-
1
-
-
0042524266
-
Genomic approach to identification of Mycobacterium bovis diagnostic antigens in cattle
-
Aagaard C., Govaerts M., Meng Okkels L., Andersen P., Pollock J.M. Genomic approach to identification of Mycobacterium bovis diagnostic antigens in cattle. J. Clin. Microbiol. 2003, 41:3719.
-
(2003)
J. Clin. Microbiol.
, vol.41
, pp. 3719
-
-
Aagaard, C.1
Govaerts, M.2
Meng Okkels, L.3
Andersen, P.4
Pollock, J.M.5
-
2
-
-
77950462079
-
Aminoglycoside resistance and susceptibility testing errors in Acinetobacter baumannii-calcoaceticus complex
-
Akers K.S., Chaney C., Barsoumian A., Beckius M., Zera W., Yu X., Guymon C., Keen E.F., Robinson B.J., Mende K. Aminoglycoside resistance and susceptibility testing errors in Acinetobacter baumannii-calcoaceticus complex. J. Clin. Microbiol. 2010, 48:1132.
-
(2010)
J. Clin. Microbiol.
, vol.48
, pp. 1132
-
-
Akers, K.S.1
Chaney, C.2
Barsoumian, A.3
Beckius, M.4
Zera, W.5
Yu, X.6
Guymon, C.7
Keen, E.F.8
Robinson, B.J.9
Mende, K.10
-
3
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
-
Altschul S.F., Madden T.L., Schäffer A.A., Zhang J., Zhang2 Z., Miller W., Lipman D.J. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 1997, 25:3389-3402.
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schäffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
4
-
-
73449105103
-
In silico analysis of chimeric espA, eae and tir fragments of Escherichia coli O157:H7 for oral immunogenic applications
-
Amani J., Mousavi S.L., Rafati S., Salmanian A.H. In silico analysis of chimeric espA, eae and tir fragments of Escherichia coli O157:H7 for oral immunogenic applications. Theor. Biol. Med. Model. 2009, 6:28.
-
(2009)
Theor. Biol. Med. Model.
, vol.6
, pp. 28
-
-
Amani, J.1
Mousavi, S.L.2
Rafati, S.3
Salmanian, A.H.4
-
5
-
-
0036203123
-
Genome scale comparison of Mycobacterium avium subsp. paratuberculosis with Mycobacterium avium subsp. avium reveals potential diagnostic sequences
-
Bannantine J.P., Baechler E., Zhang Q., Li L.L., Kapur V. Genome scale comparison of Mycobacterium avium subsp. paratuberculosis with Mycobacterium avium subsp. avium reveals potential diagnostic sequences. J. Clin. Microbiol. 2002, 40:1303.
-
(2002)
J. Clin. Microbiol.
, vol.40
, pp. 1303
-
-
Bannantine, J.P.1
Baechler, E.2
Zhang, Q.3
Li, L.L.4
Kapur, V.5
-
6
-
-
85004911383
-
Positional flexibilities of amino acid residues in globular proteins
-
Bhaskaran R., Ponnuswamy P. Positional flexibilities of amino acid residues in globular proteins. Int. J. Peptide Protein Res. 1988, 32:241-255.
-
(1988)
Int. J. Peptide Protein Res.
, vol.32
, pp. 241-255
-
-
Bhaskaran, R.1
Ponnuswamy, P.2
-
7
-
-
0026069154
-
Amino acid scale: hydrophobicity of physiological l-alpha amino acids
-
Black S., Mould D. Amino acid scale: hydrophobicity of physiological l-alpha amino acids. Anal. Biochem. 1991, 193:72-82.
-
(1991)
Anal. Biochem.
, vol.193
, pp. 72-82
-
-
Black, S.1
Mould, D.2
-
8
-
-
35448961158
-
Immunoglobulins to surface-associated biofilm immunogens provide a novel means of visualization of methicillin-resistant Staphylococcus aureus biofilms
-
Brady R.A., Leid J.G., Kofonow J., Costerton J.W., Shirtliff M.E. Immunoglobulins to surface-associated biofilm immunogens provide a novel means of visualization of methicillin-resistant Staphylococcus aureus biofilms. Appl. Environ. Microbiol. 2007, 73:6612-6619.
-
(2007)
Appl. Environ. Microbiol.
, vol.73
, pp. 6612-6619
-
-
Brady, R.A.1
Leid, J.G.2
Kofonow, J.3
Costerton, J.W.4
Shirtliff, M.E.5
-
9
-
-
62149107862
-
Evaluation of biofilm production, gelatinase activity, and mannose-resistant hemagglutination in Acinetobacter baumannii strains
-
Cevahir N., Demir M., Kaleli I., Gurbuz M., Tikvesli S. Evaluation of biofilm production, gelatinase activity, and mannose-resistant hemagglutination in Acinetobacter baumannii strains. J. Microbiol. Immunol. Infect. 2008, 41:513-518.
