-
1
-
-
61349138204
-
Immunome Knowledge Base (IKB): An integrated service for immunome research
-
Ortutay, C., Vihinen, M.: Immunome Knowledge Base (IKB): An integrated service for immunome research. BMC immunology 10, 3 (2009).
-
(2009)
BMC Immunology
, vol.10
, pp. 3
-
-
Ortutay, C.1
Vihinen, M.2
-
2
-
-
13844281356
-
A roadmap for the immunomics of category AC pathogens
-
Sette, A., Fleri, W., Peters, B., Sathiamurthy, M., Bui, H.H., Wilson, S.: A roadmap for the immunomics of category AC pathogens. Immunity 22, 155-161 (2005).
-
(2005)
Immunity
, vol.22
, pp. 155-161
-
-
Sette, A.1
Fleri, W.2
Peters, B.3
Sathiamurthy, M.4
Bui, H.H.5
Wilson, S.6
-
3
-
-
33645356185
-
Immunomics: Discovering new targets for vaccines and therapeutics
-
De Groot, A.S.: Immunomics: Discovering new targets for vaccines and therapeutics. Drug Discovery Today 11, 203-209 (2006).
-
(2006)
Drug Discovery Today
, vol.11
, pp. 203-209
-
-
De Groot, A.S.1
-
4
-
-
77956329038
-
Immunomics: Principles and practice
-
Grainger, D.J.: Immunomics: Principles and practice. IRTL 2, 1-6 (2004).
-
(2004)
IRTL
, vol.2
, pp. 1-6
-
-
Grainger, D.J.1
-
5
-
-
84889786440
-
-
Edition. John Wiley & Sons Ltd, Chichester, UK
-
Bock, G., Goode, J.: Immunoinformatics: Bioinformatic Strategies for Better Understanding of Immune Function, Edition. John Wiley & Sons Ltd, Chichester, UK, 2003.
-
(2003)
Immunoinformatics: Bioinformatic Strategies for Better Understanding of Immune Function
-
-
Bock, G.1
Goode, J.2
-
6
-
-
67649484376
-
Immunoinformatics: Current trends and future directions
-
Tong, J.C., Ren, E.C.: Immunoinformatics: Current trends and future directions. Drug Discovery Today 14, 684-689 (2009).
-
(2009)
Drug Discovery Today
, vol.14
, pp. 684-689
-
-
Tong, J.C.1
Ren, E.C.2
-
7
-
-
0000532278
-
An application of the theory of probabilities to the study of a priori pathometry
-
Ross, R.: An application of the theory of probabilities to the study of a priori pathometry. Part I. Proceedings of the Royal Society of London. Series A 92, 204 (1916).
-
(1916)
Part I. Proceedings of the Royal Society of London. Series A
, vol.92
, pp. 204
-
-
Ross, R.1
-
8
-
-
66549083800
-
Enabling a systems biology approach to immunology: Focus on innate immunity
-
Gardy, J.L., Lynn, D.J., Brinkman, F.S.L., Hancock, R.E.W.: Enabling a systems biology approach to immunology: focus on innate immunity. Trends in Immunology 30, 249-262 (2009).
-
(2009)
Trends in Immunology
, vol.30
, pp. 249-262
-
-
Gardy, J.L.1
Lynn, D.J.2
Brinkman, F.S.L.3
Hancock, R.E.W.4
-
9
-
-
77956319457
-
Immunoinformatics: An integrated scenario
-
Tomar, N., De, R.K.: Immunoinformatics: An integrated scenario. Immunology 131, 153-168 (2010).
-
(2010)
Immunology
, vol.131
, pp. 153-168
-
-
Tomar, N.1
De, R.K.2
-
10
-
-
34247388467
-
Harnessing bioinformatics to discover new vaccines
-
Davies, M.N., Flower, D.R.: Harnessing bioinformatics to discover new vaccines. Drug Discovery Today 12, 389-395 (2007).
-
(2007)
Drug Discovery Today
, vol.12
, pp. 389-395
-
-
Davies, M.N.1
Flower, D.R.2
-
11
-
-
0034697342
-
Molecular immunology databases and data repositories
-
Brusic, V., Zeleznikow, J., Petrovsky, N.: Molecular immunology databases and data repositories. Journal of Immunological Methods 238, 17-28 (2000).
-
(2000)
Journal of Immunological Methods
, vol.238
, pp. 17-28
-
-
Brusic, V.1
Zeleznikow, J.2
Petrovsky, N.3
-
12
-
-
0034807412
-
The immune system and gene expression microarrays - New answers to old questions
-
Glynne, J., Watson, R.: The immune system and gene expression microarrays - New answers to old questions. The Journal of Pathology 195, 20-30 (2001).
-
(2001)
The Journal of Pathology
, vol.195
, pp. 20-30
-
-
Glynne, J.1
Watson, R.2
-
13
-
-
0032825083
-
Computational binding assays of antigenic peptides
-
Brusic, V., Zeleznikow, J.: Computational binding assays of antigenic peptides. Letters in Peptide Science 6, 313-324 (1999).
-
(1999)
Letters in Peptide Science
, vol.6
, pp. 313-324
-
-
Brusic, V.1
Zeleznikow, J.2
-
14
-
-
0035989345
-
Selection of escape mutants from immune recognition during HIV infection
-
Bernaschi, M., Castiglione, F.: Selection of escape mutants from immune recognition during HIV infection. Immunology and Cell Biology 80, 307-313 (2002).
-
(2002)
Immunology and Cell Biology
, vol.80
, pp. 307-313
-
-
Bernaschi, M.1
Castiglione, F.2
-
15
-
-
0036260304
-
Sequence analysis for assessing potential allergenicity
-
Gendel, S.M.: Sequence analysis for assessing potential allergenicity. Annals of the New York Academy of Sciences 964, 87-98 (2002).
-
(2002)
Annals of the New York Academy of Sciences
, vol.964
, pp. 87-98
-
-
Gendel, S.M.1
-
16
-
-
0036200078
-
IMGT gene identification and Colliers de Perles of human immunoglobulins with known 3D structures
-
Ruiz, M., Lefranc, M.P.: IMGT gene identification and Colliers de Perles of human immunoglobulins with known 3D structures. Immunogenetics 53, 857-883 (2001).
-
(2001)
Immunogenetics
, vol.53
, pp. 857-883
-
-
Ruiz, M.1
Lefranc, M.P.2
-
17
-
-
33646887917
-
Sensor molecules in intestinal innate immunity against bacterial infections
-
Eckmann, L.: Sensor molecules in intestinal innate immunity against bacterial infections. Current Opinion in Gastroenterology 22, 95-101 (2006).
-
(2006)
Current Opinion in Gastroenterology
, vol.22
, pp. 95-101
-
-
Eckmann, L.1
-
18
-
-
33745608737
-
Immunoinformatics comes of age
-
Korber, B., LaBute, M., Yusim, K.: Immunoinformatics comes of age. PLoS Computational Biology 2, e71 (2006).
-
(2006)
PLoS Computational Biology
, vol.2
, pp. e71
-
-
Korber, B.1
Labute, M.2
Yusim, K.3
-
19
-
-
1142269466
-
Immune recognition of a human renal cancer antigen through post-translational protein splicing
-
Hanada, K., Yewdell, J.W., Yang, J.C.: Immune recognition of a human renal cancer antigen through post-translational protein splicing. Nature 427, 252-256 (2004).
-
(2004)
Nature
, vol.427
, pp. 252-256
-
-
Hanada, K.1
Yewdell, J.W.2
Yang, J.C.3
-
20
-
-
0003807468
-
-
Garland Science, New York, USA and London, UK
-
Janeway, C., Travers, P., Walport, M., Shlomchick, M.: Immunobiology, 2005. Garland Science, New York, USA and London, UK.
-
(2005)
Immunobiology
-
-
Janeway, C.1
Travers, P.2
Walport, M.3
Shlomchick, M.4
-
21
-
-
33646181088
-
How TCRs bind MHCs, peptides, and coreceptors
-
Rudolph, M.G., Stanfield, R.L., Wilson, I.A.: How TCRs bind MHCs, peptides, and coreceptors. Annu Rev Immunol 24, 419-466 (2006).
