dimensional structures of proteins
    • Schreiber, A., Humbert, M., Benz, A., Dietrich, U.: 3D-Epitope-Explorer (3DEX): Localization of conformational epitopes within three-dimensional structures of proteins. Journal of Computational Chemistry 26, 879-887 (2005).
    • (2005) Journal of Computational Chemistry , vol.26 , pp. 879-887
    • Schreiber, A.1    Humbert, M.2    Benz, A.3    Dietrich, U.4
  • 51
    • 33751099863 scopus 로고    scopus 로고
    • Prediction of residues in discontinuous B cell epitopes using protein 3D structures
    • Haste Andersen, P., Nielsen, M., Lund, O.: Prediction of residues in discontinuous B cell epitopes using protein 3D structures. Protein Science 15, 2558-2567 (2006).
    • (2006) Protein Science , vol.15 , pp. 2558-2567
    • Haste Andersen, P.1    Nielsen, M.2    Lund, O.3
  • 52
    • 33646150213 scopus 로고    scopus 로고
    • Discontinuous epitope prediction based on mimotope analysis
    • Moreau, V., Granier, C., Villard, S., Laune, D., Molina, F.: Discontinuous epitope prediction based on mimotope analysis. Bioinformatics 22, 1088-1095 (2006).
    • (2006) Bioinformatics , vol.22 , pp. 1088-1095
    • Moreau, V.1    Granier, C.2    Villard, S.3    Laune, D.4    Molina, F.5
  • 55
    • 78651292217 scopus 로고    scopus 로고
    • Allele frequency net: A database and online repository for immune gene frequencies in worldwide populations
    • Gonzalez-Galarza, F.F., Christmas, S., Middleton, D., Jones, A.R.: Allele frequency net: A database and online repository for immune gene frequencies in worldwide populations. Nucleic Acids Research 39, D913 (2011).
    • (2011) Nucleic Acids Research , vol.39 , pp. D913
    • Gonzalez-Galarza, F.F.1    Christmas, S.2    Middleton, D.3    Jones, A.R.4
  • 59
    • 0037461027 scopus 로고    scopus 로고
    • MHCBN: A comprehensive database of MHC binding and non-binding peptides
    • Bhasin, M., Singh, H., Raghava, G.: MHCBN: A comprehensive database of MHC binding and non-binding peptides. Bioinformatics 19, 665 (2003).
    • (2003) Bioinformatics , vol.19 , pp. 665
    • Bhasin, M.1    Singh, H.2    Raghava, G.3
  • 61
    • 0031811850 scopus 로고    scopus 로고
    • MHCPEP, a database of MHC-binding peptides: Update 1997
    • Brusic, V., Rudy, G., Harrison, L.C.: MHCPEP, a database of MHC-binding peptides: Update 1997. Nucleic Acids Research 26, 368-371 (1998).
    • (1998) Nucleic Acids Research , vol.26 , pp. 368-371
    • Brusic, V.1    Rudy, G.2    Harrison, L.C.3
  • 63
    • 0028052724 scopus 로고
    • Scheme for ranking potential HLA-A2 binding peptides based on independent binding of individual peptide side-chains
    • Parker, K.C., Bednarek, M.A., Coligan, J.E.: Scheme for ranking potential HLA-A2 binding peptides based on independent binding of individual peptide side-chains. The Journal of Immunology 152, 163 (1994).
    • (1994) The Journal of Immunology , vol.152 , pp. 163
    • Parker, K.C.1    Bednarek, M.A.2    Coligan, J.E.3
  • 67
    • 84907501480 scopus 로고    scopus 로고
    • Anne S. De Groot, and Hakima Sbai Brown University, Providence, Rhode Island, USA William Martin EpiVax, Inc., Providence, Rhode Island, USA
    • Sidney, J., Sette, A., Berzofsky, J.A.: Anne S. De Groot, and Hakima Sbai Brown University, Providence, Rhode Island, USA. William Martin EpiVax, Inc., Providence, Rhode Island, USA. New Generation Vaccines 344 (2004).