-
(2008)
J. Microbiol. Immunol. Infect.
, vol.41
, pp. 513-518
-
-
Cevahir, N.1
Demir, M.2
Kaleli, I.3
Gurbuz, M.4
Tikvesli, S.5
-
10
-
-
4043056616
-
In silico design of clinical trials: a method coming of age
-
Clermont G., Bartels J., Kumar R., Constantine G., Vodovotz Y., Chow C. In silico design of clinical trials: a method coming of age. Crit. Care Med. 2004, 32:2061.
-
(2004)
Crit. Care Med.
, vol.32
, pp. 2061
-
-
Clermont, G.1
Bartels, J.2
Kumar, R.3
Constantine, G.4
Vodovotz, Y.5
Chow, C.6
-
11
-
-
0035050284
-
Bap, a Staphylococcus aureus surface protein involved in biofilm formation
-
Cucarella C., Solano C., Valle J., Amorena B., Lasa I., Penades J. Bap, a Staphylococcus aureus surface protein involved in biofilm formation. J. Bacteriol. 2001, 183:2888.
-
(2001)
J. Bacteriol.
, vol.183
, pp. 2888
-
-
Cucarella, C.1
Solano, C.2
Valle, J.3
Amorena, B.4
Lasa, I.5
Penades, J.6
-
12
-
-
34247388467
-
Harnessing bioinformatics to discover new vaccines
-
Davies M.N., Flower D.R. Harnessing bioinformatics to discover new vaccines. Drug Discovery Today 2007, 12:389-395.
-
(2007)
Drug Discovery Today
, vol.12
, pp. 389-395
-
-
Davies, M.N.1
Flower, D.R.2
-
13
-
-
0033589826
-
New fusion protein systems designed to give soluble expression in Escherichia coli
-
Davis G.D., Elisee C., Newham D.M., Harrison R.G. New fusion protein systems designed to give soluble expression in Escherichia coli. Biotechnol. Bioeng. 1999, 65:382-388.
-
(1999)
Biotechnol. Bioeng.
, vol.65
, pp. 382-388
-
-
Davis, G.D.1
Elisee, C.2
Newham, D.M.3
Harrison, R.G.4
-
14
-
-
0035859982
-
From genome to vaccine: in silico predictions
-
De Groot A.S., Bosma A., Chinai N., Frost J., Jesdale B.M., Gonzalez M.A., Martin W., Saint-Aubin C. From genome to vaccine: in silico predictions. ex vivo verification. Vaccine 2001, 19:4385-4395.
-
(2001)
ex vivo verification. Vaccine
, vol.19
, pp. 4385-4395
-
-
De Groot, A.S.1
Bosma, A.2
Chinai, N.3
Frost, J.4
Jesdale, B.M.5
Gonzalez, M.A.6
Martin, W.7
Saint-Aubin, C.8
-
15
-
-
0035015675
-
Multidrug efflux pumps: expression patterns and contribution to antibiotic resistance in Pseudomonas aeruginosa biofilms
-
De Kievit T.R., Parkins M.D., Gillis R.J., Srikumar R., Ceri H., Poole K., Iglewski B.H., Storey D.G. Multidrug efflux pumps: expression patterns and contribution to antibiotic resistance in Pseudomonas aeruginosa biofilms. Antimicrob. Agents Chemother. 2001, 45:1761.
-
(2001)
Antimicrob. Agents Chemother.
, vol.45
, pp. 1761
-
-
De Kievit, T.R.1
Parkins, M.D.2
Gillis, R.J.3
Srikumar, R.4
Ceri, H.5
Poole, K.6
Iglewski, B.H.7
Storey, D.G.8
-
16
-
-
33847031827
-
VaxiJen: a server for prediction of protective antigens, tumour antigens and subunit vaccines
-
Doytchinova I., Flower D. VaxiJen: a server for prediction of protective antigens, tumour antigens and subunit vaccines. BMC Bioinformatics 2007, 8:4.
-
(2007)
BMC Bioinformatics
, vol.8
, pp. 4
-
-
Doytchinova, I.1
Flower, D.2
-
17
-
-
3042666256
-
MUSCLE: multiple sequence alignment with high accuracy and high throughput
-
Edgar R.C. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res. 2004, 32.
-
(2004)
Nucleic Acids Res.
, pp. 32
-
-
Edgar, R.C.1
-
18
-
-
85046912234
-
Acinetobacter spp. in gunshot injuries
-
Elston J.W.T., Bannan C.L., Chih D.T., Boutlis C.S. Acinetobacter spp. in gunshot injuries. Emerging Infect. Dis. 2008, 14:178.
-
(2008)
Emerging Infect. Dis.
, vol.14
, pp. 178
-
-
Elston, J.W.T.1
Bannan, C.L.2
Chih, D.T.3
Boutlis, C.S.4
-
19
-
-
33845390816
-
The diversity of definitions of multidrug-resistant (MDR) and pandrug-resistant (PDR) Acinetobacter baumannii and Pseudomonas aeruginosa
-
Falagas M.E., Koletsi P.K., Bliziotis I.A. The diversity of definitions of multidrug-resistant (MDR) and pandrug-resistant (PDR) Acinetobacter baumannii and Pseudomonas aeruginosa. J. Med. Microbiol. 2006, 55:1619-1629.
