-
1
-
-
58249088751
-
MicroRNAs: Target recognition and regulatory functions
-
Bartel DP. 2009. MicroRNAs: target recognition and regulatory functions. Cell 136: 215-233.
-
(2009)
Cell
, vol.136
, pp. 215-233
-
-
Bartel, D.P.1
-
2
-
-
0037134020
-
A system for stable expression of short interfering RNAs in mammalian cells
-
Brummelkamp TR, Bernards R, Agami R. 2002. A system for stable expression of short interfering RNAs in mammalian cells. Science 296: 550-553.
-
(2002)
Science
, vol.296
, pp. 550-553
-
-
Brummelkamp, T.R.1
Bernards, R.2
Agami, R.3
-
3
-
-
60149088848
-
Origins and mechanisms of miRNAs and siRNAs
-
Carthew RW, Sontheimer EJ. 2009. Origins and mechanisms of miRNAs and siRNAs. Cell 136: 642-655.
-
(2009)
Cell
, vol.136
, pp. 642-655
-
-
Carthew, R.W.1
Sontheimer, E.J.2
-
4
-
-
77953183812
-
A dicer-independent miRNA biogenesis pathway that requires Ago catalysis
-
Cheloufi S, Dos Santos CO, Chong MM, Hannon GJ. 2010. A dicer-independent miRNA biogenesis pathway that requires Ago catalysis. Nature 465: 584-589.
-
(2010)
Nature
, vol.465
, pp. 584-589
-
-
Cheloufi, S.1
Dos Santos, C.O.2
Chong, M.M.3
Hannon, G.J.4
-
5
-
-
77953897182
-
A novel miRNA processing pathway independent of Dicer requires Argonaute2 catalytic activity
-
Cifuentes D, Xue H, Taylor DW, Patnode H, Mishima Y, Cheloufi S, Ma E, Mane S, Hannon GJ, Lawson ND, et al. 2010. A novel miRNA processing pathway independent of Dicer requires Argonaute2 catalytic activity. Science 328: 1694-1698.
-
(2010)
Science
, vol.328
, pp. 1694-1698
-
-
Cifuentes, D.1
Xue, H.2
Taylor, D.W.3
Patnode, H.4
Mishima, Y.5
Cheloufi, S.6
Ma, E.7
Mane, S.8
Hannon, G.J.9
Lawson, N.D.10
-
6
-
-
77957796766
-
Absence of Dicer in monocytes and its regulation by HIV-1
-
Coley W, Van DR, Carpio L, Guendel I, Kehn-Hall K, Chevalier S, Narayanan A, Luu T, Lee N, Klase Z, et al. 2010. Absence of Dicer in monocytes and its regulation by HIV-1. J Biol Chem 285: 31930-31943.
-
(2010)
J Biol Chem
, vol.285
, pp. 31930-31943
-
-
Coley, W.1
Van, D.R.2
Carpio, L.3
Guendel, I.4
Kehn-Hall, K.5
Chevalier, S.6
Narayanan, A.7
Luu, T.8
Lee, N.9
Klase, Z.10
-
7
-
-
33644853907
-
The colorectal microRNAome
-
Cummins JM, He Y, Leary RJ, Pagliarini R, Diaz LA Jr, Sjoblom T, Barad O, Bentwich Z, Szafranska AE, Labourier E, et al. 2006. The colorectal microRNAome. Proc Natl Acad Sci 103: 3687-3692.
-
(2006)
Proc Natl Acad Sci
, vol.103
, pp. 3687-3692
-
-
Cummins, J.M.1
He, Y.2
Leary, R.J.3
Pagliarini, R.4
Diaz Jr., L.A.5
Sjoblom, T.6
Barad, O.7
Bentwich, Z.8
Szafranska, A.E.9
Labourier, E.10
-
8
-
-
84867564182
-
Right- and left-loop short shRNAs have distinct and unusual mechanisms of gene silencing
-
Dallas A, Ilves H, Ge Q, Kumar P, Shorenstein J, Kazakov SA, Cuellar TL, McManus MT, Behlke MA, Johnston BH. 2012. Right- and left-loop short shRNAs have distinct and unusual mechanisms of gene silencing. Nucleic Acids Res 40: 9255-9271.
-
(2012)
Nucleic Acids Res
, vol.40
, pp. 9255-9271
-
-
Dallas, A.1
Ilves, H.2
Ge, Q.3
Kumar, P.4
Shorenstein, J.5
Kazakov, S.A.6
Cuellar, T.L.7
McManus, M.T.8
Behlke, M.A.9
Johnston, B.H.10
-
9
-
-
84868097965
-
microRNAs associated with the different human Argonaute proteins
-
Dueck A, Ziegler C, Eichner A, Berezikov E, Meister G. 2012. microRNAs associated with the different human Argonaute proteins. Nucleic Acids Res 40: 9850-9862.
-
(2012)
Nucleic Acids Res
, vol.40
, pp. 9850-9862
-
-
Dueck, A.1
Ziegler, C.2
Eichner, A.3
Berezikov, E.4
Meister, G.5
-
10
-
-
38349169664
-
Mechanisms of post-transcriptional regulation by microRNAs: Are the answers in sight?
-
Filipowicz W, Bhattacharyya SN, Sonenberg N. 2008. Mechanisms of post-transcriptional regulation by microRNAs: Are the answers in sight? Nat Rev Genet 9: 102-114.
