-
1
-
-
0000532278
-
An application of the theory of probabilities to the study of a priori pathometry. Part I
-
Ross R. An application of the theory of probabilities to the study of a priori pathometry. Part I. Proc. R. Soc. Lond. Ser. A 92 (1916) 204-230
-
(1916)
Proc. R. Soc. Lond. Ser. A
, vol.92
, pp. 204-230
-
-
Ross, R.1
-
4
-
-
0035161548
-
IMGT/HLA Database - a sequence database for the human major histocompatibility complex
-
Robinson J., et al. IMGT/HLA Database - a sequence database for the human major histocompatibility complex. Nucleic Acids Res. 29 (2001) 210-213
-
(2001)
Nucleic Acids Res.
, vol.29
, pp. 210-213
-
-
Robinson, J.1
-
5
-
-
0033388725
-
SYFPEITHI: database for MHC ligands and peptide motifs
-
Rammensee H., et al. SYFPEITHI: database for MHC ligands and peptide motifs. Immunogenetics 50 (1999) 213-219
-
(1999)
Immunogenetics
, vol.50
, pp. 213-219
-
-
Rammensee, H.1
-
6
-
-
0004040198
-
-
Korber, B.T.M. et al, eds, /, Los Alamos National Laboratory, Theoretical Biology and Biophysics, Los Alamos, New Mexico
-
Korber, B.T.M. et al., eds. (2006/2007) HIV Molecular Immunology, Los Alamos National Laboratory, Theoretical Biology and Biophysics, Los Alamos, New Mexico
-
(2006)
HIV Molecular Immunology
-
-
-
7
-
-
0037461027
-
MHCBN: a comprehensive database of MHC binding and non-binding peptides
-
Bhasin M., et al. MHCBN: a comprehensive database of MHC binding and non-binding peptides. Bioinformatics 19 (2003) 665-666
-
(2003)
Bioinformatics
, vol.19
, pp. 665-666
-
-
Bhasin, M.1
-
8
-
-
28544438391
-
AntiJen: a quantitative immunology database integrating functional, thermodynamic, kinetic, biophysical, and cellular data
-
Toseland C.P., et al. AntiJen: a quantitative immunology database integrating functional, thermodynamic, kinetic, biophysical, and cellular data. Immunome Res. 1 (2005) 4
-
(2005)
Immunome Res.
, vol.1
, pp. 4
-
-
Toseland, C.P.1
-
9
-
-
33644873221
-
Epitome: database of structure-inferred antigenic epitopes
-
Schlessinger A., et al. Epitome: database of structure-inferred antigenic epitopes. Nucleic Acids Res. 34 (2006) D777-D780
-
(2006)
Nucleic Acids Res.
, vol.34
-
-
Schlessinger, A.1
-
10
-
-
20944447214
-
The immune epitope database and analysis resource: from vision to blueprint
-
Peters B., et al. The immune epitope database and analysis resource: from vision to blueprint. PLoS Biol. 3 (2005) e91
-
(2005)
PLoS Biol.
, vol.3
-
-
Peters, B.1
-
11
-
-
58149316094
-
IMGT, the international ImMunoGeneTics information system
-
Lefranc M.P., et al. IMGT, the international ImMunoGeneTics information system. Nucleic Acids Res. 37 (2005) D1006-D1012
-
(2005)
Nucleic Acids Res.
, vol.37
-
-
Lefranc, M.P.1
-
12
-
-
33644874839
-
IMGT/LIGM-DB, the IMGT comprehensive database of immunoglobulin and T cell receptor nucleotide sequences
-
Giudicelli V., et al. IMGT/LIGM-DB, the IMGT comprehensive database of immunoglobulin and T cell receptor nucleotide sequences. Nucleic Acids Res. 34 (2006) D781-784
-
(2006)
Nucleic Acids Res.
, vol.34
-
-
Giudicelli, V.1
-
13
-
-
13444273444
-
IMGT/GENE-DB: a comprehensive database for human and mouse immunoglobulin and T cell receptor genes
-
Giudicelli V., et al. IMGT/GENE-DB: a comprehensive database for human and mouse immunoglobulin and T cell receptor genes. Nucleic Acids Res. 33 (2005) D256-261
-
(2005)
Nucleic Acids Res.
, vol.33
-
-
Giudicelli, V.1
-
14
-
-
0347755625
-
IMGT/3D structure-DB and IMGT/StructuralQuery, a database and a tool for immunoglobulin, T cell receptor and MHC structural data
-
Kaas Q., et al. IMGT/3D structure-DB and IMGT/StructuralQuery, a database and a tool for immunoglobulin, T cell receptor and MHC structural data. Nucleic Acids Res. 32 (2004) D208-D210
-
(2004)
Nucleic Acids Res.