-
(2006)
J. Med. Microbiol.
, vol.55
, pp. 1619-1629
-
-
Falagas, M.E.1
Koletsi, P.K.2
Bliziotis, I.A.3
-
20
-
-
38049165543
-
Localizing frustration in native proteins and protein assemblies
-
Ferreiro D.U., Hegler J.A., Komives E.A., Wolynes P.G. Localizing frustration in native proteins and protein assemblies. Proc. Natl. Acad. Sci. 2007, 104:19819.
-
(2007)
Proc. Natl. Acad. Sci.
, vol.104
, pp. 19819
-
-
Ferreiro, D.U.1
Hegler, J.A.2
Komives, E.A.3
Wolynes, P.G.4
-
21
-
-
33144460009
-
The epidemiology and control of Acinetobacter baumannii in health care facilities
-
Fournier P., Richet H. The epidemiology and control of Acinetobacter baumannii in health care facilities. Clin. Infect. Dis. 2006, 42:692-699.
-
(2006)
Clin. Infect. Dis.
, vol.42
, pp. 692-699
-
-
Fournier, P.1
Richet, H.2
-
22
-
-
65549118856
-
Regulation of Acinetobacter baumannii biofilm formation
-
Gaddy J.A., Actis L.A. Regulation of Acinetobacter baumannii biofilm formation. Future Microbiol. 2009, 4:273-278.
-
(2009)
Future Microbiol.
, vol.4
, pp. 273-278
-
-
Gaddy, J.A.1
Actis, L.A.2
-
23
-
-
27144505097
-
Protein identification and analysis tools on the expasy server
-
Humana Press, Full text-Copyright Humana Press, J.M. Walker (Ed.)
-
Gasteiger E., Hoogland C., Gattiker A., Duvaud S., Wilkins M., Appel R., Bairoch A. Protein identification and analysis tools on the expasy server. The Proteomics Protocols Handbook 2005, Humana Press, Full text-Copyright Humana Press. J.M. Walker (Ed.).
-
(2005)
The Proteomics Protocols Handbook
-
-
Gasteiger, E.1
Hoogland, C.2
Gattiker, A.3
Duvaud, S.4
Wilkins, M.5
Appel, R.6
Bairoch, A.7
-
24
-
-
73549086738
-
Multidrug-resistant Acinetobacter baumannii: mechanisms of virulence and resistance
-
Gordon N.C., Wareham D.W. Multidrug-resistant Acinetobacter baumannii: mechanisms of virulence and resistance. Int. J. Antimicrob. Agents 2010, 35:219-226.
-
(2010)
Int. J. Antimicrob. Agents
, vol.35
, pp. 219-226
-
-
Gordon, N.C.1
Wareham, D.W.2
-
25
-
-
0043123208
-
ESPript/ENDscript: extracting and rendering sequence and 3D information from atomic structures of proteins
-
Gouet P., Robert X., Courcelle E. ESPript/ENDscript: extracting and rendering sequence and 3D information from atomic structures of proteins. Nucleic Acids Res. 2003, 31:3320.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 3320
-
-
Gouet, P.1
Robert, X.2
Courcelle, E.3
-
26
-
-
4544388891
-
Novel gyrA and parC point mutations in two strains of Acinetobacter baumannii resistant to ciprofloxacin
-
Hamouda A., Amyes S.G.B. Novel gyrA and parC point mutations in two strains of Acinetobacter baumannii resistant to ciprofloxacin. J. Antimicrob. Chemother. 2004, 54:695.
-
(2004)
J. Antimicrob. Chemother.
, vol.54
, pp. 695
-
-
Hamouda, A.1
Amyes, S.G.B.2
-
27
-
-
0001960830
-
Expression of soluble heterologous Proteins via fusion with NusA protein
-
Harrison R.G. Expression of soluble heterologous Proteins via fusion with NusA protein. inNovation 2000, 11:4-7.
-
(2000)
inNovation
, vol.11
, pp. 4-7
-
-
Harrison, R.G.1
-
28
-
-
0042065283
-
Transition from reversible to irreversible attachment during biofilm formation by Pseudomonas fluorescens WCS365 requires an ABC transporter and a large secreted protein
-
Hinsa, S.M., Espinosa-Urgel, M., Ramos, J.L., O'Toole, G.A., 2003. Transition from reversible to irreversible attachment during biofilm formation by Pseudomonas fluorescens WCS365 requires an ABC transporter and a large secreted protein. Mol. Microbiol. 49, 905-918.
-
(2003)
Mol. Microbiol.
, vol.49
, pp. 905-918
-
-
Hinsa, S.M.1
Espinosa-Urgel, M.2
Ramos, J.L.3
O'Toole, G.A.4
-
29
-
-
33845248862
-
Analysis of antibiotic resistance genes in multidrug-resistant Acinetobacter sp. isolates from military and civilian patients treated at the Walter Reed Army Medical Center
-
Hujer K.M., Hujer A.M., Hulten E.A., Bajaksouzian S., Adams J.M., Donskey C.J., Ecker D.J., Massire C., Eshoo M.W., Sampath R. Analysis of antibiotic resistance genes in multidrug-resistant Acinetobacter sp. isolates from military and civilian patients treated at the Walter Reed Army Medical Center. Antimicrob. Agents Chemother. 2006, 50:4114.
