메뉴 건너뛰기




Volumn 111, Issue 36, 2014, Pages 13040-13045

Ligand- and mutation-induced conformational selection in the CCR5 chemokine G protein-coupled receptor

Author keywords

Conformational ensemble; Functional selectivity; GEnSeMBLE; Ligand protein binding prediction; Protein structure prediction

Indexed keywords

CHEMOKINE RECEPTOR CCR5; CYCLOHEXANE DERIVATIVE; LIGAND; MARAVIROC; MUTANT PROTEIN; TRIAZOLE DERIVATIVE;

EID: 84906968883     PISSN: 00278424     EISSN: 10916490     Source Type: Journal    
DOI: 10.1073/pnas.1413216111     Document Type: Article
Times cited : (34)

References (28)
  • 1
    • 15844389650 scopus 로고    scopus 로고
    • HIV-1 entry into CD4+ cells is mediated by the chemokine receptor CC-CKR-5
    • Dragic T, et al. (1996) HIV-1 entry into CD4+ cells is mediated by the chemokine receptor CC-CKR-5. Nature 381(6584):667-673.
    • (1996) Nature , vol.381 , Issue.6584 , pp. 667-673
    • Dragic, T.1
  • 2
    • 27644510382 scopus 로고    scopus 로고
    • Maraviroc (UK-427,857), a potent, orally bioavailable, and selective small-molecule inhibitor of chemokine receptor CCR5 with broad-spectrum anti-human immunodeficiency virus type 1 activity
    • Dorr P, et al. (2005) Maraviroc (UK-427,857), a potent, orally bioavailable, and selective small-molecule inhibitor of chemokine receptor CCR5 with broad-spectrum anti-human immunodeficiency virus type 1 activity. Antimicrob Agents Chemother 49(11):4721-4732.
    • (2005) Antimicrob Agents Chemother , vol.49 , Issue.11 , pp. 4721-4732
    • Dorr, P.1
  • 3
    • 78651075863 scopus 로고    scopus 로고
    • An imidazopiperidine series of CCR5 antagonists for the treatment of HIV: The discovery of N-(1S)-1-(3-fluorophenyl)-3-[(3-endo)-3-(5-isobutyryl-2-methyl-4,5,6,7-tetrahydro-1H-imidazo[4,5-c]pyridin-1-yl)-8-azabicyclo[3.2.1] oct-8-yl]propylacetamide (PF-232798)
    • Stupple PA, et al. (2011) An imidazopiperidine series of CCR5 antagonists for the treatment of HIV: The discovery of N-(1S)-1-(3-fluorophenyl)-3-[(3-endo)-3-(5-isobutyryl-2-methyl-4,5,6,7-tetrahydro-1H-imidazo[4,5-c]pyridin-1-yl)-8-azabicyclo[3.2.1] oct-8-yl]propylacetamide (PF-232798). J Med Chem 54(1):67-77.
    • (2011) J Med Chem , vol.54 , Issue.1 , pp. 67-77
    • Stupple, P.A.1
  • 4
    • 13044256383 scopus 로고    scopus 로고
    • A small-molecule, nonpeptide CCR5 antagonist with highly potent and selective anti-HIV-1 activity
    • Baba M, et al. (1999) A small-molecule, nonpeptide CCR5 antagonist with highly potent and selective anti-HIV-1 activity. Proc Natl Acad Sci USA 96(10):5698-5703.
    • (1999) Proc Natl Acad Sci USA , vol.96 , Issue.10 , pp. 5698-5703
    • Baba, M.1
  • 5
    • 0035860744 scopus 로고    scopus 로고
    • Novel low molecular weight spirodiketopiperazine derivatives potently inhibit R5 HIV-1 infection through their antagonistic effects on CCR5
    • Maeda K, et al. (2001) Novel low molecular weight spirodiketopiperazine derivatives potently inhibit R5 HIV-1 infection through their antagonistic effects on CCR5. J Biol Chem 276(37):35194-35200.
    • (2001) J Biol Chem , vol.276 , Issue.37 , pp. 35194-35200
    • Maeda, K.1
  • 6
    • 84862526546 scopus 로고    scopus 로고