, vol.32
-
-
Kaas, Q.1
-
15
-
-
13444291585
-
IPD - the Immuno Polymorphism Database
-
Robinson J., et al. IPD - the Immuno Polymorphism Database. Nucleic Acids Res. 331 (2005) D523-D526
-
(2005)
Nucleic Acids Res.
, vol.331
-
-
Robinson, J.1
-
16
-
-
0031644680
-
Sequence databases for assessing the potential allergenicity of proteins used in transgenic foods
-
Gendel S.M. Sequence databases for assessing the potential allergenicity of proteins used in transgenic foods. Adv. Food Nutr. Res. 42 (1998) 63-92
-
(1998)
Adv. Food Nutr. Res.
, vol.42
, pp. 63-92
-
-
Gendel, S.M.1
-
17
-
-
0028114857
-
Allergen nomenclature
-
Hoffman D., et al. Allergen nomenclature. Bull. World Health Organ. 72 (1994) 796-806
-
(1994)
Bull. World Health Organ.
, vol.72
, pp. 796-806
-
-
Hoffman, D.1
-
18
-
-
0037251966
-
SDAP: database and computational tools for allergenic proteins
-
Ivanciuc O., et al. SDAP: database and computational tools for allergenic proteins. Nucleic Acids Res. 31 (2003) 359-362
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 359-362
-
-
Ivanciuc, O.1
-
19
-
-
0036673480
-
Bioinformatic methods for allergenicity assessment using a comprehensive allergen database
-
Hileman R.E., et al. Bioinformatic methods for allergenicity assessment using a comprehensive allergen database. Int. Arch. Allergy Immunol. 128 (2002) 280-291
-
(2002)
Int. Arch. Allergy Immunol.
, vol.128
, pp. 280-291
-
-
Hileman, R.E.1
-
20
-
-
34248357461
-
Allergome - a database of Allergenic molecules: structure and data implementations of a web-based resource
-
Mari A., et al. Allergome - a database of Allergenic molecules: structure and data implementations of a web-based resource. J. Allergy Clin. Immunol. 115 (2005) S87
-
(2005)
J. Allergy Clin. Immunol.
, vol.115
-
-
Mari, A.1
-
21
-
-
67649542180
-
-
Lefranc, M.P. (2006) Web sites of interest to immunologists. Curr. Protoc. Immunol. Appendix 1, Appendix 1J
-
Lefranc, M.P. (2006) Web sites of interest to immunologists. Curr. Protoc. Immunol. Appendix 1, Appendix 1J
-
-
-
-
22
-
-
33748521231
-
Supporting the curation of biological databases with reusable text mining
-
Miotto O., et al. Supporting the curation of biological databases with reusable text mining. Genome Inform. 16 (2005) 32-44
-
(2005)
Genome Inform.
, vol.16
, pp. 32-44
-
-
Miotto, O.1
-
23
-
-
33748376061
-
An automated procedure to identify biomedical articles that contain cancer-associated gene variants
-
McDonald R., et al. An automated procedure to identify biomedical articles that contain cancer-associated gene variants. Hum. Mutat. 27 (2006) 957-964
-
(2006)
Hum. Mutat.
, vol.27
, pp. 957-964
-
-
McDonald, R.1
-
24
-
-
34548493473
-
Automating document classification for the Immune Epitope Database
-
Wang P., et al. Automating document classification for the Immune Epitope Database. BMC Bioinform. 8 (2007) 269
-
(2007)
BMC Bioinform.
, vol.8
, pp. 269
-
-
Wang, P.1
-
25
-
-
48449094247
-
IMGT/V-QUEST: the highly customized and integrated system for IG and TR standardized V-J and V-D-J sequence analysis
-
Brochet X., et al. IMGT/V-QUEST: the highly customized and integrated system for IG and TR standardized V-J and V-D-J sequence analysis. Nucleic Acids Res. 36 (2008) W503-508
-
(2008)
Nucleic Acids Res.
, vol.36
-
-
Brochet, X.1
-
26
-
-
46049112076
-
IG, TR and IgSF, MHC and MhcSF: what do we learn from the IMGT Colliers de Perles?
-
Kaas Q., et al. IG, TR and IgSF, MHC and MhcSF: what do we learn from the IMGT Colliers de Perles?. Brief. Funct. Genomic Proteom. 6 (2007) 253-264
-
(2007)
Brief. Funct. Genomic Proteom.