    • (2004) New Generation Vaccines , pp. 344
    • Sidney, J.1    Sette, A.2    Berzofsky, J.A.3
  • 68
    • 3843052528 scopus 로고    scopus 로고
    • Prediction of CTL epitopes using QM, SVM and ANN techniques
    • Bhasin, M., Raghava, G.P.S.: Prediction of CTL epitopes using QM, SVM and ANN techniques. Vaccine 22, 3195-3204 (2004).
    • (2004) Vaccine , vol.22 , pp. 3195-3204
    • Bhasin, M.1    Raghava, G.P.S.2
  • 70
    • 0037606124 scopus 로고    scopus 로고
    • ProPred1: Prediction of promiscuous MHC Class-I binding sites
    • Singh, H., Raghava, G.: ProPred1: Prediction of promiscuous MHC Class-I binding sites. Bioinformatics 19, 1009 (2003).
    • (2003) Bioinformatics , vol.19 , pp. 1009
    • Singh, H.1    Raghava, G.2
  • 71
    • 0041335442 scopus 로고    scopus 로고
    • Prediction of promiscuous and high-affinity mutated MHC binders
    • Bhasin, M., Raghava, G.P.: Prediction of promiscuous and high-affinity mutated MHC binders. Hybrid Hybridomics 22, 229-234 (2003).
    • (2003) Hybrid Hybridomics , vol.22 , pp. 229-234
    • Bhasin, M.1    Raghava, G.P.2
  • 72
    • 17844385106 scopus 로고    scopus 로고
    • The role of the proteasome in generating cytotoxic T-cell epitopes: Insights obtained from improved predictions of proteasomal cleavage
    • Nielsen, M., Lundegaard, C., Lund, O., Keómir, C.: The role of the proteasome in generating cytotoxic T-cell epitopes: Insights obtained from improved predictions of proteasomal cleavage. Immunogenetics 57, 33-41 (2005).
    • (2005) Immunogenetics , vol.57 , pp. 33-41
    • Nielsen, M.1    Lundegaard, C.2    Lund, O.3    Keómir, C.4
  • 74
  • 75
    • 23144433033 scopus 로고    scopus 로고
    • P cleavage: An SVM based method for prediction of constitutive proteasome and immunoproteasome cleavage sites in antigenic sequences
    • Bhasin, M., Raghava, G.: P cleavage: An SVM based method for prediction of constitutive proteasome and immunoproteasome cleavage sites in antigenic sequences. Nucleic Acids Research 33, W202 (2005).
    • (2005) Nucleic Acids Research , vol.33 , pp. W202
    • Bhasin, M.1    Raghava, G.2
  • 76
    • 0036137241 scopus 로고    scopus 로고
    • ProPred: Prediction of HLA-DR binding sites
    • Singh, H., Raghava, G.: ProPred: Prediction of HLA-DR binding sites. Bioinformatics 17, 1236 (2001).
    • (2001) Bioinformatics , vol.17 , pp. 1236
    • Singh, H.1    Raghava, G.2
  • 78
    • 1342268087 scopus 로고    scopus 로고
    • Analysis and prediction of affinity of TAP binding peptides using cascade SVM
    • Bhasin, M., Raghava, G.: Analysis and prediction of affinity of TAP binding peptides using cascade SVM. Protein Science 13, 596-607 (2004).
    • (2004) Protein Science , vol.13 , pp. 596-607
    • Bhasin, M.1    Raghava, G.2
  • 79
    • 0028052724 scopus 로고
    • Scheme for ranking potential HLA-A2 binding peptides based on independent binding of individual peptide side-chains
    • Parker, K.C., Bednarek, M.A., Coligan, J.E.: Scheme for ranking potential HLA-A2 binding peptides based on independent binding of individual peptide side-chains. The Journal of Immunology 152, 163-175 (1994).