-
(2006)
Antimicrob. Agents Chemother.
, vol.50
, pp. 4114
-
-
Hujer, K.M.1
Hujer, A.M.2
Hulten, E.A.3
Bajaksouzian, S.4
Adams, J.M.5
Donskey, C.J.6
Ecker, D.J.7
Massire, C.8
Eshoo, M.W.9
Sampath, R.10
-
31
-
-
78649969380
-
Demonstration of an outer membrane protein that is antigenically specific for Acinetobacter baumannii
-
Islam A.H.M.S., Singh K.K.B., Ismail A. Demonstration of an outer membrane protein that is antigenically specific for Acinetobacter baumannii. Diagn. Microbiol. Infect. Dis. 69 2011, 38-44.
-
(2011)
Diagn. Microbiol. Infect. Dis. 69
, pp. 38-44
-
-
Islam, A.H.M.S.1
Singh, K.K.B.2
Ismail, A.3
-
32
-
-
80052342097
-
An in silico DNA vaccine against Listeria monocytogenes
-
Jahangiri A., Rasooli I., Gargari S.L.M., Owlia P., Rahbar M.R., Amani J., Khalili S. An in silico DNA vaccine against Listeria monocytogenes. Vaccine 2011, 29:6948-6958.
-
(2011)
Vaccine
, vol.29
, pp. 6948-6958
-
-
Jahangiri, A.1
Rasooli, I.2
Gargari, S.L.M.3
Owlia, P.4
Rahbar, M.R.5
Amani, J.6
Khalili, S.7
-
33
-
-
4143120992
-
Multidrug-resistant Acinetobacter infections: an emerging challenge to clinicians
-
Jain R., Danziger L.H. Multidrug-resistant Acinetobacter infections: an emerging challenge to clinicians. Ann. Pharmacother. 2004, 38:1449.
-
(2004)
Ann. Pharmacother.
, vol.38
, pp. 1449
-
-
Jain, R.1
Danziger, L.H.2
-
34
-
-
43949088799
-
Theodorou D: Acinetobacter baumannii infections in a surgical intensive care unit: predictors of multi-drug resistance
-
Katsaragakis S., Markogiannakis H., Toutouzas K., Drimousis P., Larentzakis A., Theodoraki E.M. Theodorou D: Acinetobacter baumannii infections in a surgical intensive care unit: predictors of multi-drug resistance. World J. Surg. 2008, 32:1194-1202.
-
(2008)
World J. Surg.
, vol.32
, pp. 1194-1202
-
-
Katsaragakis, S.1
Markogiannakis, H.2
Toutouzas, K.3
Drimousis, P.4
Larentzakis, A.5
Theodoraki, E.M.6
-
35
-
-
32844461332
-
DNA microarray-based detection of nosocomial pathogenic Pseudomonas aeruginosa and Acinetobacter baumannii
-
Keum K.C., Yoo S.M., Lee S.Y., Chang K.H., Yoo N.C., Yoo W.M., Kim J.M., Choi J.Y., Kim J.S., Lee G. DNA microarray-based detection of nosocomial pathogenic Pseudomonas aeruginosa and Acinetobacter baumannii. Molec. Cell. Probes 2006, 20:42-50.
-
(2006)
Molec. Cell. Probes
, vol.20
, pp. 42-50
-
-
Keum, K.C.1
Yoo, S.M.2
Lee, S.Y.3
Chang, K.H.4
Yoo, N.C.5
Yoo, W.M.6
Kim, J.M.7
Choi, J.Y.8
Kim, J.S.9
Lee, G.10
-
36
-
-
0025605617
-
A semi-empirical method for prediction of antigenic determinants on protein antigens
-
Kolaskar A.S., Tongaonkar P.C. A semi-empirical method for prediction of antigenic determinants on protein antigens. FEBS Lett. 1990, 276:172-174.
-
(1990)
FEBS Lett.
, vol.276
, pp. 172-174
-
-
Kolaskar, A.S.1
Tongaonkar, P.C.2
-
38
-
-
33751104704
-
Improved method for predicting linear B-cell epitopes
-
Larsen J.E.P., Lund O., Nielsen M. Improved method for predicting linear B-cell epitopes. Immunome Res. 2006, 2:2.
-
(2006)
Immunome Res.
, vol.2
, pp. 2
-
-
Larsen, J.E.P.1
Lund, O.2
Nielsen, M.3
-
39
-
-
32644432879
-
Bap: A family of surface Proteins involved in biofilm formation
-
Lasa I., Penadés J.R. Bap: A family of surface Proteins involved in biofilm formation. Res. Microbiol. 2006, 157:99-107.
-
(2006)
Res. Microbiol.
, vol.157
, pp. 99-107
-
-
Lasa, I.1
Penadés, J.R.2
-
40
-
-
33750149652
-
Biofilm-associated proteins
-
Latasa C., Solano C., Penadés J.R., Lasa I. Biofilm-associated proteins. C.R. Biol. 2006, 329:849-857.