, vol.6
, pp. 253-264
-
-
Kaas, Q.1
-
27
-
-
34548751162
-
ViroBLAST: a stand-alone BLAST web server for flexible queries of multiple databases and user's datasets
-
Deng W., et al. ViroBLAST: a stand-alone BLAST web server for flexible queries of multiple databases and user's datasets. Bioinformatics 23 (2007) 2334-2336
-
(2007)
Bioinformatics
, vol.23
, pp. 2334-2336
-
-
Deng, W.1
-
28
-
-
0035041976
-
Molecular modeling and biochemical characterization reveal the mechanism of hepatitis B virus polymerase resistance to lamivudine (3TC) and emtricitabine (FTC)
-
Das K., et al. Molecular modeling and biochemical characterization reveal the mechanism of hepatitis B virus polymerase resistance to lamivudine (3TC) and emtricitabine (FTC). J. Virol. 75 (2001) 4771-4779
-
(2001)
J. Virol.
, vol.75
, pp. 4771-4779
-
-
Das, K.1
-
29
-
-
34248403166
-
Information integration of protein-protein interactions as essential tools for Immunomics
-
Montañez R., et al. Information integration of protein-protein interactions as essential tools for Immunomics. Cell. Immunol. 244 (2006) 84-86
-
(2006)
Cell. Immunol.
, vol.244
, pp. 84-86
-
-
Montañez, R.1
-
30
-
-
0026459891
-
A model for simulating cognate recognition and response in the immune system
-
Seiden P.E., and Celada F. A model for simulating cognate recognition and response in the immune system. J. Theor. Biol. 158 (1992) 329-357
-
(1992)
J. Theor. Biol.
, vol.158
, pp. 329-357
-
-
Seiden, P.E.1
Celada, F.2
-
31
-
-
4344692259
-
Screening alternative models for transitional B-cell maturation
-
Shahaf G., et al. Screening alternative models for transitional B-cell maturation. Int. Immunol. 16 (2004) 1081-1090
-
(2004)
Int. Immunol.
, vol.16
, pp. 1081-1090
-
-
Shahaf, G.1
-
32
-
-
1542269177
-
MHC polymorphism under host-pathogen coevolution
-
Borghans J.A.M., et al. MHC polymorphism under host-pathogen coevolution. Immunogenetics 55 (2004) 732-739
-
(2004)
Immunogenetics
, vol.55
, pp. 732-739
-
-
Borghans, J.A.M.1
-
33
-
-
34248581488
-
Towards a consensus on datasets and evaluation metrics for developing B-cell epitope prediction tools
-
Greenbaum J.A., et al. Towards a consensus on datasets and evaluation metrics for developing B-cell epitope prediction tools. J. Mol. Recogn. 20 (2007) 75-82
-
(2007)
J. Mol. Recogn.
, vol.20
, pp. 75-82
-
-
Greenbaum, J.A.1
-
34
-
-
0000448982
-
Prediction of protein antigenic determinants from amino acid sequences
-
Hopp T.P., and Woods K.R. Prediction of protein antigenic determinants from amino acid sequences. Proc. Natl. Acad. Sci. U.S.A. 78 (1981) 3824-3828
-
(1981)
Proc. Natl. Acad. Sci. U.S.A.
, vol.78
, pp. 3824-3828
-
-
Hopp, T.P.1
Woods, K.R.2
-
35
-
-
0026350055
-
Predicting the location of continuous epitopes in proteins from their primary structure
-
Pellequer J., et al. Predicting the location of continuous epitopes in proteins from their primary structure. Methods Enzymol. 203 (1991) 176-201
-
(1991)
Methods Enzymol.
, vol.203
, pp. 176-201
-
-
Pellequer, J.1
-
36
-
-
11144246404
-
Benchmarking B cell epitope prediction: underperformance of existing methods
-
Blythe M.J., and Flower D.R. Benchmarking B cell epitope prediction: underperformance of existing methods. Protein Sci. 14 (2005) 246-248
-
(2005)
Protein Sci.
, vol.14
, pp. 246-248
-
-
Blythe, M.J.1
Flower, D.R.2
-
37
-
-
33748254730
-
Prediction of continuous B-cell epitopes in an antigen using recurrent neural network
-
Saha S., and Raghava G.P. Prediction of continuous B-cell epitopes in an antigen using recurrent neural network. Proteins 65 (2006) 40-48
-
(2006)
Proteins
, vol.65
, pp. 40-48
-
-
Saha, S.1
Raghava, G.P.2
-
38
-
-
33751099863
-
Prediction of residues in discontinuous B-cell epitopes using protein 3D structures
-
Andersen P.H., et al. Prediction of residues in discontinuous B-cell epitopes using protein 3D structures. Protein Sci. 15 (2006) 2558-2567
-
(2006)
Protein Sci.