    • (1994) The Journal of Immunology , vol.152 , pp. 163-175
    • Parker, K.C.1    Bednarek, M.A.2    Coligan, J.E.3
  • 84
  • 85
    • 8844259689 scopus 로고    scopus 로고
    • Predicting allergenic proteins using wavelet transform
    • Li, K.B., Issac, P., Krishnan, A.: Predicting allergenic proteins using wavelet transform. Bioinformatics 20, 2572 (2004).
    • (2004) Bioinformatics , vol.20 , pp. 2572
    • Li, K.B.1    Issac, P.2    Krishnan, A.3
  • 86
    • 42949107549 scopus 로고    scopus 로고
    • Methods and protocols for the assessment of protein allergenicity and cross-reactivity
    • Tong, J., Tammi, M.: Methods and protocols for the assessment of protein allergenicity and cross-reactivity. Frontiers in Bioscience: A Journal and Virtual Library 13, 4882 (2008).
    • (2008) Frontiers in Bioscience: A Journal and Virtual Library , vol.13 , pp. 4882
    • Tong, J.1    Tammi, M.2
  • 87
    • 33747871140 scopus 로고    scopus 로고
    • AlgPred: Prediction of allergenic proteins and mapping of IgE epitopes
    • Saha, S., Raghava, G.: AlgPred: Prediction of allergenic proteins and mapping of IgE epitopes. Nucleic Acids Research 34, W202 (2006).
    • (2006) Nucleic Acids Research , vol.34 , pp. W202
    • Saha, S.1    Raghava, G.2
  • 88
    • 77956300978 scopus 로고    scopus 로고
    • A database for allergenic proteins and tools for allergenicity prediction
    • Kim, C., Kwon, S., Lee, G., Lee, H., Choi, J., Kim, Y., Hahn, J.: A database for allergenic proteins and tools for allergenicity prediction. Bioinformation 3, 344 (2009).
    • (2009) Bioinformation , vol.3 , pp. 344
    • Kim, C.1    Kwon, S.2    Lee, G.3    Lee, H.4    Choi, J.5    Kim, Y.6    Hahn, J.7
  • 89
    • 34248357461 scopus 로고    scopus 로고
    • Allergome - A database of allergenic molecules: Structure and data implementations of a web-based resource
    • Mari, A., Mari, V., Ronconi, A.: Allergome - A database of allergenic molecules: Structure and data implementations of a web-based resource. Journal of Allergy and Clinical Immunology 115, S87 (2005).
    • (2005) Journal of Allergy and Clinical Immunology , vol.115 , pp. S87
    • Mari, A.1    Mari, V.2    Ronconi, A.3
  • 90
    • 13244265577 scopus 로고    scopus 로고
    • Allermatch, a webtool for the prediction of potential allergenicity according to current FAO/WHO Codex alimentarius guidelines
    • Fiers, M.W.E.J., Kleter, G.A., Nijland, H., Peijnenburg, A.A.C.M., Nap, J.P., Van Ham, R.C.H.J.: Allermatch, a webtool for the prediction of potential allergenicity according to current FAO/WHO Codex alimentarius guidelines. BMC Bioinformatics 5, 133 (2004).
    • (2004) BMC Bioinformatics , vol.5 , pp. 133
    • Fiers, M.W.E.J.1    Kleter, G.A.2    Nijland, H.3    Peijnenburg, A.A.C.M.4    Nap, J.P.5    Van Ham, R.C.H.J.6
  • 91
    • 84855171887 scopus 로고    scopus 로고
    • The clinical features of HBV asymptomatic carrier, and management
    • Miyasaka, A., Suzuki, K.: [The clinical features of HBV asymptomatic carrier, and management]. Nihon Rinsho 69(Suppl 4), 434-439 (2011).
    • (2011) Nihon Rinsho , vol.69 , pp. 434-439
    • Miyasaka, A.1    Suzuki, K.2
  • 93
    • 84855182325 scopus 로고    scopus 로고
    • Indications and efficacy of hepatitis B vaccines (HB vaccines) and hepatitis B immune globulin (HBIG): Current situations and problems of hepatitis B virus (HBV) infection-preventing strategies in Japan
    • Ogata, N., Funada, H., Aoyagi, Y.: [Indications and efficacy of hepatitis B vaccines (HB vaccines) and hepatitis B immune globulin (HBIG): Current situations and problems of hepatitis B virus (HBV) infection-preventing strategies in Japan]. Nihon Rinsho 69(Suppl 4), 408-416 (2011).