-
(2006)
C.R. Biol.
, vol.329
, pp. 849-857
-
-
Latasa, C.1
Solano, C.2
Penadés, J.R.3
Lasa, I.4
-
41
-
-
28244447376
-
BapA, a large secreted protein required for biofilm formation and host colonization of Salmonella enterica serovar Enteritidis
-
Latasa C., Roux A., Toledo-Arana A., Ghigo J.M., Gamazo C., Penadés J.R., Lasa I. BapA, a large secreted protein required for biofilm formation and host colonization of Salmonella enterica serovar Enteritidis. Molec. Microbiol. 2005, 58:1322-1339.
-
(2005)
Molec. Microbiol.
, vol.58
, pp. 1322-1339
-
-
Latasa, C.1
Roux, A.2
Toledo-Arana, A.3
Ghigo, J.M.4
Gamazo, C.5
Penadés, J.R.6
Lasa, I.7
-
42
-
-
36849057982
-
Capacity of multidrug-resistant clinical isolates of Acinetobacter baumannii to form biofilm and adhere to epithelial cell surfaces
-
Lee H.W., Koh Y.M., Kim J., Lee J.C., Lee Y.C., Seol S.Y., Cho D.T. Capacity of multidrug-resistant clinical isolates of Acinetobacter baumannii to form biofilm and adhere to epithelial cell surfaces. Clin. Microbiol. Infect. 2008, 14:49-54.
-
(2008)
Clin. Microbiol. Infect.
, vol.14
, pp. 49-54
-
-
Lee, H.W.1
Koh, Y.M.2
Kim, J.3
Lee, J.C.4
Lee, Y.C.5
Seol, S.Y.6
Cho, D.T.7
-
43
-
-
0035704921
-
In silico comparison of the transcriptome derived from purified normal breast cells and breast tumor cell lines reveals candidate upregulated genes in breast tumor cells
-
Leerkes M.R., Caballero O.L., Mackay A., Torloni H., O'Hare M.J., Simpson A.J.G., de Souza S.J. In silico comparison of the transcriptome derived from purified normal breast cells and breast tumor cell lines reveals candidate upregulated genes in breast tumor cells. Genomics 2002, 79:257-265.
-
(2002)
Genomics
, vol.79
, pp. 257-265
-
-
Leerkes, M.R.1
Caballero, O.L.2
Mackay, A.3
Torloni, H.4
O'Hare, M.J.5
Simpson, A.J.G.6
de Souza, S.J.7
-
44
-
-
0018093765
-
Conformational preferences of amino acids in globular proteins
-
Levitt M. Conformational preferences of amino acids in globular proteins. Biochemistry 1978, 17:4277-4285.
-
(1978)
Biochemistry
, vol.17
, pp. 4277-4285
-
-
Levitt, M.1
-
45
-
-
59349093727
-
Distribution of the multidrug efflux pump genes, adeABC, adeDE and adeIJK, and class 1 integron genes in multiple-antimicrobial-resistant clinical isolates of Acinetobacter baumannii-Acinetobacter calcoaceticus complex
-
Lin L., Ling B.D., Li X.Z. Distribution of the multidrug efflux pump genes, adeABC, adeDE and adeIJK, and class 1 integron genes in multiple-antimicrobial-resistant clinical isolates of Acinetobacter baumannii-Acinetobacter calcoaceticus complex. Int. J. Antimicrob. Agents 2009, 33:27-32.
-
(2009)
Int. J. Antimicrob. Agents
, vol.33
, pp. 27-32
-
-
Lin, L.1
Ling, B.D.2
Li, X.Z.3
-
46
-
-
38649096610
-
Identification and characterization of an Acinetobacter baumannii biofilm-associated protein
-
Loehfelm T.W., Luke N.R., Campagnari A.A. Identification and characterization of an Acinetobacter baumannii biofilm-associated protein. J. Bacteriol. 2008, 190:1036-1044.
-
(2008)
J. Bacteriol.
, vol.190
, pp. 1036-1044
-
-
Loehfelm, T.W.1
Luke, N.R.2
Campagnari, A.A.3
-
47
-
-
34948892056
-
Role of the rapA gene in controlling antibiotic resistance of Escherichia coli biofilms
-
Lynch S., Dixon L., Benoit M., Brodie E., Keyhan M., Hu P., Ackerley D., Andersen G., Matin A. Role of the rapA gene in controlling antibiotic resistance of Escherichia coli biofilms. Antimicrob. Agents Chemother. 2007, 51:3650.
-
(2007)
Antimicrob. Agents Chemother.
, vol.51
, pp. 3650
-
-
Lynch, S.1
Dixon, L.2
Benoit, M.3
Brodie, E.4
Keyhan, M.5
Hu, P.6
Ackerley, D.7
Andersen, G.8
Matin, A.9
-
48
-
-
60349108749
-
The developmental model of microbial biofilms: ten years of a paradigm up for review
-
Monds R., O'Toole G. The developmental model of microbial biofilms: ten years of a paradigm up for review. Trends Microbiol. 17 2009, 73-87.
