BcePred: Prediction of continuous B-cell epitopes in antigenic sequences using physico-chemical properties

Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)

Volumn 3239, Issue , 2004, Pages 197-204

  Saha, Sudipto ^a   Raghava, G P S ^a  

^a INSTITUTE OF MICROBIAL TECHNOLOGY   (India)

Author keywords

[No Author keywords available]

Indexed keywords

ANTIGENS; CELLS; CHEMICAL PROPERTIES; CYTOLOGY; FORECASTING;

NON-REDUNDANT; PEPTIDE VACCINES; PHYSICO-CHEMICAL PROPERTIES OF AMINO ACIDS; PHYSICOCHEMICAL PROPERTY; PREDICTION-BASED; SINGLE RESIDUE; SWISS-PROT; WEB SERVERS;

EPITOPES;

EID: 35048872790     PISSN: 03029743     EISSN: 16113349     Source Type: Book Series    
DOI: 10.1007/978-3-540-30220-9_16     Document Type: Article

References (17)

1. Nicholson, B.H.: Experimental determination of immunogenic sites. In "Synthetic Vaccines", Published by Blackwell scientific publications, London. (1994) 137-168.
2. Flower, D.R.: Towards in silico prediction of immunogenic epitopes. TRENDS in immunology, 24 (2003) 667-674
3. Pellequer, J.L., Westhof, E. and Regenmortel, M.H.V.: Predicting location of continuous epitopes in proteins from their primary structures. Methods in enzymology, 203 (1991) 176-201.
4. Hopp, T.P. and Woods, R.K.: Predictions of protein antigenic determinants from amino acid sequences. Proc. Natl. Acad. Sci. USA., 78 (1981) 3824-3828.
5. Parker, J.M.D., Guo, D. and Hodges, R.S.: New hydrophilicity scale derived from high-performance liquid chromatography peptide retention data: correlation of predicted surface residues with antigenicity and X-ray-derived accessible sites. Biochemistry, 25 (1986) 5425-5432.
6. Karplus, P.A. and Schulz, G.E.: Prediction of chain flexibility in proteins: a tool for the selection of peptide antigen. Naturwissenschaften, 72 (1985) 212-213.
7. Emini, E.A., Hughes, J.V., Perlow, D.S. and Boger, J.: Induction of hepatitis A virus-neutralizing antibody by a virus-specific synthetic peptide. J.Virol., 55 (1985) 836-839.
8. Kolaskar, A.S. and Tongaonkar, P.C.: A semi-emperical method for prediction of antigenic determinants on protein antigens. FEBS, 276 (1990) 172-174.
9. Pellequer, J-L., Westhof, E. and Regenmortel M.H.V.: Correlation between the location of antigenic sites and the prediction of turns in proteins Immunol.Lett., 36, (1993) 83-99.
10. Pellequer, J.L and Wasthof.: PREDITOP: A program for antigenicity prediction. J. Mol. Graphics., 11 (1993) 204-210.
11. Alix AJ. (1999) Predictive estimation of protein linear epitopes by using the program PEOPLE. Vaccine, 18, 311-314.
12. Odorico, M. and Pellequer, J.L. (2003) BEPITOPE: predicting the location of continuous epitope and patterns in proteins. J Mol Recognit., 16, 20-22.
13. Saha, S., Bhasin, M. and Raghava, G.P.S.: Bcipep: A database of B cell epitopes. (2004) (Submitted)
14. Bairoch, A. and Apweiler, R.: The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000. Nucleic Acids Res., 28 (2000) 45-48.
15. Janin, J. and Wodak, S.: Conformation of amino acid side-chains in proteins. J.Mol.Biol., 125 (1978) 357-86.
16. Ponnuswamy, P.K., Prabhakaran, M. and Manavalan, P.: Hydrophobic packing and spatial arrangements of amino acid residues in globular proteins. Biochim.Biophys.Acta., 623, (1980) 301-316.
17. Deleo, J.M.: Proceedings of the Second International Symposium on Uncertainity Modelling and Analusis. IEEE. Computer Society Press, College Park, MD. (1993) 318-325.