-
(2006)
Annu Rev Immunol
, vol.24
, pp. 419-466
-
-
Rudolph, M.G.1
Stanfield, R.L.2
Wilson, I.A.3
-
23
-
-
0035879184
-
Functional evidence that conserved TCR CDR 3 loop docking governs the cross-recognition of closely related peptide: Class i complexes
-
Messaoudi, I., LeMaoult, J., Metzner, B.M., Miley, M.J., Fremont, D.H., Nikolich-Zugich, J.: Functional evidence that conserved TCR CDR 3 loop docking governs the cross-recognition of closely related peptide: Class I complexes. The Journal of Immunology 167, 836 (2001).
-
(2001)
The Journal of Immunology
, vol.167
, pp. 836
-
-
Messaoudi, I.1
Lemaoult, J.2
Metzner, B.M.3
Miley, M.J.4
Fremont, D.H.5
Nikolich-Zugich, J.6
-
24
-
-
0026016697
-
Characterization of a conserved T cell epitope in HIV-1 gp41 recognized by vaccine-induced human cytolytic T cells
-
Hammond, S.A., Obah, E., Stanhope, P., Monell, C.R., Strand, M., Robbins, F., Bias, W.B., Karr, R.W., Koenig, S., Siliciano, R.: Characterization of a conserved T cell epitope in HIV-1 gp41 recognized by vaccine-induced human cytolytic T cells. The Journal of Immunology 146, 1470 (1991).
-
(1991)
The Journal of Immunology
, vol.146
, pp. 1470
-
-
Hammond, S.A.1
Obah, E.2
Stanhope, P.3
Monell, C.R.4
Strand, M.5
Robbins, F.6
Bias, W.B.7
Karr, R.W.8
Koenig, S.9
Siliciano, R.10
-
25
-
-
0028219791
-
Cytotoxicity mediated by T cells and natural killer cells is greatly impaired in perforin-deficient mice
-
Kagi, D., Ledermann, B., Burki, K., Seiler, P., Odermatt, B., Olsen, K., Podack, E., Zinkernagel, R., Hengartner, H.: Cytotoxicity mediated by T cells and natural killer cells is greatly impaired in perforin-deficient mice. Nature 369, 31-36 (1994).
-
(1994)
Nature
, vol.369
, pp. 31-36
-
-
Kagi, D.1
Ledermann, B.2
Burki, K.3
Seiler, P.4
Odermatt, B.5
Olsen, K.6
Podack, E.7
Zinkernagel, R.8
Hengartner, H.9
-
26
-
-
0030886208
-
Two distinct proteolytic processes in the generation of a major histocompatibility complex class I-presented peptide
-
Craiu, A., Akopian, T., Goldberg, A., Rock, K.L.: Two distinct proteolytic processes in the generation of a major histocompatibility complex class I-presented peptide. Proceedings of the National Academy of Sciences 94, 10850-10855 (1997).
-
(1997)
Proceedings of the National Academy of Sciences
, vol.94
, pp. 10850-10855
-
-
Craiu, A.1
Akopian, T.2
Goldberg, A.3
Rock, K.L.4
-
27
-
-
0031895637
-
Mechanisms of MHC class I-restricted antigen processing
-
Pamer, E., Cresswell, P.: Mechanisms of MHC class I-restricted antigen processing. Annual Review of Immunology 16, 323-358 (1998).
-
(1998)
Annual Review of Immunology
, vol.16
, pp. 323-358
-
-
Pamer, E.1
Cresswell, P.2
-
28
-
-
0026728457
-
Emerging principles for the recognition of peptide antigens by MHC class i molecules
-
Matsumura, M., Fremont, D.H., Peterson, P.A., Wilson, I.A.: Emerging principles for the recognition of peptide antigens by MHC class I molecules. Science 257, 927-934 (1992).
-
(1992)
Science
, vol.257
, pp. 927-934
-
-
Matsumura, M.1
Fremont, D.H.2
Peterson, P.A.3
Wilson, I.A.4
-
29
-
-
0032721515
-
Function of the transport complex TAP in cellular immune recognition
-
Abele, R., Tampé, R.: Function of the transport complex TAP in cellular immune recognition. Biochimica et Biophysica Acta (BBA)-Biomembranes 1461, 405-419 (1999).
-
(1999)
Biochimica et Biophysica Acta (BBA)-Biomembranes
, vol.1461
, pp. 405-419
-
-
Abele, R.1
Tampé, R.2
-
30
-
-
0029062090
-
An epitope-selective, transporter associated with antigen presentation (TAP)-1/2-independent pathway and a more general TAP-1/2-dependent antigen-processing pathway allow recognition of the HIV-1 envelope glycoprotein by CD8+ CTL
-
Hammond, S.A., Johnson, R.P., Kalams, S.A., Walker, B.D., Takiguchi, M., Safrit, J.T., Koup, R.A., Siliciano, R.F.: An epitope-selective, transporter associated with antigen presentation (TAP)-1/2-independent pathway and a more general TAP-1/2-dependent antigen-processing pathway allow recognition of the HIV-1 envelope glycoprotein by CD8+ CTL. The Journal of Immunology 154, 6140-6156 (1995).
-
(1995)
The Journal of Immunology
, vol.154
, pp. 6140-6156
-
-
Hammond, S.A.1
Johnson, R.P.2
Kalams, S.A.3
Walker, B.D.4
Takiguchi, M.5
Safrit, J.T.6
Koup, R.A.7
Siliciano, R.F.8
-
31
-
-
20944447214
-
The immune epitope database and analysis resource: From vision to blueprint
-
Peters, B., Sidney, J., Bourne, P., Bui, H.H., Buus, S., Doh, G., Fleri, W., Kronenberg, M., Kubo, R., Lund, O.: The immune epitope database and analysis resource: from vision to blueprint. PLoS biology 3, e91 (2005).
-
(2005)
PLoS Biology
, vol.3
, pp. e91
-
-
Peters, B.1
Sidney, J.2
Bourne, P.3
Bui, H.H.4
Buus, S.5
Doh, G.6
Fleri, W.7
Kronenberg, M.8
Kubo, R.9
Lund, O.10
-
33
-
-
28544438391
-
AntiJen: A quantitative immunology database integrating functional, thermodynamic, kinetic, biophysical, and cellular data
-
Toseland, C., Clayton, D., McSparron, H., Hemsley, S., Blythe, M., Paine, K., Doytchinova, I., Guan, P., Hattotuwagama, C., Flower, D.: AntiJen: A quantitative immunology database integrating functional, thermodynamic, kinetic, biophysical, and cellular data. Immunome Res 1, 4 (2005).
-
(2005)
Immunome Res
, vol.1
, pp. 4
-
-
Toseland, C.1
Clayton, D.2
McSparron, H.3
Hemsley, S.4
Blythe, M.5
Paine, K.6
Doytchinova, I.7
Guan, P.8
Hattotuwagama, C.9
Flower, D.10
-
34
-
-
25444509811
-
Bcipep: A database of B-cell epitopes
-
Saha, S., Bhasin, M., Raghava, G.: Bcipep: a database of B-cell epitopes. BMC Genomics 6, 79 (2005).
-
(2005)
BMC Genomics
, vol.6
, pp. 79
-
-
Saha, S.1
Bhasin, M.2
Raghava, G.3
-
35
-
-
33746456834
-
CED: A conformational epitope database
-
Huang, J., Honda, W.: CED: A conformational epitope database. BMC Immunology 7, 7 (2006).
-
(2006)
BMC Immunology
, vol.7
, pp. 7
-
-
Huang, J.1
Honda, W.2
-
36
-
-
33644873221
-
Epitome: Database of structure-inferred antigenic epitopes
-
Schlessinger, A., Ofran, Y., Yachdav, G., Rost, B.: Epitome: Database of structure-inferred antigenic epitopes. Nucleic Acids Research 34, D777 (2006).
-
(2006)
Nucleic Acids Research
, vol.34
, pp. D777
-
-
Schlessinger, A.1
Ofran, Y.2
Yachdav, G.3
Rost, B.4
-
37
-
-
75549084463
-
The immune epitope database 2.0
-
Vita, R., Zarebski, L., Greenbaum, J.A., Emami, H., Hoof, I., Salimi, N., Damle, R., Sette, A., Peters, B.: The immune epitope database 2.0. Nucleic Acids Res 38, D854-D862 (2010).
-
(2010)
Nucleic Acids Res
, vol.38
, pp. D854-D862
-
-
Vita, R.1
Zarebski, L.2
Greenbaum, J.A.3
Emami, H.4
Hoof, I.5
Salimi, N.6
Damle, R.7
Sette, A.8
Peters, B.9
-
38
-
-
58149316094
-
IMGT®, the international ImMunoGeneTics information system®
-
Lefranc, M.P., Giudicelli, V., Ginestoux, C., Jabado-Michaloud, J., Folch, G., Bellahcene, F., Wu, Y., Gemrot, E., Brochet, X., Lane, J.: IMGT®, the international ImMunoGeneTics information system®. Nucleic Acids Research 37, D1006 (2009).