-
(2009)
Trends Microbiol. 17
, pp. 73-87
-
-
Monds, R.1
O'Toole, G.2
-
49
-
-
58849094010
-
Multidrug-resistant Acinetobacter baumannii in New York City-10 years into the epidemic
-
Morgan D.J., Weisenberg S.A., Augenbraun M.H., Calfee D.P., Currie B.P., Furuya E.Y., Holzman R., Montecalvo M.C., Phillips M., Polsky B., Sepkowitz K.A. Multidrug-resistant Acinetobacter baumannii in New York City-10 years into the epidemic. Infect. Control Hosp. Epidemiol. 2009, 30:196-197.
-
(2009)
Infect. Control Hosp. Epidemiol.
, vol.30
, pp. 196-197
-
-
Morgan, D.J.1
Weisenberg, S.A.2
Augenbraun, M.H.3
Calfee, D.P.4
Currie, B.P.5
Furuya, E.Y.6
Holzman, R.7
Montecalvo, M.C.8
Phillips, M.9
Polsky, B.10
Sepkowitz, K.A.11
-
50
-
-
69849095169
-
Automated detection of conformational epitopes using phage display peptide sequences
-
Negi S.S., Braun W. Automated detection of conformational epitopes using phage display peptide sequences. Bioinformatics Biol. Insights 2009, 3:71.
-
(2009)
Bioinformatics Biol. Insights
, vol.3
, pp. 71
-
-
Negi, S.S.1
Braun, W.2
-
51
-
-
77954293798
-
CPHmodels-3.0óremote homology modeling using structure-guided sequence profiles
-
Nielsen M., Lundegaard C., Lund O., Petersen T.N. CPHmodels-3.0óremote homology modeling using structure-guided sequence profiles. Nucleic Acids Res. 2010, 38:W576.
-
(2010)
Nucleic Acids Res.
, vol.38
-
-
Nielsen, M.1
Lundegaard, C.2
Lund, O.3
Petersen, T.N.4
-
52
-
-
58149308157
-
Evaluation of an in silico predicted specific and immunogenic antigen from the OmcB protein for the serodiagnosis of Chlamydia trachomatis infections
-
Olfa, F.G., Radhouane, G., Abir, Z., Boutheina, G., Jalel, G., Ahmed, R., Adnene, H., 2008. Evaluation of an in silico predicted specific and immunogenic antigen from the OmcB protein for the serodiagnosis of Chlamydia trachomatis infections. BMC Microbiol. 8.
-
(2008)
BMC Microbiol
, vol.8
-
-
Olfa, F.G.1
Radhouane, G.2
Abir, Z.3
Boutheina, G.4
Jalel, G.5
Ahmed, R.6
Adnene, H.7
-
53
-
-
0023055775
-
New hydrophilicity scale derived from high-performance liquid chromatography peptide retention data: correlation of predicted surface residues with antigenicity and X-ray-derived accessible sites
-
Parker J., Guo D., Hodges R. New hydrophilicity scale derived from high-performance liquid chromatography peptide retention data: correlation of predicted surface residues with antigenicity and X-ray-derived accessible sites. Biochemistry 1986, 25:5425-5432.
-
(1986)
Biochemistry
, vol.25
, pp. 5425-5432
-
-
Parker, J.1
Guo, D.2
Hodges, R.3
-
54
-
-
0033551248
-
Assigning protein functions by comparative genome analysis: protein phylogenetic profiles
-
Pellegrini M., Marcotte E.M., Thompson M.J., Eisenberg D., Yeates T.O. Assigning protein functions by comparative genome analysis: protein phylogenetic profiles. Proc. Natl. Acad. Sci. USA 1999, 96:4285.
-
(1999)
Proc. Natl. Acad. Sci. USA
, vol.96
, pp. 4285
-
-
Pellegrini, M.1
Marcotte, E.M.2
Thompson, M.J.3
Eisenberg, D.4
Yeates, T.O.5
-
55
-
-
0026350055
-
Predicting location of continuous epitopes in proteins from their primary structures
-
Pellequer J., Westhof E., Van Regenmortel M. Predicting location of continuous epitopes in proteins from their primary structures. Meth. Enzymol. 1991, 203:176-201.
-
(1991)
Meth. Enzymol.
, vol.203
, pp. 176-201
-
-
Pellequer, J.1
Westhof, E.2
Van Regenmortel, M.3
-
56
-
-
77954557401
-
In silico analysis of antibody triggering biofilm associated protein in Acinetobacter baumannii
-
Rahbar M.R., Rasooli I., Mousavi Gargari S.L., Amani J., Fattahian Y. In silico analysis of antibody triggering biofilm associated protein in Acinetobacter baumannii. J. Theor. Biol. 2010, 266:275-290.
-
(2010)
J. Theor. Biol.
, vol.266
, pp. 275-290
-
-
Rahbar, M.R.1
Rasooli, I.2
Mousavi Gargari, S.L.3
Amani, J.4
Fattahian, Y.5
-
57
-
-
56849091862
-
Antimicrobial resistance in Europe and its potential impact on empirical therapy
-
Rossolini G.M., Mantengoli E. Antimicrobial resistance in Europe and its potential impact on empirical therapy. Clin. Microbiol. Infect. 2008, 14:2-8.