    • (2011) Nihon Rinsho , vol.69 , pp. 408-416
    • Ogata, N.1    Funada, H.2    Aoyagi, Y.3
  • 95
    • 84855172587 scopus 로고    scopus 로고
    • Protection from HBV infection in medical institution
    • Okuse, C., Yotsuyanagi, H.: [Protection from HBV infection in medical institution]. Nihon Rinsho 69(Suppl 4), 402-407 (2011).
    • (2011) Nihon Rinsho , vol.69 , pp. 402-407
    • Okuse, C.1    Yotsuyanagi, H.2
  • 96
    • 0037251966 scopus 로고    scopus 로고
    • SDAP: Database and computational tools for allergenic proteins
    • Ivanciuc, O., Schein, C.H., Braun, W.: SDAP: Database and computational tools for allergenic proteins. Nucleic Acids Research 31, 359 (2003).
    • (2003) Nucleic Acids Research , vol.31 , pp. 359
    • Ivanciuc, O.1    Schein, C.H.2    Braun, W.3
  • 97
    • 34250794497 scopus 로고    scopus 로고
    • ImmTree: Database of evolutionary relationships of genes and proteins in the human immune system
    • Ortutay, C., Siermala, M., Vihinen, M.: ImmTree: Database of evolutionary relationships of genes and proteins in the human immune system. Immunome Research 3, 4 (2007).
    • (2007) Immunome Research , vol.3 , pp. 4
    • Ortutay, C.1    Siermala, M.2    Vihinen, M.3
  • 98
    • 36248952693 scopus 로고    scopus 로고
    • Immunity genes and their orthologs: A multi-species database
    • Rannikko, K., Ortutay, C., Vihinen, M.: Immunity genes and their orthologs: A multi-species database. International immunology 19, 1361 (2007).
    • (2007) International Immunology , vol.19 , pp. 1361
    • Rannikko, K.1    Ortutay, C.2    Vihinen, M.3
  • 100
    • 84859931126 scopus 로고    scopus 로고
    • Precise detection of L. Monocytogenes hitting its highly conserved region possessing several specific antibody binding sites
    • Jahangiri, A., Rasooli, I., Reza Rahbar, M., Khalili, S., Amani, J., Ahmadi Zanoos, K.: Precise detection of L. monocytogenes hitting its highly conserved region possessing several specific antibody binding sites. Journal of Theoretical Biology 305, 15-23 (2012).
    • (2012) Journal of Theoretical Biology , vol.305 , pp. 15-23
    • Jahangiri, A.1    Rasooli, I.2    Reza Rahbar, M.3    Khalili, S.4    Amani, J.5    Ahmadi Zanoos, K.6
  • 101
  • 102
    • 84881228096 scopus 로고    scopus 로고
    • Immune response variations to Salmonella enterica serovar Typhi recombinant porin proteins in mice
    • Toobak, H., Rasooli, I., Talei, D., Jahangiri, A., Owlia, P., Darvish Alipour Astaneh, S.: Immune response variations to Salmonella enterica serovar Typhi recombinant porin proteins in mice. Biologicals 41, 224-230 (2013).
    • (2013) Biologicals , vol.41 , pp. 224-230
    • Toobak, H.1    Rasooli, I.2    Talei, D.3    Jahangiri, A.4    Owlia, P.5    Darvish Alipour Astaneh, S.6
  • 103
    • 73449105103 scopus 로고    scopus 로고
    • In silico analysis of chimeric espA, eae and tir fragments of Escherichia coli O 157: H 7 for oral immunogenic applications
    • Amani, J., Mousavi, S.L., Rafati, S., Salmanian, A.H.: In silico analysis of chimeric espA, eae and tir fragments of Escherichia coli O 157: H 7 for oral immunogenic applications. Theoretical Biology and Medical Modelling 6, 28 (2009).