-
(2009)
Nucleic Acids Research
, vol.37
, pp. D1006
-
-
Lefranc, M.P.1
Giudicelli, V.2
Ginestoux, C.3
Jabado-Michaloud, J.4
Folch, G.5
Bellahcene, F.6
Wu, Y.7
Gemrot, E.8
Brochet, X.9
Lane, J.10
-
39
-
-
32144450782
-
HaptenDB: A comprehensive database of haptens, carrier proteins and anti-hapten antibodies
-
Singh, M.K., Srivastava, S., Raghava, G., Varshney, G.C.: HaptenDB: A comprehensive database of haptens, carrier proteins and anti-hapten antibodies. Bioinformatics 22, 253 (2006).
-
(2006)
Bioinformatics
, vol.22
, pp. 253
-
-
Singh, M.K.1
Srivastava, S.2
Raghava, G.3
Varshney, G.C.4
-
40
-
-
77951600179
-
-
Los Alamos National Laboratory Theoretical Biology and Biophysics, Los Alamos, NM
-
Yusim, K., Korber, B., Brander, C., Haynes, B., Koup, R., Moore, J., Walker, B., Watkins, D.: HIV Molecular Immunology 2009. Los Alamos National Laboratory, Theoretical Biology and Biophysics, Los Alamos, NM, 2009.
-
(2009)
HIV Molecular Immunology 2009
-
-
Yusim, K.1
Korber, B.2
Brander, C.3
Haynes, B.4
Koup, R.5
Moore, J.6
Walker, B.7
Watkins, D.8
-
41
-
-
28444473437
-
Los Alamos hepatitis C immunology database
-
Yusim, K., Richardson, R., Tao, N., Dalwani, A., Agrawal, A., Szinger, J., Funkhouser, R., Korber, B., Kuiken, C.: Los Alamos hepatitis C immunology database. Applied Bioinformatics 4, 217-225 (2005).
-
(2005)
Applied Bioinformatics
, vol.4
, pp. 217-225
-
-
Yusim, K.1
Richardson, R.2
Tao, N.3
Dalwani, A.4
Agrawal, A.5
Szinger, J.6
Funkhouser, R.7
Korber, B.8
Kuiken, C.9
-
42
-
-
6344263941
-
Analysis of protein homology by assessing the (dis)similarity in protein loop regions
-
Panchenko, A.R., Madej, T.: Analysis of protein homology by assessing the (dis)similarity in protein loop regions. Proteins 57, 539-547 (2004).
-
(2004)
Proteins
, vol.57
, pp. 539-547
-
-
Panchenko, A.R.1
Madej, T.2
-
43
-
-
0036171255
-
SACS - Self-maintaining database of antibody crystal structure information
-
Allcorn, L.C., Martin, A.C.R.: SACS - self-maintaining database of antibody crystal structure information. Bioinformatics 18, 175 (2002).
-
(2002)
Bioinformatics
, vol.18
, pp. 175
-
-
Allcorn, L.C.1
Martin, A.C.R.2
-
44
-
-
33748254730
-
Prediction of continuous B cell epitopes in an antigen using recurrent neural network
-
Saha, S., Raghava, G.: Prediction of continuous B cell epitopes in an antigen using recurrent neural network. Proteins: Structure, Function, and Bioinformatics 65, 40-48 (2006).
-
(2006)
Proteins: Structure, Function, and Bioinformatics
, vol.65
, pp. 40-48
-
-
Saha, S.1
Raghava, G.2
-
45
-
-
34447265480
-
Characterization of antibody-binding sites on proteins: Development of a knowledge base and its applications in improving epitope prediction
-
Ghate, A., Bhagwat, B., Bhosle, S., Gadepalli, S., Kulkarni-Kale, U.: Characterization of antibody-binding sites on proteins: Development of a knowledge base and its applications in improving epitope prediction. Protein and Peptide Letters 14, 531-535 (2007).
-
(2007)
Protein and Peptide Letters
, vol.14
, pp. 531-535
-
-
Ghate, A.1
Bhagwat, B.2
Bhosle, S.3
Gadepalli, S.4
Kulkarni-Kale, U.5
-
46
-
-
35048872790
-
BcePred: Prediction of continuous B-cell epitopes in antigenic sequences using physico-chemical properties
-
Saha, S., Raghava, G.: BcePred: Prediction of continuous B-cell epitopes in antigenic sequences using physico-chemical properties. Artificial Immune Systems, Lecture Notes in Computer Science 3239, 197-201 (2004).
-
(2004)
Artificial Immune Systems, Lecture Notes in Computer Science
, vol.3239
, pp. 197-201
-
-
Saha, S.1
Raghava, G.2
-
47
-
-
33751104704
-
Improved method for predicting linear B-cell epitopes
-
Larsen, J.E.P., Lund, O., Nielsen, M.: Improved method for predicting linear B-cell epitopes. Immunome Research 2, 2 (2006).
-
(2006)
Immunome Research
, vol.2
, pp. 2
-
-
Larsen, J.E.P.1
Lund, O.2
Nielsen, M.3
-
48
-
-
0037263777
-
BEPITOPE: Predicting the location of continuous epitopes and patterns in proteins
-
Odorico, M., Pellequer, J.-L.: BEPITOPE: Predicting the location of continuous epitopes and patterns in proteins. Journal of Molecular Recognition 16, 20-22 (2003).
-
(2003)
Journal of Molecular Recognition
, vol.16
, pp. 20-22
-
-
Odorico, M.1
Pellequer, J.-L.2
-
50
-
-
20344405720
-
3D-Epitope-Explorer (3DEX): Localization of conformational epitopes within three-dimensional structures of proteins
-
Schreiber, A., Humbert, M., Benz, A., Dietrich, U.: 3D-Epitope-Explorer (3DEX): Localization of conformational epitopes within three-dimensional structures of proteins. Journal of Computational Chemistry 26, 879-887 (2005).
-
(2005)
Journal of Computational Chemistry
, vol.26
, pp. 879-887
-
-
Schreiber, A.1
Humbert, M.2
Benz, A.3
Dietrich, U.4
-
51
-
-
33751099863
-
Prediction of residues in discontinuous B cell epitopes using protein 3D structures
-
Haste Andersen, P., Nielsen, M., Lund, O.: Prediction of residues in discontinuous B cell epitopes using protein 3D structures. Protein Science 15, 2558-2567 (2006).
-
(2006)
Protein Science
, vol.15
, pp. 2558-2567
-
-
Haste Andersen, P.1
Nielsen, M.2
Lund, O.3
-
52
-
-
33646150213
-
Discontinuous epitope prediction based on mimotope analysis
-
Moreau, V., Granier, C., Villard, S., Laune, D., Molina, F.: Discontinuous epitope prediction based on mimotope analysis. Bioinformatics 22, 1088-1095 (2006).
-
(2006)
Bioinformatics
, vol.22
, pp. 1088-1095
-
-
Moreau, V.1
Granier, C.2
Villard, S.3
Laune, D.4
Molina, F.5
-
53
-
-
33750341091
-
MIMOX: A web tool for phage display based epitope mapping
-
Huang, J., Gutteridge, A., Honda, W., Kanehisa, M.: MIMOX: A web tool for phage display based epitope mapping. BMC Bioinformatics 7, 451 (2006).
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 451
-
-
Huang, J.1
Gutteridge, A.2
Honda, W.3
Kanehisa, M.4
-
54
-
-
36549031650
-
Pepitope: Epitope mapping from affinity-selected peptides
-
Mayrose, I., Penn, O., Erez, E., Rubinstein, N.D., Shlomi, T., Freund, N.T., Bublil, E.M., Ruppin, E., Sharan, R., Gershoni, J.M., Martz, E., Pupko, T.: Pepitope: Epitope mapping from affinity-selected peptides. Bioinformatics (Oxford, England) 23, 3244-3246 (2007).
-
(2007)
Bioinformatics (Oxford, England)
, vol.23
, pp. 3244-3246
-
-
Mayrose, I.1
Penn, O.2
Erez, E.3
Rubinstein, N.D.4
Shlomi, T.5
Freund, N.T.6
Bublil, E.M.7
Ruppin, E.8
Sharan, R.9
Gershoni, J.M.10
Martz, E.11
Pupko, T.12
-
55
-
-
78651292217
-
Allele frequency net: A database and online repository for immune gene frequencies in worldwide populations
-
Gonzalez-Galarza, F.F., Christmas, S., Middleton, D., Jones, A.R.: Allele frequency net: A database and online repository for immune gene frequencies in worldwide populations. Nucleic Acids Research 39, D913 (2011).