    • Genetically encoded photo-cross-linkers map the binding site of an allosteric drug on a G protein-coupled receptor
    • Grunbeck A, et al. (2012) Genetically encoded photo-cross-linkers map the binding site of an allosteric drug on a G protein-coupled receptor. ACS Chem Biol 7(6):967-972.
    • (2012) ACS Chem Biol , vol.7 , Issue.6 , pp. 967-972
    • Grunbeck, A.1
  • 7
    • 84878557177 scopus 로고    scopus 로고
    • Use of G-protein-coupled and -uncoupled CCR5 receptors by CCR5 inhibitor-resistant and -sensitive human immunodeficiency virus type 1 variants
    • Berro R, et al. (2013) Use of G-protein-coupled and -uncoupled CCR5 receptors by CCR5 inhibitor-resistant and -sensitive human immunodeficiency virus type 1 variants. J Virol 87(12):6569-6581.
    • (2013) J Virol , vol.87 , Issue.12 , pp. 6569-6581
    • Berro, R.1
  • 8
    • 84884673669 scopus 로고    scopus 로고
    • Structure of the CCR5 chemokine receptor-HIV entry inhibitor maraviroc complex
    • Tan Q, et al. (2013) Structure of the CCR5 chemokine receptor-HIV entry inhibitor maraviroc complex. Science 341(6152):1387-1390.
    • (2013) Science , vol.341 , Issue.6152 , pp. 1387-1390
    • Tan, Q.1
  • 10
    • 84855710159 scopus 로고    scopus 로고
    • Bihelix: Towards de novo structure prediction of an ensemble of G-protein coupled receptor conformations
    • Abrol R, Bray JK, Goddard WA, III (2011) Bihelix: Towards de novo structure prediction of an ensemble of G-protein coupled receptor conformations. Proteins 80(2):505-518.
    • (2011) Proteins , vol.80 , Issue.2 , pp. 505-518
    • Abrol, R.1    Bray, J.K.2    Goddard, W.A.3
  • 11
    • 4344581120 scopus 로고    scopus 로고
    • The retinal conformation and its environment in rhodopsin in light of a new 2.2 A crystal structure
    • Okada T, et al. (2004) The retinal conformation and its environment in rhodopsin in light of a new 2.2 A crystal structure. J Mol Biol 342(2):571-583.
    • (2004) J Mol Biol , vol.342 , Issue.2 , pp. 571-583
    • Okada, T.1
  • 12
    • 36448995359 scopus 로고    scopus 로고
    • High-resolution crystal structure of an engineered human beta2-adrenergic G protein-coupled receptor
    • Cherezov V, et al. (2007) High-resolution crystal structure of an engineered human beta2-adrenergic G protein-coupled receptor. Science 318(5854):1258-1265.
    • (2007) Science , vol.318 , Issue.5854 , pp. 1258-1265
    • Cherezov, V.1
  • 13
    • 56749103466 scopus 로고    scopus 로고
    • The 2.6 angstrom crystal structure of a human A2A adenosine receptor bound to an antagonist
    • Jaakola VP, et al. (2008) The 2.6 angstrom crystal structure of a human A2A adenosine receptor bound to an antagonist. Science 322(5905):1211-1217.
    • (2008) Science , vol.322 , Issue.5905 , pp. 1211-1217
    • Jaakola, V.P.1
  • 14
    • 47949129742 scopus 로고    scopus 로고
    • Structure of a beta1-adrenergic G-protein-coupled receptor
    • Warne T, et al. (2008) Structure of a beta1-adrenergic G-protein-coupled receptor. Nature 454(7203):486-491.
    • (2008) Nature , vol.454 , Issue.7203 , pp. 486-491
    • Warne, T.1
  • 15
    • 58149267930 scopus 로고    scopus 로고