, vol.15
, pp. 2558-2567
-
-
Andersen, P.H.1
-
39
-
-
34250635170
-
Methods and protocols for predicting immunogenic epitopes
-
Tong J.C., et al. Methods and protocols for predicting immunogenic epitopes. Brief. Bioinform. 8 (2007) 96-108
-
(2007)
Brief. Bioinform.
, vol.8
, pp. 96-108
-
-
Tong, J.C.1
-
40
-
-
58049217445
-
Pan-specific MHC class I predictors: a benchmark of HLA class I pan-specific prediction methods
-
Zhang H., et al. Pan-specific MHC class I predictors: a benchmark of HLA class I pan-specific prediction methods. Bioinformatics 25 (2009) 83-89
-
(2009)
Bioinformatics
, vol.25
, pp. 83-89
-
-
Zhang, H.1
-
41
-
-
59449094834
-
NetMHCpan, a method for MHC class I binding prediction beyond humans
-
Hoof, I., et al. NetMHCpan, a method for MHC class I binding prediction beyond humans. Immunogenetics 61, 1-13.
-
Immunogenetics
, vol.61
, pp. 1-13
-
-
Hoof, I.1
-
42
-
-
20844434026
-
Modeling the MHC class I pathway by combining predictions of proteasomal cleavage. TAP transport and MHC class I binding
-
Tenzer S., et al. Modeling the MHC class I pathway by combining predictions of proteasomal cleavage. TAP transport and MHC class I binding. Cell. Mol. Life Sci. 62 (2005) 1025-1037
-
(2005)
Cell. Mol. Life Sci.
, vol.62
, pp. 1025-1037
-
-
Tenzer, S.1
-
43
-
-
7944224384
-
Discovery of promiscuous HLA-II-restricted T cell epitopes with TEPITOPE
-
Bian H., and Hammer J. Discovery of promiscuous HLA-II-restricted T cell epitopes with TEPITOPE. Methods 34 (2004) 468-475
-
(2004)
Methods
, vol.34
, pp. 468-475
-
-
Bian, H.1
Hammer, J.2
-
44
-
-
8844259689
-
Predicting allergenic proteins using wavelet transform
-
Li G.B., et al. Predicting allergenic proteins using wavelet transform. Bioinformatics 20 (2004) 2572-2578
-
(2004)
Bioinformatics
, vol.20
, pp. 2572-2578
-
-
Li, G.B.1
-
45
-
-
42949107549
-
Methods and protocols for the assessment of protein allergenicity and cross-reactivity
-
Tong J.C., and Martti M.T. Methods and protocols for the assessment of protein allergenicity and cross-reactivity. Front. Biosci. 13 (2008) 4882-4888
-
(2008)
Front. Biosci.
, vol.13
, pp. 4882-4888
-
-
Tong, J.C.1
Martti, M.T.2
-
46
-
-
0036941115
-
Prediction of food protein allergenicity: a bioinformatic learning systems approach
-
Zorzet A., et al. Prediction of food protein allergenicity: a bioinformatic learning systems approach. In Silico Biol. 2 (2002) 525-534
-
(2002)
In Silico Biol.
, vol.2
, pp. 525-534
-
-
Zorzet, A.1
-
47
-
-
2342467296
-
Framework for evaluating public heath surveillance systems for early detection of outbreaks; recommendations from the CDC Working Group
-
Centers for Disease Control and Prevention. Framework for evaluating public heath surveillance systems for early detection of outbreaks; recommendations from the CDC Working Group. MMWR Recomm. Rep. 53 (2004) RR-5
-
(2004)
MMWR Recomm. Rep.
, vol.53
-
-
Centers for Disease Control and Prevention1
-
48
-
-
4844224529
-
Syndromic surveillance for influenza like illness in ambulatory care network
-
Miller B., et al. Syndromic surveillance for influenza like illness in ambulatory care network. Emerg. Infect. Dis. 10 (2004) 1806-1811
-
(2004)
Emerg. Infect. Dis.