-
(2011)
Nucleic Acids Research
, vol.39
, pp. D913
-
-
Gonzalez-Galarza, F.F.1
Christmas, S.2
Middleton, D.3
Jones, A.R.4
-
56
-
-
18444384216
-
Database resources of the National Center for Biotechnology Information: 2002 update
-
Wheeler, D.L., Church, D.M., Lash, A.E., Leipe, D.D., Madden, T.L., Pontius, J.U., Schuler, G.D., Schriml, L.M., Tatusova, T.A., Wagner, L., Rapp, B.A.: Database resources of the National Center for Biotechnology Information: 2002 update. Nucleic Acids Res 30, 13-16 (2002).
-
(2002)
Nucleic Acids Res
, vol.30
, pp. 13-16
-
-
Wheeler, D.L.1
Church, D.M.2
Lash, A.E.3
Leipe, D.D.4
Madden, T.L.5
Pontius, J.U.6
Schuler, G.D.7
Schriml, L.M.8
Tatusova, T.A.9
Wagner, L.10
Rapp, B.A.11
-
57
-
-
70349980882
-
FRED - A framework for T-cell epitope detection
-
Feldhahn, M., Dönnes, P., Thiel, P., Kohlbacher, O.: FRED - A framework for T-cell epitope detection. Bioinformatics 25, 2758-2759 (2009).
-
(2009)
Bioinformatics
, vol.25
, pp. 2758-2759
-
-
Feldhahn, M.1
Dönnes, P.2
Thiel, P.3
Kohlbacher, O.4
-
58
-
-
0043201399
-
JenPep: A novel computational information resource for immunobiology and vaccinology
-
McSparron, H., Blythe, M.J., Zygouri, C., Doytchinova, I.A., Flower, D.R.: JenPep: A novel computational information resource for immunobiology and vaccinology. Journal of Chemical Information and Computer Sciences 43, 1276-1287 (2003).
-
(2003)
Journal of Chemical Information and Computer Sciences
, vol.43
, pp. 1276-1287
-
-
McSparron, H.1
Blythe, M.J.2
Zygouri, C.3
Doytchinova, I.A.4
Flower, D.R.5
-
59
-
-
0037461027
-
MHCBN: A comprehensive database of MHC binding and non-binding peptides
-
Bhasin, M., Singh, H., Raghava, G.: MHCBN: A comprehensive database of MHC binding and non-binding peptides. Bioinformatics 19, 665 (2003).
-
(2003)
Bioinformatics
, vol.19
, pp. 665
-
-
Bhasin, M.1
Singh, H.2
Raghava, G.3
-
60
-
-
38349100266
-
Variation analysis and gene annotation of eight MHC haplotypes: The MHC Haplotype Project
-
Horton, R., Gibson, R., Coggill, P., Miretti, M., Allcock, R., Almeida, J., Forbes, S., Gilbert, J., Halls, K., Harrow, J., Hart, E., Howe, K., Jackson, D., Palmer, S., Roberts, A., Sims, S., Stewart, C., Traherne, J., Trevanion, S., Wilming, L., Rogers, J., de Jong, P., Elliott, J., Sawcer, S., Todd, J., Trowsdale, J., Beck, S.: Variation analysis and gene annotation of eight MHC haplotypes: The MHC Haplotype Project. Immunogenetics 60, 1-18 (2008).
-
(2008)
Immunogenetics
, vol.60
, pp. 1-18
-
-
Horton, R.1
Gibson, R.2
Coggill, P.3
Miretti, M.4
Allcock, R.5
Almeida, J.6
Forbes, S.7
Gilbert, J.8
Halls, K.9
Harrow, J.10
Hart, E.11
Howe, K.12
Jackson, D.13
Palmer, S.14
Roberts, A.15
Sims, S.16
Stewart, C.17
Traherne, J.18
Trevanion, S.19
Wilming, L.20
Rogers, J.21
De Jong, P.22
Elliott, J.23
Sawcer, S.24
Todd, J.25
Trowsdale, J.26
Beck, S.27
more..
-
61
-
-
0031811850
-
MHCPEP, a database of MHC-binding peptides: Update 1997
-
Brusic, V., Rudy, G., Harrison, L.C.: MHCPEP, a database of MHC-binding peptides: Update 1997. Nucleic Acids Research 26, 368-371 (1998).
-
(1998)
Nucleic Acids Research
, vol.26
, pp. 368-371
-
-
Brusic, V.1
Rudy, G.2
Harrison, L.C.3
-
62
-
-
0033388725
-
SYFPEITHI: Database for MHC ligands and peptide motifs
-
Rammensee, H.G., Bachmann, J., Emmerich, N.P.N., Bachor, O.A., Stevanovi, S.: SYFPEITHI: Database for MHC ligands and peptide motifs. Immunogenetics 50, 213-219 (1999).
-
(1999)
Immunogenetics
, vol.50
, pp. 213-219
-
-
Rammensee, H.G.1
Bachmann, J.2
Emmerich, N.P.N.3
Bachor, O.A.4
Stevanovi, S.5
-
63
-
-
0028052724
-
Scheme for ranking potential HLA-A2 binding peptides based on independent binding of individual peptide side-chains
-
Parker, K.C., Bednarek, M.A., Coligan, J.E.: Scheme for ranking potential HLA-A2 binding peptides based on independent binding of individual peptide side-chains. The Journal of Immunology 152, 163 (1994).
-
(1994)
The Journal of Immunology
, vol.152
, pp. 163
-
-
Parker, K.C.1
Bednarek, M.A.2
Coligan, J.E.3
-
64
-
-
58049187138
-
ElliPro: A new structure-based tool for the prediction of antibody epitopes
-
Ponomarenko, J., Bui, H.H., Li, W., Fusseder, N., Bourne, P.E., Sette, A., Peters, B.: ElliPro: A new structure-based tool for the prediction of antibody epitopes. BMC Bioinformatics 9, 514 (2008).
-
(2008)
BMC Bioinformatics
, vol.9
, pp. 514
-
-
Ponomarenko, J.1
Bui, H.H.2
Li, W.3
Fusseder, N.4
Bourne, P.E.5
Sette, A.6
Peters, B.7
-
65
-
-
0041620259
-
MHCPred: A server for quantitative prediction of peptide-MHC binding
-
Guan, P., Doytchinova, I.A., Zygouri, C., Flower, D.R.: MHCPred: A server for quantitative prediction of peptide-MHC binding. Nucleic acids research 31, 3621 (2003).
-
(2003)
Nucleic Acids Research
, vol.31
, pp. 3621
-
-
Guan, P.1
Doytchinova, I.A.2
Zygouri, C.3
Flower, D.R.4
-
66
-
-
48449105929
-
EpiToolKit - A web server for computational immunomics
-
Feldhahn, M., Thiel, P., Schuler, M.M., Hillen, N., Stevanovi, S., Rammensee, H.G., Kohlbacher, O.: EpiToolKit - a web server for computational immunomics. Nucleic Acids Research 36, W519 (2008).
-
(2008)
Nucleic Acids Research
, vol.36
, pp. W519
-
-
Feldhahn, M.1
Thiel, P.2
Schuler, M.M.3
Hillen, N.4
Stevanovi, S.5
Rammensee, H.G.6
Kohlbacher, O.7
-
67
-
-
84907501480
-
-
Anne S. De Groot, and Hakima Sbai Brown University, Providence, Rhode Island, USA William Martin EpiVax, Inc., Providence, Rhode Island, USA
-
Sidney, J., Sette, A., Berzofsky, J.A.: Anne S. De Groot, and Hakima Sbai Brown University, Providence, Rhode Island, USA. William Martin EpiVax, Inc., Providence, Rhode Island, USA. New Generation Vaccines 344 (2004).
-
(2004)
New Generation Vaccines
, pp. 344
-
-
Sidney, J.1
Sette, A.2
Berzofsky, J.A.3
-
68
-
-
3843052528
-
Prediction of CTL epitopes using QM, SVM and ANN techniques
-
Bhasin, M., Raghava, G.P.S.: Prediction of CTL epitopes using QM, SVM and ANN techniques. Vaccine 22, 3195-3204 (2004).