    • Flat-bottom strategy for improved accuracy in protein side-chain placements
    • Kam VWT, Goddard WA, III (2008) Flat-bottom strategy for improved accuracy in protein side-chain placements. J Chem Theory Comput 4(12):2160-2169.
    • (2008) J Chem Theory Comput , vol.4 , Issue.12 , pp. 2160-2169
    • Kam, V.W.T.1    Goddard, W.A.2
  • 16
    • 9144240095 scopus 로고
    • Dreiding: A generic force-field for molecular simulations
    • Mayo SL, Olafson BD, Goddard WA, III (1990) Dreiding: A generic force-field for molecular simulations. J Phys Chem-Us 94(26):8897-8909.
    • (1990) J Phys Chem-Us , vol.94 , Issue.26 , pp. 8897-8909
    • Mayo, S.L.1    Olafson, B.D.2    Goddard, W.A.3
  • 17
    • 84891928230 scopus 로고    scopus 로고
    • SuperBiHelix method for predicting the pleiotropic ensemble of G-protein-coupled receptor conformations
    • Bray JK, Abrol R, Goddard WA, III, Trzaskowski B, Scott CE (2014) SuperBiHelix method for predicting the pleiotropic ensemble of G-protein-coupled receptor conformations. Proc Natl Acad Sci USA 111(1):E72-E78.
    • (2014) Proc Natl Acad Sci USA , vol.111 , Issue.1 , pp. E72-E78
    • Bray, J.K.1    Abrol, R.2    Goddard, W.A.3    Trzaskowski, B.4    Scott, C.E.5
  • 18
    • 77950519682 scopus 로고    scopus 로고
    • Predicted 3D structures for adenosine receptors bound to ligands: Comparison to the crystal structure
    • Goddard WA, III, et al. (2010) Predicted 3D structures for adenosine receptors bound to ligands: comparison to the crystal structure. J Struct Biol 170(1):10-20.
    • (2010) J Struct Biol , vol.170 , Issue.1 , pp. 10-20
    • Goddard, W.A.1
  • 19
    • 79955722962 scopus 로고    scopus 로고
    • Predicted structures of agonist and antagonist bound complexes of adenosine A3 receptor
    • Kim S-K, Riley L, Abrol R, Jacobson KA, Goddard WA, III (2011) Predicted structures of agonist and antagonist bound complexes of adenosine A3 receptor. Proteins 79(6):1878-1897.
    • (2011) Proteins , vol.79 , Issue.6 , pp. 1878-1897
    • Kim, S.-K.1    Riley, L.2    Abrol, R.3    Jacobson, K.A.4    Goddard, W.A.5
  • 20
    • 66849115400 scopus 로고    scopus 로고
    • Elucidation of binding sites of dual antagonists in the human chemokine receptors CCR2 and CCR5
    • Hall SE, et al. (2009) Elucidation of binding sites of dual antagonists in the human chemokine receptors CCR2 and CCR5. Mol Pharmacol 75(6):1325-1336.
    • (2009) Mol Pharmacol , vol.75 , Issue.6 , pp. 1325-1336
    • Hall, S.E.1
  • 21
    • 33744954776 scopus 로고    scopus 로고
    • Structural and molecular interactions of CCR5 inhibitors with CCR5
    • Maeda K, et al. (2006) Structural and molecular interactions of CCR5 inhibitors with CCR5. J Biol Chem 281(18):12688-12698.
    • (2006) J Biol Chem , vol.281 , Issue.18 , pp. 12688-12698
    • Maeda, K.1
  • 22
    • 40849098660 scopus 로고    scopus 로고
    • Molecular interactions of CCR5 with major classes of small-molecule anti-HIV CCR5 antagonists
    • Kondru R, et al. (2008) Molecular interactions of CCR5 with major classes of small-molecule anti-HIV CCR5 antagonists. Mol Pharmacol 73(3):789-800.
    • (2008) Mol Pharmacol , vol.73 , Issue.3 , pp. 789-800