    • (2009) Theoretical Biology and Medical Modelling , vol.6 , pp. 28
    • Amani, J.1    Mousavi, S.L.2    Rafati, S.3    Salmanian, A.H.4
  • 105
    • 79952039765 scopus 로고    scopus 로고
    • Immunogenicity of a plant-derived edible chimeric EspA, Intimin and Tir of Escherichia coli O157:H7 in mice
    • Amani, J., Mousavi, S.L., Rafati, S., Salmanian, A.H.: Immunogenicity of a plant-derived edible chimeric EspA, Intimin and Tir of Escherichia coli O157:H7 in mice. Plant Science 180, 620-627 (2011).
    • (2011) Plant Science , vol.180 , pp. 620-627
    • Amani, J.1    Mousavi, S.L.2    Rafati, S.3    Salmanian, A.H.4
  • 106
    • 84864053061 scopus 로고    scopus 로고
    • Patients with inflammatory bowel disease have a lower response rate to HBV vaccination compared to controls
    • Altunöz, M. E., Şenateş, E., Yeşil, A., Çalhan, T., Övünç, A.O.K.: Patients with inflammatory bowel disease have a lower response rate to HBV vaccination compared to controls. Digestive Diseases and Sciences 57, 1039-1044 (2012).
    • (2012) Digestive Diseases and Sciences , vol.57 , pp. 1039-1044
    • Altunöz, M.E.1    Şenateş, E.2    Yeşil, A.3    Çalhan, T.4    Övünç, A.O.K.5
  • 108
    • 33847031827 scopus 로고    scopus 로고
    • VaxiJen: A server for prediction of protective antigens, tumour antigens and subunit vaccines
    • Doytchinova, I.A., Flower, D.R.: VaxiJen: A server for prediction of protective antigens, tumour antigens and subunit vaccines. BMC Bioinformatics 8, 4 (2007).
    • (2007) BMC Bioinformatics , vol.8 , pp. 4
    • Doytchinova, I.A.1    Flower, D.R.2
  • 110
    • 33749035486 scopus 로고    scopus 로고
    • NERVE: New enhanced reverse vaccinology environment
    • Vivona, S., Bernante, F., Filippini, F.: NERVE: New enhanced reverse vaccinology environment. BMC Biotechnology 6, 35 (2006).
    • (2006) BMC Biotechnology , vol.6 , pp. 35
    • Vivona, S.1    Bernante, F.2    Filippini, F.3
  • 112
    • 71849108371 scopus 로고    scopus 로고
    • Vaxign: A web-based vaccine target design program for reverse vaccinology
    • Xiang, Z., He, Y.: Vaxign: A web-based vaccine target design program for reverse vaccinology. Procedia in Vaccinology 1, 23-29 (2009).
    • (2009) Procedia in Vaccinology , vol.1 , pp. 23-29
    • Xiang, Z.1    He, Y.2
  • 113
    • 0033046472 scopus 로고    scopus 로고
    • Immunodominance in major histocompatibility complex class I-restricted T lymphocyte responses 1
    • Yewdell, J.W., Bennink, J.R.: Immunodominance in major histocompatibility complex class I-restricted T lymphocyte responses 1. Annual Review of Immunology 17, 51-88 (1999).
    • (1999) Annual Review of Immunology , vol.17 , pp. 51-88
    • Yewdell, J.W.1    Bennink, J.R.2
  • 114
    • 0033179885 scopus 로고    scopus 로고
    • Discrete proteolytic intermediates in the MHC class i antigen processing pathway and MHC I-dependent peptide trimming in the ER
    • Paz, P., Brouwenstijn, N., Perry, R., Shastri, N.: Discrete proteolytic intermediates in the MHC class I antigen processing pathway and MHC I-dependent peptide trimming in the ER. Immunity 11, 241-251 (1999).