-
(2004)
Vaccine
, vol.22
, pp. 3195-3204
-
-
Bhasin, M.1
Raghava, G.P.S.2
-
69
-
-
83255164269
-
Long-term outcome of primary non-responders to tenofovir therapy in HIV/HBV-co-infected patients: Impact of HBV genotype G
-
Lada, O., Gervais, A., Branger, M., Peytavin, G., Roquebert, B., Collin, G., Fraqueiro, G., Moucari, R., Hamet, G., Martinot-Peignoux, M., Matheron, S., Marcellin, P.: Long-term outcome of primary non-responders to tenofovir therapy in HIV/HBV-co-infected patients: Impact of HBV genotype G. Liver Int 32, 93-101 (2012).
-
(2012)
Liver Int
, vol.32
, pp. 93-101
-
-
Lada, O.1
Gervais, A.2
Branger, M.3
Peytavin, G.4
Roquebert, B.5
Collin, G.6
Fraqueiro, G.7
Moucari, R.8
Hamet, G.9
Martinot-Peignoux, M.10
Matheron, S.11
Marcellin, P.12
-
70
-
-
0037606124
-
ProPred1: Prediction of promiscuous MHC Class-I binding sites
-
Singh, H., Raghava, G.: ProPred1: Prediction of promiscuous MHC Class-I binding sites. Bioinformatics 19, 1009 (2003).
-
(2003)
Bioinformatics
, vol.19
, pp. 1009
-
-
Singh, H.1
Raghava, G.2
-
71
-
-
0041335442
-
Prediction of promiscuous and high-affinity mutated MHC binders
-
Bhasin, M., Raghava, G.P.: Prediction of promiscuous and high-affinity mutated MHC binders. Hybrid Hybridomics 22, 229-234 (2003).
-
(2003)
Hybrid Hybridomics
, vol.22
, pp. 229-234
-
-
Bhasin, M.1
Raghava, G.P.2
-
72
-
-
17844385106
-
The role of the proteasome in generating cytotoxic T-cell epitopes: Insights obtained from improved predictions of proteasomal cleavage
-
Nielsen, M., Lundegaard, C., Lund, O., Keómir, C.: The role of the proteasome in generating cytotoxic T-cell epitopes: Insights obtained from improved predictions of proteasomal cleavage. Immunogenetics 57, 33-41 (2005).
-
(2005)
Immunogenetics
, vol.57
, pp. 33-41
-
-
Nielsen, M.1
Lundegaard, C.2
Lund, O.3
Keómir, C.4
-
73
-
-
38049169092
-
Large-scale validation of methods for cytotoxic T-lymphocyte epitope prediction
-
Larsen, M., Lundegaard, C., Lamberth, K., Buus, S., Lund, O., Nielsen, M.: Large-scale validation of methods for cytotoxic T-lymphocyte epitope prediction. BMC Bioinformatics 8, 424 (2007).
-
(2007)
BMC Bioinformatics
, vol.8
, pp. 424
-
-
Larsen, M.1
Lundegaard, C.2
Lamberth, K.3
Buus, S.4
Lund, O.5
Nielsen, M.6
-
74
-
-
0035074032
-
PAProC: A prediction algorithm for proteasomal cleavages available on the WWW
-
Nussbaum, A.K., Kuttler, C., Hadeler, K.P., Rammensee, H.G., Schild, H.: PAProC: A prediction algorithm for proteasomal cleavages available on the WWW. Immunogenetics 53, 87-94 (2001).
-
(2001)
Immunogenetics
, vol.53
, pp. 87-94
-
-
Nussbaum, A.K.1
Kuttler, C.2
Hadeler, K.P.3
Rammensee, H.G.4
Schild, H.5
-
75
-
-
23144433033
-
P cleavage: An SVM based method for prediction of constitutive proteasome and immunoproteasome cleavage sites in antigenic sequences
-
Bhasin, M., Raghava, G.: P cleavage: An SVM based method for prediction of constitutive proteasome and immunoproteasome cleavage sites in antigenic sequences. Nucleic Acids Research 33, W202 (2005).
-
(2005)
Nucleic Acids Research
, vol.33
, pp. W202
-
-
Bhasin, M.1
Raghava, G.2
-
76
-
-
0036137241
-
ProPred: Prediction of HLA-DR binding sites
-
Singh, H., Raghava, G.: ProPred: Prediction of HLA-DR binding sites. Bioinformatics 17, 1236 (2001).
-
(2001)
Bioinformatics
, vol.17
, pp. 1236
-
-
Singh, H.1
Raghava, G.2
-
77
-
-
44649153892
-
SYFPEITHI: Database for searching and T-cell epitope prediction
-
Schuler, M., Nastke, M., Stevanovik, S.: SYFPEITHI: Database for searching and T-cell epitope prediction. Methods in Molecular Biology (Clifton, NJ) 409, 75 (2007).
-
(2007)
Methods in Molecular Biology (Clifton, NJ)
, vol.409
, pp. 75
-
-
Schuler, M.1
Nastke, M.2
Stevanovik, S.3
-
78
-
-
1342268087
-
Analysis and prediction of affinity of TAP binding peptides using cascade SVM
-
Bhasin, M., Raghava, G.: Analysis and prediction of affinity of TAP binding peptides using cascade SVM. Protein Science 13, 596-607 (2004).
-
(2004)
Protein Science
, vol.13
, pp. 596-607
-
-
Bhasin, M.1
Raghava, G.2
-
79
-
-
0028052724
-
Scheme for ranking potential HLA-A2 binding peptides based on independent binding of individual peptide side-chains
-
Parker, K.C., Bednarek, M.A., Coligan, J.E.: Scheme for ranking potential HLA-A2 binding peptides based on independent binding of individual peptide side-chains. The Journal of Immunology 152, 163-175 (1994).
-
(1994)
The Journal of Immunology
, vol.152
, pp. 163-175
-
-
Parker, K.C.1
Bednarek, M.A.2
Coligan, J.E.3
-
80
-
-
84919871725
-
-
Edition. Springer, New York, USA
-
Schönbach, C., Ranganathan, S., Brusic, V.: Immunoinformatics, Edition. Springer, New York, USA, 2008, pp. 19-49.
-
(2008)
Immunoinformatics
, pp. 19-49
-
-
Schönbach, C.1
Ranganathan, S.2
Brusic, V.3
-
81
-
-
0028288506
-
Prevalence of food allergy and intolerance in the adult Dutch population 1
-
Niestijl Jansen, J.J., Kardinaal, A.F.M., Huijbers, G., Vlieg-Boerstra, B.J., Martens, B.P.M., Ockhuizen, T.: Prevalence of food allergy and intolerance in the adult Dutch population 1. Journal of Allergy and Clinical Immunology 93, 446-456 (1994).
-
(1994)
Journal of Allergy and Clinical Immunology
, vol.93
, pp. 446-456
-
-
Niestijl Jansen, J.J.1
Kardinaal, A.F.M.2
Huijbers, G.3
Vlieg-Boerstra, B.J.4
Martens, B.P.M.5
Ockhuizen, T.6
-
82
-
-
0031024417
-
A cost of illness study of allergic rhinitis in the United States
-
Malone, D.C., Lawson, K.A., Smith, D.H., Michael Arrighi, H.: A cost of illness study of allergic rhinitis in the United States. Journal of Allergy and Clinical Immunology 99, 22-27 (1997).
-
(1997)
Journal of Allergy and Clinical Immunology
, vol.99
, pp. 22-27
-
-
Malone, D.C.1
Lawson, K.A.2
Smith, D.H.3
Michael Arrighi, H.4
-
83
-
-
0034917911
-
Population study of food allergy in France
-
Kanny, G., Moneret-Vautrin, D.A., Flabbee, J., Beaudouin, E., Morisset, M., Thevenin, F.: Population study of food allergy in France. Journal of Allergy and Clinical Immunology 108, 133-140 (2001).
-
(2001)
Journal of Allergy and Clinical Immunology
, vol.108
, pp. 133-140
-
-
Kanny, G.1
Moneret-Vautrin, D.A.2
Flabbee, J.3
Beaudouin, E.4
Morisset, M.5
Thevenin, F.6
-
84
-
-
0034442058
-
Specific immunotherapy
-
Larche, M.: Specific immunotherapy. British Medical Bulletin 56, 1019 (2000).
-
(2000)
British Medical Bulletin
, vol.56
, pp. 1019
-
-
Larche, M.1
-
85
-
-
8844259689
-
Predicting allergenic proteins using wavelet transform
-
Li, K.B., Issac, P., Krishnan, A.: Predicting allergenic proteins using wavelet transform. Bioinformatics 20, 2572 (2004).