-
(2008)
Clin. Microbiol. Infect.
, vol.14
, pp. 2-8
-
-
Rossolini, G.M.1
Mantengoli, E.2
-
58
-
-
66749095489
-
Personalized cancer diagnostics and therapeutics
-
Roukos D.H. Personalized cancer diagnostics and therapeutics. Expert Rev. Molec. Diagn. 2009, 9:227-229.
-
(2009)
Expert Rev. Molec. Diagn.
, vol.9
, pp. 227-229
-
-
Roukos, D.H.1
-
59
-
-
77954065271
-
I-TASSER: a unified platform for automated protein structure and function prediction
-
Roy A., Kucukural A., Zhang Y. I-TASSER: a unified platform for automated protein structure and function prediction. Nat. Protoc. 2010, 5:725-738.
-
(2010)
Nat. Protoc.
, vol.5
, pp. 725-738
-
-
Roy, A.1
Kucukural, A.2
Zhang, Y.3
-
60
-
-
0032918222
-
Infection-derived Enterococcus faecalis strains are enriched in esp, a gene encoding a novel surface protein
-
Shankar V., Baghdayan A.S., Huycke M.M., Lindahl G., Gilmore M.S. Infection-derived Enterococcus faecalis strains are enriched in esp, a gene encoding a novel surface protein. Infect. Immunity 1999, 67:193-200.
-
(1999)
Infect. Immunity
, vol.67
, pp. 193-200
-
-
Shankar, V.1
Baghdayan, A.S.2
Huycke, M.M.3
Lindahl, G.4
Gilmore, M.S.5
-
61
-
-
0029654258
-
A dot-matrix program with dynamic threshold control suited for genomic DNA and protein sequence analysis
-
Sonnhammer E.L.L., Durbin R. A dot-matrix program with dynamic threshold control suited for genomic DNA and protein sequence analysis. Gene 1995, 167:GC1-GC10.
-
(1995)
Gene
, vol.167
-
-
Sonnhammer, E.L.L.1
Durbin, R.2
-
62
-
-
0036407233
-
Biofilms as complex differentiated communities
-
Stoodley P., Sauer K., Davies D.G., Costerton J.W. Biofilms as complex differentiated communities. Ann. Rev. Microbiol. 2002, 56:187-209.
-
(2002)
Ann. Rev. Microbiol.
, vol.56
, pp. 187-209
-
-
Stoodley, P.1
Sauer, K.2
Davies, D.G.3
Costerton, J.W.4
-
63
-
-
34347388470
-
UniRef: comprehensive and non-redundant UniProt reference clusters
-
Suzek B.E., Huang H., McGarvey P., Mazumder R., Wu C.H. UniRef: comprehensive and non-redundant UniProt reference clusters. Bioinformatics 2007, 23:1282.
-
(2007)
Bioinformatics
, vol.23
, pp. 1282
-
-
Suzek, B.E.1
Huang, H.2
McGarvey, P.3
Mazumder, R.4
Wu, C.H.5
-
64
-
-
78651324347
-
The STRING database in 2011: functional interaction networks of proteins, globally integrated and scored
-
Szklarczyk D., Franceschini A., Kuhn M., Simonovic M., Roth A., Minguez P., Doerks T., Stark M., Muller J., Bork P. The STRING database in 2011: functional interaction networks of proteins, globally integrated and scored. Nucleic Acids Res. 2011, 39:D561.
-
(2011)
Nucleic Acids Res.
, vol.39
-
-
Szklarczyk, D.1
Franceschini, A.2
Kuhn, M.3
Simonovic, M.4
Roth, A.5
Minguez, P.6
Doerks, T.7
Stark, M.8
Muller, J.9
Bork, P.10
-
65
-
-
0348047626
-
Enriching the sequence substitution matrix by structural information
-
Teodorescu O., Galor T., Pillardy J., Elber R. Enriching the sequence substitution matrix by structural information. Proteins Struct. Funct. Bioinformatics 2004, 54:41-48.
-
(2004)
Proteins Struct. Funct. Bioinformatics
, vol.54
, pp. 41-48
-
-
Teodorescu, O.1
Galor, T.2
Pillardy, J.3
Elber, R.4
-
66
-
-
34748889963
-
Multi-drug resistant Acinetobacter infections in critically injured Canadian forces soldiers
-
Tien H.C., Battad A., Bryce E.A., Fuller J., Mulvey M., Bernard K., Brisebois R., Doucet J.J., Rizoli S.B., Fowler R. Multi-drug resistant Acinetobacter infections in critically injured Canadian forces soldiers. BMC Infect. Dis. 2007, 7:95.
-
(2007)
BMC Infect. Dis.