    • (1999) Immunity , vol.11 , pp. 241-251
    • Paz, P.1    Brouwenstijn, N.2    Perry, R.3    Shastri, N.4
  • 115
    • 0030886208 scopus 로고    scopus 로고
    • Two distinct proteolytic processes in the generation of a major histocompatibility complex class I-presented peptide
    • Craiu, A., Akopian, T., Goldberg, A., Rock, K.L.: Two distinct proteolytic processes in the generation of a major histocompatibility complex class I-presented peptide. Proc Natl Acad Sci U S A 94, 10850-10855 (1997).
    • (1997) Proc Natl Acad Sci U S A , vol.94 , pp. 10850-10855
    • Craiu, A.1    Akopian, T.2    Goldberg, A.3    Rock, K.L.4
  • 116
    • 0034723134 scopus 로고    scopus 로고
    • Sequence signals for generation of antigenic peptides by the proteasome: Implications for proteasomal cleavage mechanism
    • Altuvia, Y., Margalit, H.: Sequence signals for generation of antigenic peptides by the proteasome: Implications for proteasomal cleavage mechanism. J Mol Biol 295, 879-890 (2000).
    • (2000) J Mol Biol , vol.295 , pp. 879-890
    • Altuvia, Y.1    Margalit, H.2
  • 117
    • 0033486008 scopus 로고    scopus 로고
    • Distinct proteolytic processes generate the C and N termini of MHC class I-binding peptides
    • Mo, X., Cascio, P., Lemerise, K., Goldberg, A.L., Rock, K.: Distinct proteolytic processes generate the C and N termini of MHC class I-binding peptides. The Journal of Immunology 163, 5851-5859 (1999).
    • (1999) The Journal of Immunology , vol.163 , pp. 5851-5859
    • Mo, X.1    Cascio, P.2    Lemerise, K.3    Goldberg, A.L.4    Rock, K.5
  • 118
    • 0031771008 scopus 로고    scopus 로고
    • Generation of the vesicular stomatitis virus nucleoprotein cytotoxic T lymphocyte epitope requires proteasome-dependent and -independent proteolytic activities
    • Stoltze, L., Dick, T.P., Deeg, M., Pommerl, B., Rammensee, H.G., Schild, H.: Generation of the vesicular stomatitis virus nucleoprotein cytotoxic T lymphocyte epitope requires proteasome-dependent and -independent proteolytic activities. Eur J Immunol 28, 4029-4036 (1998).
    • (1998) Eur J Immunol , vol.28 , pp. 4029-4036
    • Stoltze, L.1    Dick, T.P.2    Deeg, M.3    Pommerl, B.4    Rammensee, H.G.5    Schild, H.6
  • 119
    • 70449338115 scopus 로고    scopus 로고
    • Systematic characterisation of cellular localisation and expression profiles of proteins containing MHC ligands
    • Juncker, A.S., Larsen, M.V., Weinhold, N., Nielsen, M., Brunak, S., Lund, O.: Systematic characterisation of cellular localisation and expression profiles of proteins containing MHC ligands. PLoS One 4, (2009).
    • (2009) PLoS One , vol.4
    • Juncker, A.S.1    Larsen, M.V.2    Weinhold, N.3    Nielsen, M.4    Brunak, S.5    Lund, O.6
  • 120
    • 0037108488 scopus 로고    scopus 로고
    • The final N-terminal trimming of a subaminoterminal proline-containing HLA class I-restricted antigenic peptide in the cytosol is mediated by two peptidases
    • Lévy, F., Burri, L., Morel, S., Peitrequin, A.L., Lévy, N., Bachi, A., Hellman, U., Van den Eynde, B.J., Servis, C.: The final N-terminal trimming of a subaminoterminal proline-containing HLA class I-restricted antigenic peptide in the cytosol is mediated by two peptidases. The Journal of Immunology 169, 4161 (2002).