, vol.10
, pp. 1806-1811
-
-
Miller, B.1
-
49
-
-
29244437550
-
Containing acute disease outbreak
-
Prince A., et al. Containing acute disease outbreak. Methods Inf. Med. 44 (2005) 603-608
-
(2005)
Methods Inf. Med.
, vol.44
, pp. 603-608
-
-
Prince, A.1
-
50
-
-
43149107416
-
Rule-based knowledge aggregation for large-scale protein sequence analysis of influenza A viruses
-
Olivio M., et al. Rule-based knowledge aggregation for large-scale protein sequence analysis of influenza A viruses. BMC Bioinform. 9 (2008) S7
-
(2008)
BMC Bioinform.
, vol.9
-
-
Olivio, M.1
-
51
-
-
43149084860
-
Evolutionarily conserved protein sequences of influenza A virus, avian and human, as vaccine targets
-
Heiny A.T., et al. Evolutionarily conserved protein sequences of influenza A virus, avian and human, as vaccine targets. PLoS ONE 11 (2007) e1190
-
(2007)
PLoS ONE
, vol.11
-
-
Heiny, A.T.1
-
52
-
-
33947400235
-
Large-scale analysis of antigenic diversity of T-cell epitopes in dengue virus
-
Khan A.M., et al. Large-scale analysis of antigenic diversity of T-cell epitopes in dengue virus. BMC Bioinform 7 Suppl. 5 (2006) S4
-
(2006)
BMC Bioinform
, vol.7
, Issue.SUPPL. 5
-
-
Khan, A.M.1
-
53
-
-
38849161512
-
An integrative bioinformatic approach for studying escape mutations in human immunodeficiency virus type 1 gag in the Pumwani Sex Worker Cohort
-
Peters H.O., et al. An integrative bioinformatic approach for studying escape mutations in human immunodeficiency virus type 1 gag in the Pumwani Sex Worker Cohort. J. Virol. 82 (2008) 1980-1992
-
(2008)
J. Virol.
, vol.82
, pp. 1980-1992
-
-
Peters, H.O.1
-
54
-
-
34547566118
-
CanPredict: a computational tool for predicting cancer-associated missense mutations
-
Kaminker J.S., et al. CanPredict: a computational tool for predicting cancer-associated missense mutations. Nucleic Acids Res. 35 (2007) W595-W598
-
(2007)
Nucleic Acids Res.
, vol.35
-
-
Kaminker, J.S.1
-
55
-
-
34547111266
-
Evidence for systems-level molecular mechanisms of tumorigenesis
-
Hernández P., et al. Evidence for systems-level molecular mechanisms of tumorigenesis. BMC Genomics 8 (2007) 185
-
(2007)
BMC Genomics
, vol.8
, pp. 185
-
-
Hernández, P.1
-
56
-
-
33748706765
-
Global topological features of cancer proteins in the human interactome
-
Jonsson P.F., and Bates P.A. Global topological features of cancer proteins in the human interactome. Bioinformatics 22 (2006) 2291-2297
-
(2006)
Bioinformatics
, vol.22
, pp. 2291-2297
-
-
Jonsson, P.F.1
Bates, P.A.2
-
57
-
-
0035224384
-
Feature selection for DNA methylation based cancer classification
-
Model F., et al. Feature selection for DNA methylation based cancer classification. Bioinformatics 17 (2001) S157-S164
-
(2001)
Bioinformatics
, vol.17
-
-
Model, F.1
-
58
-
-
33745541234
-
CpG island methylator phenotype underlies sporadic microsatellite instability and is tightly associated with BRAF mutation in colorectal cancer
-
Weisenberger D.J., et al. CpG island methylator phenotype underlies sporadic microsatellite instability and is tightly associated with BRAF mutation in colorectal cancer. Nat. Genet. 38 (2006) 787-793
-
(2006)
Nat. Genet.
, vol.38
, pp. 787-793
-
-
Weisenberger, D.J.1
-
59
-
-
48249141403
-
Modeling immune system control of atherogenesis
-
Pappalardo F., et al. Modeling immune system control of atherogenesis. Bioinformatics 24 (2008) 1715-1721
-
(2008)
Bioinformatics
, vol.24
, pp. 1715-1721
-
-
Pappalardo, F.1
-
60
-
-
45849117153
-
Advancing cancer systems biology: introducing the center for the development of a virtual tumor, CViT
-
Deisboeck T.S., et al. Advancing cancer systems biology: introducing the center for the development of a virtual tumor, CViT. Cancer Inform. 2 (2007) 1-8
-
(2007)
Cancer Inform.
, vol.2
, pp. 1-8
-
-
Deisboeck, T.S.1
|