    • Kondru, R.1
  • 23
    • 79961205651 scopus 로고    scopus 로고
    • Multiple CCR5 conformations on the cell surface are used differentially by human immunodeficiency viruses resistant or sensitive to CCR5 inhibitors
    • Berro R, et al. (2011) Multiple CCR5 conformations on the cell surface are used differentially by human immunodeficiency viruses resistant or sensitive to CCR5 inhibitors. J Virol 85(16):8227-8240.
    • (2011) J Virol , vol.85 , Issue.16 , pp. 8227-8240
    • Berro, R.1
  • 24
    • 33748747498 scopus 로고    scopus 로고
    • Predictions of CCR1 chemokine receptor structure and BX 471 antagonist binding followed by experimental validation
    • Vaidehi N, et al. (2006) Predictions of CCR1 chemokine receptor structure and BX 471 antagonist binding followed by experimental validation. J Biol Chem 281(37):27613-27620.
    • (2006) J Biol Chem , vol.281 , Issue.37 , pp. 27613-27620
    • Vaidehi, N.1
  • 25
    • 0030043489 scopus 로고    scopus 로고
    • Cation-pi interactions in chemistry and biology: A new view of benzene, Phe, Tyr, and Trp
    • Dougherty DA (1996) Cation-pi interactions in chemistry and biology: A new view of benzene, Phe, Tyr, and Trp. Science 271(5246):163-168.
    • (1996) Science , vol.271 , Issue.5246 , pp. 163-168
    • Dougherty, D.A.1
  • 26
    • 84880698872 scopus 로고    scopus 로고
    • Computationally-predicted CB1 cannabinoid receptor mutants show distinct patterns of salt-bridges that correlate with their level of constitutive activity reflected in G protein coupling levels, thermal stability, and ligand binding
    • Ahn KH, Scott CE, Abrol R, Goddard WA, III, Kendall DA (2013) Computationally-predicted CB1 cannabinoid receptor mutants show distinct patterns of salt-bridges that correlate with their level of constitutive activity reflected in G protein coupling levels, thermal stability, and ligand binding. Proteins 81(8):1304-1317.
    • (2013) Proteins , vol.81 , Issue.8 , pp. 1304-1317
    • Ahn, K.H.1    Scott, C.E.2    Abrol, R.3    Goddard, W.A.4    Kendall, D.A.5
  • 27
    • 84873032055 scopus 로고    scopus 로고
    • Molecular basis for dramatic changes in cannabinoid CB1 G protein-coupled receptor activation upon single and double point mutations
    • Scott CE, Abrol R, Ahn KH, Kendall DA, Goddard WA, III (2013) Molecular basis for dramatic changes in cannabinoid CB1 G protein-coupled receptor activation upon single and double point mutations. Protein Sci 22(1):101-113.
    • (2013) Protein Sci , vol.22 , Issue.1 , pp. 101-113
    • Scott, C.E.1    Abrol, R.2    Ahn, K.H.3    Kendall, D.A.4    Goddard, W.A.5
  • 28
    • 84862776606 scopus 로고    scopus 로고
    • Characterizing and predicting the functional and conformational diversity of seven-transmembrane proteins
    • Abrol R, Kim S-K, Bray JK, Griffith AR, Goddard WA, III (2011) Characterizing and predicting the functional and conformational diversity of seven-transmembrane proteins. Methods 55(4):405-414.
    • (2011) Methods , vol.55 , Issue.4 , pp. 405-414
    • Abrol, R.1    Kim, S.-K.2    Bray, J.K.3    Griffith, A.R.4    Goddard, W.A.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.