-
(2004)
Bioinformatics
, vol.20
, pp. 2572
-
-
Li, K.B.1
Issac, P.2
Krishnan, A.3
-
86
-
-
42949107549
-
Methods and protocols for the assessment of protein allergenicity and cross-reactivity
-
Tong, J., Tammi, M.: Methods and protocols for the assessment of protein allergenicity and cross-reactivity. Frontiers in Bioscience: A Journal and Virtual Library 13, 4882 (2008).
-
(2008)
Frontiers in Bioscience: A Journal and Virtual Library
, vol.13
, pp. 4882
-
-
Tong, J.1
Tammi, M.2
-
87
-
-
33747871140
-
AlgPred: Prediction of allergenic proteins and mapping of IgE epitopes
-
Saha, S., Raghava, G.: AlgPred: Prediction of allergenic proteins and mapping of IgE epitopes. Nucleic Acids Research 34, W202 (2006).
-
(2006)
Nucleic Acids Research
, vol.34
, pp. W202
-
-
Saha, S.1
Raghava, G.2
-
88
-
-
77956300978
-
A database for allergenic proteins and tools for allergenicity prediction
-
Kim, C., Kwon, S., Lee, G., Lee, H., Choi, J., Kim, Y., Hahn, J.: A database for allergenic proteins and tools for allergenicity prediction. Bioinformation 3, 344 (2009).
-
(2009)
Bioinformation
, vol.3
, pp. 344
-
-
Kim, C.1
Kwon, S.2
Lee, G.3
Lee, H.4
Choi, J.5
Kim, Y.6
Hahn, J.7
-
89
-
-
34248357461
-
Allergome - A database of allergenic molecules: Structure and data implementations of a web-based resource
-
Mari, A., Mari, V., Ronconi, A.: Allergome - A database of allergenic molecules: Structure and data implementations of a web-based resource. Journal of Allergy and Clinical Immunology 115, S87 (2005).
-
(2005)
Journal of Allergy and Clinical Immunology
, vol.115
, pp. S87
-
-
Mari, A.1
Mari, V.2
Ronconi, A.3
-
90
-
-
13244265577
-
Allermatch, a webtool for the prediction of potential allergenicity according to current FAO/WHO Codex alimentarius guidelines
-
Fiers, M.W.E.J., Kleter, G.A., Nijland, H., Peijnenburg, A.A.C.M., Nap, J.P., Van Ham, R.C.H.J.: Allermatch, a webtool for the prediction of potential allergenicity according to current FAO/WHO Codex alimentarius guidelines. BMC Bioinformatics 5, 133 (2004).
-
(2004)
BMC Bioinformatics
, vol.5
, pp. 133
-
-
Fiers, M.W.E.J.1
Kleter, G.A.2
Nijland, H.3
Peijnenburg, A.A.C.M.4
Nap, J.P.5
Van Ham, R.C.H.J.6
-
91
-
-
84855171887
-
The clinical features of HBV asymptomatic carrier, and management
-
Miyasaka, A., Suzuki, K.: [The clinical features of HBV asymptomatic carrier, and management]. Nihon Rinsho 69(Suppl 4), 434-439 (2011).
-
(2011)
Nihon Rinsho
, vol.69
, pp. 434-439
-
-
Miyasaka, A.1
Suzuki, K.2
-
92
-
-
84855168608
-
HBeAg and HBV DNA in chronic hepatitis B
-
Imazeki, F., Wu, S., Arai, M., Kanda, T., Yokosuka, O.: [HBeAg and HBV DNA in chronic hepatitis B]. Nihon Rinsho 69(Suppl 4), 428-433 (2011).
-
(2011)
Nihon Rinsho
, vol.69
, pp. 428-433
-
-
Imazeki, F.1
Wu, S.2
Arai, M.3
Kanda, T.4
Yokosuka, O.5
-
93
-
-
84855182325
-
Indications and efficacy of hepatitis B vaccines (HB vaccines) and hepatitis B immune globulin (HBIG): Current situations and problems of hepatitis B virus (HBV) infection-preventing strategies in Japan
-
Ogata, N., Funada, H., Aoyagi, Y.: [Indications and efficacy of hepatitis B vaccines (HB vaccines) and hepatitis B immune globulin (HBIG): Current situations and problems of hepatitis B virus (HBV) infection-preventing strategies in Japan]. Nihon Rinsho 69(Suppl 4), 408-416 (2011).
-
(2011)
Nihon Rinsho
, vol.69
, pp. 408-416
-
-
Ogata, N.1
Funada, H.2
Aoyagi, Y.3
-
94
-
-
34547567978
-
EVALLER: A web server for in silico assessment of potential protein allergenicity
-
Barrio, A.M., Soeria-Atmadja, D., Nistér, A., Gustafsson, M.G., Hammerling, U., Bongcam-Rudloff, E.: EVALLER: A web server for in silico assessment of potential protein allergenicity. Nucleic Acids Research 35, W694 (2007).
-
(2007)
Nucleic Acids Research
, vol.35
, pp. W694
-
-
Barrio, A.M.1
Soeria-Atmadja, D.2
Nistér, A.3
Gustafsson, M.G.4
Hammerling, U.5
Bongcam-Rudloff, E.6
-
95
-
-
84855172587
-
Protection from HBV infection in medical institution
-
Okuse, C., Yotsuyanagi, H.: [Protection from HBV infection in medical institution]. Nihon Rinsho 69(Suppl 4), 402-407 (2011).
-
(2011)
Nihon Rinsho
, vol.69
, pp. 402-407
-
-
Okuse, C.1
Yotsuyanagi, H.2
-
96
-
-
0037251966
-
SDAP: Database and computational tools for allergenic proteins
-
Ivanciuc, O., Schein, C.H., Braun, W.: SDAP: Database and computational tools for allergenic proteins. Nucleic Acids Research 31, 359 (2003).
-
(2003)
Nucleic Acids Research
, vol.31
, pp. 359
-
-
Ivanciuc, O.1
Schein, C.H.2
Braun, W.3
-
97
-
-
34250794497
-
ImmTree: Database of evolutionary relationships of genes and proteins in the human immune system
-
Ortutay, C., Siermala, M., Vihinen, M.: ImmTree: Database of evolutionary relationships of genes and proteins in the human immune system. Immunome Research 3, 4 (2007).
-
(2007)
Immunome Research
, vol.3
, pp. 4
-
-
Ortutay, C.1
Siermala, M.2
Vihinen, M.3
-
98
-
-
36248952693
-
Immunity genes and their orthologs: A multi-species database
-
Rannikko, K., Ortutay, C., Vihinen, M.: Immunity genes and their orthologs: A multi-species database. International immunology 19, 1361 (2007).
-
(2007)
International Immunology
, vol.19
, pp. 1361
-
-
Rannikko, K.1
Ortutay, C.2
Vihinen, M.3
-
99
-
-
80052342097
-
An in silico DNA vaccine against Listeria monocytogenes
-
Jahangiri, A., Rasooli, I., Gargari, S.L.M., Owlia, P., Rahbar, M.R., Amani, J., Khalili, S.: An in silico DNA vaccine against Listeria monocytogenes. Vaccine 29, 6948-6958 (2011).
-
(2011)
Vaccine
, vol.29
, pp. 6948-6958
-
-
Jahangiri, A.1
Rasooli, I.2
Gargari, S.L.M.3
Owlia, P.4
Rahbar, M.R.5
Amani, J.6
Khalili, S.7
-
100
-
-
84859931126
-
Precise detection of L. Monocytogenes hitting its highly conserved region possessing several specific antibody binding sites
-
Jahangiri, A., Rasooli, I., Reza Rahbar, M., Khalili, S., Amani, J., Ahmadi Zanoos, K.: Precise detection of L. monocytogenes hitting its highly conserved region possessing several specific antibody binding sites. Journal of Theoretical Biology 305, 15-23 (2012).
-
(2012)
Journal of Theoretical Biology
, vol.305
, pp. 15-23
-
-
Jahangiri, A.1
Rasooli, I.2
Reza Rahbar, M.3
Khalili, S.4
Amani, J.5
Ahmadi Zanoos, K.6
-
101
-
-
81055138205
-
A potential in silico antibody-antigen based diagnostic test for precise identification of Acinetobacter baumannii
-
Rahbar, M.R., Rasooli, I., Gargari, S.L., Sandstrom, G., Amani, J., Fattahian, Y., Jahangiri, A., Jalali, M.: A potential in silico antibody-antigen based diagnostic test for precise identification of Acinetobacter baumannii. J Theor Biol 294, 29-39 (2012).