, vol.7
, pp. 95
-
-
Tien, H.C.1
Battad, A.2
Bryce, E.A.3
Fuller, J.4
Mulvey, M.5
Bernard, K.6
Brisebois, R.7
Doucet, J.J.8
Rizoli, S.B.9
Fowler, R.10
-
67
-
-
0346252347
-
Attachment to and biofilm formation on abiotic surfaces by Acinetobacter baumannii: involvement of a novel chaperone-usher pili assembly system
-
Tomaras A.P., Dorsey C.W., Edelmann R.E., Actis L.A. Attachment to and biofilm formation on abiotic surfaces by Acinetobacter baumannii: involvement of a novel chaperone-usher pili assembly system. Microbiology 2003, 149:3473-3484.
-
(2003)
Microbiology
, vol.149
, pp. 3473-3484
-
-
Tomaras, A.P.1
Dorsey, C.W.2
Edelmann, R.E.3
Actis, L.A.4
-
68
-
-
0029686176
-
Biofilm formation by Acinetobacter baumannii
-
Vidal R., Dominguez M., Urrutia H., Bello H., Gonzalez G., Garcia A., Zemelman R. Biofilm formation by Acinetobacter baumannii. Microbios 1996, 86:49-58.
-
(1996)
Microbios
, vol.86
, pp. 49-58
-
-
Vidal, R.1
Dominguez, M.2
Urrutia, H.3
Bello, H.4
Gonzalez, G.5
Garcia, A.6
Zemelman, R.7
-
69
-
-
0031297895
-
Effect of imipenem and sulbactam on sessile cells of Acinetobacter baumannii growing in biofilm
-
Vidal R., Dominguez M., Urrutia H., Bello H., Garcia A., Gonzalez G., Zemelman R. Effect of imipenem and sulbactam on sessile cells of Acinetobacter baumannii growing in biofilm. Microbios 1997, 91:79-87.
-
(1997)
Microbios
, vol.91
, pp. 79-87
-
-
Vidal, R.1
Dominguez, M.2
Urrutia, H.3
Bello, H.4
Garcia, A.5
Gonzalez, G.6
Zemelman, R.7
-
70
-
-
74249093489
-
Prediction of ligand binding sites using homologous structures and conservation at CASP8
-
Wass M.N., Sternberg M.J. Prediction of ligand binding sites using homologous structures and conservation at CASP8. Proteins 2009, 77(suppl. 9):147-151.
-
(2009)
Proteins
, vol.77
, Issue.SUPPL. 9
, pp. 147-151
-
-
Wass, M.N.1
Sternberg, M.J.2
-
71
-
-
34547566446
-
ProSA-web: interactive web service for the recognition of errors in three-dimensional structures of proteins
-
Wiederstein M., Sippl M.J. ProSA-web: interactive web service for the recognition of errors in three-dimensional structures of proteins. Nucleic Acids Res. 2007, 35:W407.
-
(2007)
Nucleic Acids Res.
, vol.35
-
-
Wiederstein, M.1
Sippl, M.J.2
-
73
-
-
34250851687
-
LOMETS: a local meta-threading-server for protein structure prediction
-
Wu S., Zhang Y. LOMETS: a local meta-threading-server for protein structure prediction. Nucleic Acids Res. 2007, 35:3375.
-
(2007)
Nucleic Acids Res.
, vol.35
, pp. 3375
-
-
Wu, S.1
Zhang, Y.2
-
74
-
-
46049083393
-
Involvement of a novel efflux system in biofilm-specific resistance to antibiotics
-
Zhang L., Mah T.F. Involvement of a novel efflux system in biofilm-specific resistance to antibiotics. J. Bacteriol. 2008, 190:4447.
-
(2008)
J. Bacteriol.
, vol.190
, pp. 4447
-
-
Zhang, L.1
Mah, T.F.2
-
75
-
-
0036517041
-
Characterization of intertype specific epitopes on adenoviruses hexon. [Zhonghua shi yan he lin chuang bing du xue za zhi=Zhonghua shiyan he linchuang bingduxue zazhi=Chinese]
-
Zhang T., Xin R., Zhang Q., Bao Y., Wu J. Characterization of intertype specific epitopes on adenoviruses hexon. [Zhonghua shi yan he lin chuang bing du xue za zhi=Zhonghua shiyan he linchuang bingduxue zazhi=Chinese]. J. Exp. Clin. Virol. 2002, 16:44.
-
(2002)
J. Exp. Clin. Virol.
, vol.16
, pp. 44
-
-
Zhang, T.1
Xin, R.2
Zhang, Q.3
Bao, Y.4
Wu, J.5
-
76
-
-
64549115839
-
Protein structure prediction: when is it useful?
-
Zhang Y. Protein structure prediction: when is it useful?. Curr. Opinion Struct. Biol. 19 2009, 145-155.
-
(2009)
Curr. Opinion Struct. Biol. 19
, pp. 145-155
-
-
Zhang, Y.1
-
77
-
-
10344232638
-
Scoring function for automated assessment of protein structure template quality
-
Zhang Y., Skolnick J. Scoring function for automated assessment of protein structure template quality. Proteins-N.Y. 2004, 57:702-710.
-
(2004)
Proteins-N.Y.
, vol.57
, pp. 702-710
-
-
Zhang, Y.1
Skolnick, J.2
|