    • (2002) The Journal of Immunology , vol.169 , pp. 4161
    • Lévy, F.1    Burri, L.2    Morel, S.3    Peitrequin, A.L.4    Lévy, N.5    Bachi, A.6    Hellman, U.7    Van Den Eynde, B.J.8    Servis, C.9
  • 121
    • 0035293717 scopus 로고    scopus 로고
    • The transporter associated with antigen processing (TAP): Structural integrity, expression, function, and its clinical relevance
    • Ritz, U., Seliger, B.: The transporter associated with antigen processing (TAP): Structural integrity, expression, function, and its clinical relevance. Mol Med 7, 149-158 (2001).
    • (2001) Mol Med , vol.7 , pp. 149-158
    • Ritz, U.1    Seliger, B.2
  • 122
    • 1642290656 scopus 로고    scopus 로고
    • Functional dissection of the transmembrane domains of the transporter associated with antigen processing (TAP)
    • Koch, J., Guntrum, R., Heintke, S., Kyritsis, C., Tampé, R.: Functional dissection of the transmembrane domains of the transporter associated with antigen processing (TAP). Journal of Biological Chemistry 279, 10142-10147 (2004).
    • (2004) Journal of Biological Chemistry , vol.279 , pp. 10142-10147
    • Koch, J.1    Guntrum, R.2    Heintke, S.3    Kyritsis, C.4    Tampé, R.5
  • 123
    • 0028501327 scopus 로고
    • A sequential model for peptide binding and transport by the transporters associated with antigen processing
    • van Endert, P.M., Tampe, R., Meyer, T.H., Tisch, R., Bach, J.F., McDevitt, H.O.: A sequential model for peptide binding and transport by the transporters associated with antigen processing. Immunity 1, 491-500 (1994).
    • (1994) Immunity , vol.1 , pp. 491-500
    • Van Endert, P.M.1    Tampe, R.2    Meyer, T.H.3    Tisch, R.4    Bach, J.F.5    McDevitt, H.O.6
  • 125
    • 77953149616 scopus 로고    scopus 로고
    • NetCTLpan: Pan-specific MHC class i pathway epitope predictions
    • Stranzl, T., Larsen, M.V., Lundegaard, C., Nielsen, M.: NetCTLpan: Pan-specific MHC class I pathway epitope predictions. Immunogenetics 62, 357-368 (2010).
    • (2010) Immunogenetics , vol.62 , pp. 357-368
    • Stranzl, T.1    Larsen, M.V.2    Lundegaard, C.3    Nielsen, M.4
  • 127
    • 3843052528 scopus 로고    scopus 로고
    • Prediction of CTL epitopes using QM, SVM and ANN techniques
    • Bhasin, M., Raghava, G.P.: Prediction of CTL epitopes using QM, SVM and ANN techniques. Vaccine 22, 3195-3204 (2004).
    • (2004) Vaccine , vol.22 , pp. 3195-3204
    • Bhasin, M.1    Raghava, G.P.2
  • 128
    • 23644443226 scopus 로고    scopus 로고
    • Integrated modeling of the major events in the MHC class i antigen processing pathway
    • Donnes, P., Kohlbacher, O.: Integrated modeling of the major events in the MHC class I antigen processing pathway. Protein Sci 14, 2132-2140 (2005).
    • (2005) Protein Sci , vol.14 , pp. 2132-2140
    • Donnes, P.1    Kohlbacher, O.2
  • 129
    • 33645472169 scopus 로고    scopus 로고
    • EpiJen: A server for multistep T cell epitope prediction
    • Doytchinova, I.A., Guan, P., Flower, D.R.: EpiJen: A server for multistep T cell epitope prediction. BMC Bioinformatics 7, 131 (2006).
    • (2006) BMC Bioinformatics , vol.7 , pp. 131
    • Doytchinova, I.A.1    Guan, P.2    Flower, D.R.3
  • 132
    • 26444457393 scopus 로고    scopus 로고
    • The role of computational models of the immune system in designing vaccination strategies
    • Castiglione, F., Liso, A.: The role of computational models of the immune system in designing vaccination strategies. Immunopharmacology and Immunotoxicology 27, 417-432 (2005).
    • (2005) Immunopharmacology and Immunotoxicology , vol.27 , pp. 417-432
    • Castiglione, F.1    Liso, A.2


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