-
(2012)
J Theor Biol
, vol.294
, pp. 29-39
-
-
Rahbar, M.R.1
Rasooli, I.2
Gargari, S.L.3
Sandstrom, G.4
Amani, J.5
Fattahian, Y.6
Jahangiri, A.7
Jalali, M.8
-
102
-
-
84881228096
-
Immune response variations to Salmonella enterica serovar Typhi recombinant porin proteins in mice
-
Toobak, H., Rasooli, I., Talei, D., Jahangiri, A., Owlia, P., Darvish Alipour Astaneh, S.: Immune response variations to Salmonella enterica serovar Typhi recombinant porin proteins in mice. Biologicals 41, 224-230 (2013).
-
(2013)
Biologicals
, vol.41
, pp. 224-230
-
-
Toobak, H.1
Rasooli, I.2
Talei, D.3
Jahangiri, A.4
Owlia, P.5
Darvish Alipour Astaneh, S.6
-
103
-
-
73449105103
-
In silico analysis of chimeric espA, eae and tir fragments of Escherichia coli O 157: H 7 for oral immunogenic applications
-
Amani, J., Mousavi, S.L., Rafati, S., Salmanian, A.H.: In silico analysis of chimeric espA, eae and tir fragments of Escherichia coli O 157: H 7 for oral immunogenic applications. Theoretical Biology and Medical Modelling 6, 28 (2009).
-
(2009)
Theoretical Biology and Medical Modelling
, vol.6
, pp. 28
-
-
Amani, J.1
Mousavi, S.L.2
Rafati, S.3
Salmanian, A.H.4
-
104
-
-
77954557401
-
In silico analysis of antibody triggering biofilm associated protein in Acinetobacter baumannii
-
Rahbar, M.R., Rasooli, I., Mousavi Gargari, S.L., Amani, J., Fattahian, Y.: In silico analysis of antibody triggering biofilm associated protein in Acinetobacter baumannii. Journal of Theoretical Biology 266, 275-290 (2010).
-
(2010)
Journal of Theoretical Biology
, vol.266
, pp. 275-290
-
-
Rahbar, M.R.1
Rasooli, I.2
Mousavi Gargari, S.L.3
Amani, J.4
Fattahian, Y.5
-
105
-
-
79952039765
-
Immunogenicity of a plant-derived edible chimeric EspA, Intimin and Tir of Escherichia coli O157:H7 in mice
-
Amani, J., Mousavi, S.L., Rafati, S., Salmanian, A.H.: Immunogenicity of a plant-derived edible chimeric EspA, Intimin and Tir of Escherichia coli O157:H7 in mice. Plant Science 180, 620-627 (2011).
-
(2011)
Plant Science
, vol.180
, pp. 620-627
-
-
Amani, J.1
Mousavi, S.L.2
Rafati, S.3
Salmanian, A.H.4
-
106
-
-
84864053061
-
Patients with inflammatory bowel disease have a lower response rate to HBV vaccination compared to controls
-
Altunöz, M. E., Şenateş, E., Yeşil, A., Çalhan, T., Övünç, A.O.K.: Patients with inflammatory bowel disease have a lower response rate to HBV vaccination compared to controls. Digestive Diseases and Sciences 57, 1039-1044 (2012).
-
(2012)
Digestive Diseases and Sciences
, vol.57
, pp. 1039-1044
-
-
Altunöz, M.E.1
Şenateş, E.2
Yeşil, A.3
Çalhan, T.4
Övünç, A.O.K.5
-
107
-
-
0035989334
-
Immuno-informatics: Mining genomes for vaccine components
-
De Groot, A.S., Sbai, H., Saint Aubin, C., McMurry, J., Martin, W.: Immuno-informatics: Mining genomes for vaccine components. Immunology and Cell Biology 80, 255-269 (2002).
-
(2002)
Immunology and Cell Biology
, vol.80
, pp. 255-269
-
-
De Groot, A.S.1
Sbai, H.2
Saint Aubin, C.3
McMurry, J.4
Martin, W.5
-
108
-
-
33847031827
-
VaxiJen: A server for prediction of protective antigens, tumour antigens and subunit vaccines
-
Doytchinova, I.A., Flower, D.R.: VaxiJen: A server for prediction of protective antigens, tumour antigens and subunit vaccines. BMC Bioinformatics 8, 4 (2007).
-
(2007)
BMC Bioinformatics
, vol.8
, pp. 4
-
-
Doytchinova, I.A.1
Flower, D.R.2
-
109
-
-
33747862005
-
DyNAVacS: An integrative tool for optimized DNA vaccine design
-
Harish, N., Gupta, R., Agarwal, P., Scaria, V., Pillai, B.: DyNAVacS: An integrative tool for optimized DNA vaccine design. Nucleic Acids Research 34, W264 (2006).
-
(2006)
Nucleic Acids Research
, vol.34
, pp. W264
-
-
Harish, N.1
Gupta, R.2
Agarwal, P.3
Scaria, V.4
Pillai, B.5
-
110
-
-
33749035486
-
NERVE: New enhanced reverse vaccinology environment
-
Vivona, S., Bernante, F., Filippini, F.: NERVE: New enhanced reverse vaccinology environment. BMC Biotechnology 6, 35 (2006).
-
(2006)
BMC Biotechnology
, vol.6
, pp. 35
-
-
Vivona, S.1
Bernante, F.2
Filippini, F.3
-
111
-
-
38549089606
-
VIOLIN: Vaccine investigation and online information network
-
Xiang, Z., Todd, T., Ku, K.P., Kovacic, B.L., Larson, C.B., Chen, F., Hodges, A.P., Tian, Y., Olenzek, E.A., Zhao, B.: VIOLIN: Vaccine investigation and online information network. Nucleic Acids Research 36, D923 (2008).
-
(2008)
Nucleic Acids Research
, vol.36
, pp. D923
-
-
Xiang, Z.1
Todd, T.2
Ku, K.P.3
Kovacic, B.L.4
Larson, C.B.5
Chen, F.6
Hodges, A.P.7
Tian, Y.8
Olenzek, E.A.9
Zhao, B.10
-
112
-
-
71849108371
-
Vaxign: A web-based vaccine target design program for reverse vaccinology
-
Xiang, Z., He, Y.: Vaxign: A web-based vaccine target design program for reverse vaccinology. Procedia in Vaccinology 1, 23-29 (2009).
-
(2009)
Procedia in Vaccinology
, vol.1
, pp. 23-29
-
-
Xiang, Z.1
He, Y.2
-
113
-
-
0033046472
-
Immunodominance in major histocompatibility complex class I-restricted T lymphocyte responses 1
-
Yewdell, J.W., Bennink, J.R.: Immunodominance in major histocompatibility complex class I-restricted T lymphocyte responses 1. Annual Review of Immunology 17, 51-88 (1999).
-
(1999)
Annual Review of Immunology
, vol.17
, pp. 51-88
-
-
Yewdell, J.W.1
Bennink, J.R.2
-
114
-
-
0033179885
-
Discrete proteolytic intermediates in the MHC class i antigen processing pathway and MHC I-dependent peptide trimming in the ER
-
Paz, P., Brouwenstijn, N., Perry, R., Shastri, N.: Discrete proteolytic intermediates in the MHC class I antigen processing pathway and MHC I-dependent peptide trimming in the ER. Immunity 11, 241-251 (1999).
-
(1999)
Immunity
, vol.11
, pp. 241-251
-
-
Paz, P.1
Brouwenstijn, N.2
Perry, R.3
Shastri, N.4
-
115
-
-
0030886208
-
Two distinct proteolytic processes in the generation of a major histocompatibility complex class I-presented peptide
-
Craiu, A., Akopian, T., Goldberg, A., Rock, K.L.: Two distinct proteolytic processes in the generation of a major histocompatibility complex class I-presented peptide. Proc Natl Acad Sci U S A 94, 10850-10855 (1997).
-
(1997)
Proc Natl Acad Sci U S A
, vol.94
, pp. 10850-10855
-
-
Craiu, A.1
Akopian, T.2
Goldberg, A.3
Rock, K.L.4
-
116
-
-
0034723134
-
Sequence signals for generation of antigenic peptides by the proteasome: Implications for proteasomal cleavage mechanism
-
Altuvia, Y., Margalit, H.: Sequence signals for generation of antigenic peptides by the proteasome: Implications for proteasomal cleavage mechanism. J Mol Biol 295, 879-890 (2000).
-
(2000)
J Mol Biol
, vol.295
, pp. 879-890
-
-
Altuvia, Y.1
Margalit, H.2
-
117
-
-
0033486008
-
Distinct proteolytic processes generate the C and N termini of MHC class I-binding peptides
-
Mo, X., Cascio, P., Lemerise, K., Goldberg, A.L., Rock, K.: Distinct proteolytic processes generate the C and N termini of MHC class I-binding peptides. The Journal of Immunology 163, 5851-5859 (1999).
-
(1999)
The Journal of Immunology
, vol.163
, pp. 5851-5859
-
-
Mo, X.1
Cascio, P.2
Lemerise, K.3
Goldberg, A.L.4
Rock, K.5
-
118
-
-
0031771008
-
Generation of the vesicular stomatitis virus nucleoprotein cytotoxic T lymphocyte epitope requires proteasome-dependent and -independent proteolytic activities
-
Stoltze, L., Dick, T.P., Deeg, M., Pommerl, B., Rammensee, H.G., Schild, H.: Generation of the vesicular stomatitis virus nucleoprotein cytotoxic T lymphocyte epitope requires proteasome-dependent and -independent proteolytic activities. Eur J Immunol 28, 4029-4036 (1998).
-
(1998)
Eur J Immunol
, vol.28
, pp. 4029-4036
-
-
Stoltze, L.1
Dick, T.P.2
Deeg, M.3
Pommerl, B.4
Rammensee, H.G.5
Schild, H.6
-
119
-
-
70449338115
-
Systematic characterisation of cellular localisation and expression profiles of proteins containing MHC ligands
-
Juncker, A.S., Larsen, M.V., Weinhold, N., Nielsen, M., Brunak, S., Lund, O.: Systematic characterisation of cellular localisation and expression profiles of proteins containing MHC ligands. PLoS One 4, (2009).
-
(2009)
PLoS One
, vol.4
-
-
Juncker, A.S.1
Larsen, M.V.2
Weinhold, N.3
Nielsen, M.4
Brunak, S.5
Lund, O.6
-
120
-
-
0037108488
-
The final N-terminal trimming of a subaminoterminal proline-containing HLA class I-restricted antigenic peptide in the cytosol is mediated by two peptidases
-
Lévy, F., Burri, L., Morel, S., Peitrequin, A.L., Lévy, N., Bachi, A., Hellman, U., Van den Eynde, B.J., Servis, C.: The final N-terminal trimming of a subaminoterminal proline-containing HLA class I-restricted antigenic peptide in the cytosol is mediated by two peptidases. The Journal of Immunology 169, 4161 (2002).
-
(2002)
The Journal of Immunology
, vol.169
, pp. 4161
-
-
Lévy, F.1
Burri, L.2
Morel, S.3
Peitrequin, A.L.4
Lévy, N.5
Bachi, A.6
Hellman, U.7
Van Den Eynde, B.J.8
Servis, C.9
-
121
-
-
0035293717
-
The transporter associated with antigen processing (TAP): Structural integrity, expression, function, and its clinical relevance
-
Ritz, U., Seliger, B.: The transporter associated with antigen processing (TAP): Structural integrity, expression, function, and its clinical relevance. Mol Med 7, 149-158 (2001).
-
(2001)
Mol Med
, vol.7
, pp. 149-158
-
-
Ritz, U.1
Seliger, B.2
-
122
-
-
1642290656
-
Functional dissection of the transmembrane domains of the transporter associated with antigen processing (TAP)
-
Koch, J., Guntrum, R., Heintke, S., Kyritsis, C., Tampé, R.: Functional dissection of the transmembrane domains of the transporter associated with antigen processing (TAP). Journal of Biological Chemistry 279, 10142-10147 (2004).
-
(2004)
Journal of Biological Chemistry
, vol.279
, pp. 10142-10147
-
-
Koch, J.1
Guntrum, R.2
Heintke, S.3
Kyritsis, C.4
Tampé, R.5
-
123
-
-
0028501327
-
A sequential model for peptide binding and transport by the transporters associated with antigen processing
-
van Endert, P.M., Tampe, R., Meyer, T.H., Tisch, R., Bach, J.F., McDevitt, H.O.: A sequential model for peptide binding and transport by the transporters associated with antigen processing. Immunity 1, 491-500 (1994).
-
(1994)
Immunity
, vol.1
, pp. 491-500
-
-
Van Endert, P.M.1
Tampe, R.2
Meyer, T.H.3
Tisch, R.4
Bach, J.F.5
McDevitt, H.O.6
-
124
-
-
49149120276
-
Characterizing the N-terminal processing motif of MHC class i ligands
-
Schatz, M.M., Peters, B., Akkad, N., Ullrich, N., Martinez, A.N., Carroll, O., Bulik, S., Rammensee, H.G., van Endert, P., Holzhütter, H.G.: Characterizing the N-terminal processing motif of MHC class I ligands. The Journal of Immunology 180, 3210-3217 (2008).
-
(2008)
The Journal of Immunology
, vol.180
, pp. 3210-3217
-
-
Schatz, M.M.1
Peters, B.2
Akkad, N.3
Ullrich, N.4
Martinez, A.N.5
Carroll, O.6
Bulik, S.7
Rammensee, H.G.8
Van Endert, P.9
Holzhütter, H.G.10
-
125
-
-
77953149616
-
NetCTLpan: Pan-specific MHC class i pathway epitope predictions
-
Stranzl, T., Larsen, M.V., Lundegaard, C., Nielsen, M.: NetCTLpan: Pan-specific MHC class I pathway epitope predictions. Immunogenetics 62, 357-368 (2010).
-
(2010)
Immunogenetics
, vol.62
, pp. 357-368
-
-
Stranzl, T.1
Larsen, M.V.2
Lundegaard, C.3
Nielsen, M.4
-
126
-
-
38049169092
-
Large-scale validation of methods for cytotoxic T-lymphocyte epitope prediction
-
Larsen, M.V., Lundegaard, C., Lamberth, K., Buus, S., Lund, O., Nielsen, M.: Large-scale validation of methods for cytotoxic T-lymphocyte epitope prediction. BMC Bioinformatics 8, 424 (2007).
-
(2007)
BMC Bioinformatics
, vol.8
, pp. 424
-
-
Larsen, M.V.1
Lundegaard, C.2
Lamberth, K.3
Buus, S.4
Lund, O.5
Nielsen, M.6
-
127
-
-
3843052528
-
Prediction of CTL epitopes using QM, SVM and ANN techniques
-
Bhasin, M., Raghava, G.P.: Prediction of CTL epitopes using QM, SVM and ANN techniques. Vaccine 22, 3195-3204 (2004).
-
(2004)
Vaccine
, vol.22
, pp. 3195-3204
-
-
Bhasin, M.1
Raghava, G.P.2
-
128
-
-
23644443226
-
Integrated modeling of the major events in the MHC class i antigen processing pathway
-
Donnes, P., Kohlbacher, O.: Integrated modeling of the major events in the MHC class I antigen processing pathway. Protein Sci 14, 2132-2140 (2005).
-
(2005)
Protein Sci
, vol.14
, pp. 2132-2140
-
-
Donnes, P.1
Kohlbacher, O.2
-
129
-
-
33645472169
-
EpiJen: A server for multistep T cell epitope prediction
-
Doytchinova, I.A., Guan, P., Flower, D.R.: EpiJen: A server for multistep T cell epitope prediction. BMC Bioinformatics 7, 131 (2006).
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 131
-
-
Doytchinova, I.A.1
Guan, P.2
Flower, D.R.3
-
131
-
-
33646448179
-
Computational modelling and simulation of the immune system
-
Kalita, J., Chandrashekar, K., Hans, R., Selvam, P.: Computational modelling and simulation of the immune system. International Journal of Bioinformatics Research and Applications 2, 63-88 (2006).
-
(2006)
International Journal of Bioinformatics Research and Applications
, vol.2
, pp. 63-88
-
-
Kalita, J.1
Chandrashekar, K.2
Hans, R.3
Selvam, P.4
-
132
-
-
26444457393
-
The role of computational models of the immune system in designing vaccination strategies
-
Castiglione, F., Liso, A.: The role of computational models of the immune system in designing vaccination strategies. Immunopharmacology and Immunotoxicology 27, 417-432 (2005).
-
(2005)
Immunopharmacology and Immunotoxicology
, vol.27
, pp. 417-432
-
-
Castiglione, F.1
Liso, A.2
|