-
(2008)
Nat Rev Genet
, vol.9
, pp. 102-114
-
-
Filipowicz, W.1
Bhattacharyya, S.N.2
Sonenberg, N.3
-
11
-
-
75649143739
-
Minimal-length short hairpin RNAs: The relationship of structure and RNAi activity
-
Ge Q, Ilves H, Dallas A, Kumar P, Shorenstein J, Kazakov SA, Johnston BH. 2010. Minimal-length short hairpin RNAs: the relationship of structure and RNAi activity. RNA 16: 106-117.
-
(2010)
RNA
, vol.16
, pp. 106-117
-
-
Ge, Q.1
Ilves, H.2
Dallas, A.3
Kumar, P.4
Shorenstein, J.5
Kazakov, S.A.6
Johnston, B.H.7
-
12
-
-
0032570280
-
Stability of RNA hairpins closed by wobble base pairs
-
Giese MR, Betschart K, Dale T, Riley CK, Rowan C, Sprouse KJ, Serra MJ. 1998. Stability of RNA hairpins closed by wobble base pairs. Biochemistry 37: 1094-1100.
-
(1998)
Biochemistry
, vol.37
, pp. 1094-1100
-
-
Giese, M.R.1
Betschart, K.2
Dale, T.3
Riley, C.K.4
Rowan, C.5
Sprouse, K.J.6
Serra, M.J.7
-
13
-
-
84869037267
-
The loop position of shRNAs and pre-miRNAs is critical for the accuracy of dicer processing in vivo
-
Gu S, Jin L, Zhang Y, Huang Y, Zhang F, Valdmanis PN, Kay MA. 2012. The loop position of shRNAs and pre-miRNAs is critical for the accuracy of dicer processing in vivo. Cell 151: 900-911.
-
(2012)
Cell
, vol.151
, pp. 900-911
-
-
Gu, S.1
Jin, L.2
Zhang, Y.3
Huang, Y.4
Zhang, F.5
Valdmanis, P.N.6
Kay, M.A.7
-
15
-
-
33745612464
-
Widespread siRNA "off-target" transcript silencing mediated by seed region sequence complementarity
-
Jackson AL, Burchard J, Schelter J, Chau BN, Cleary M, Lim L, Linsley PS. 2006. Widespread siRNA "off-target" transcript silencing mediated by seed region sequence complementarity. RNA 12: 1179-1187.
-
(2006)
RNA
, vol.12
, pp. 1179-1187
-
-
Jackson, A.L.1
Burchard, J.2
Schelter, J.3
Chau, B.N.4
Cleary, M.5
Lim, L.6
Linsley, P.S.7
-
16
-
-
34748823119
-
Defining the optimal parameters for hairpin-based knockdown constructs
-
Li L, Lin X, Khvorova A, Fesik SW, Shen Y. 2007. Defining the optimal parameters for hairpin-based knockdown constructs. RNA 13: 1765-1774.
-
(2007)
RNA
, vol.13
, pp. 1765-1774
-
-
Li, L.1
Lin, X.2
Khvorova, A.3
Fesik, S.W.4
Shen, Y.5
-
17
-
-
44349164025
-
Inhibition of HIV-1 by multiple siRNAs expressed from a single microRNA polycistron
-
Liu YP, Haasnoot J, Ter Brake O, Berkhout B, Konstantinova P. 2008. Inhibition of HIV-1 by multiple siRNAs expressed from a single microRNA polycistron. Nucleic Acids Res 36: 2811-2824.
-
(2008)
Nucleic Acids Res
, vol.36
, pp. 2811-2824
-
-
Liu, Y.P.1
Haasnoot, J.2
Ter Brake, O.3
Berkhout, B.4
Konstantinova, P.5
-
18
-
-
84876030403
-
Dicer-independent processing of short hairpin RNAs
-
Liu YP, Schopman NC, Berkhout B. 2013. Dicer-independent processing of short hairpin RNAs. Nucleic Acids Res 41: 3723-3733.
-
(2013)
Nucleic Acids Res
, vol.41
, pp. 3723-3733
-
-
Liu, Y.P.1
Schopman, N.C.2
Berkhout, B.3
-
19
-
-
77955290050
-
Many ways to generate microRNA-like small RNAs: Non-canonical pathways for microRNA production
-
Miyoshi K, Miyoshi T, Siomi H. 2010. Many ways to generate microRNA-like small RNAs: non-canonical pathways for microRNA production. Mol Genet Genomics 284: 95-103.
-
(2010)
Mol Genet Genomics
, vol.284
, pp. 95-103
-
-
Miyoshi, K.1
Miyoshi, T.2
Siomi, H.3
-
20
-
-
40449139010
-
The MC-Fold and MC-Sym pipeline infers RNA structure from sequence data
-
Parisien M, Major F. 2008. The MC-Fold and MC-Sym pipeline infers RNA structure from sequence data. Nature 452: 51-55.
-
(2008)
Nature
, vol.452
, pp. 51-55
-
-
Parisien, M.1
Major, F.2
-
21
-
-
4544277478
-
Determinants of interferon-stimulated gene induction by RNAi vectors
-
Pebernard S, Iggo RD. 2004. Determinants of interferon-stimulated gene induction by RNAi vectors. Differentiation 72: 103-111.
-
(2004)
Differentiation
, vol.72
, pp. 103-111
-
-
Pebernard, S.1
Iggo, R.D.2
-
22
-
-
30644466345
-
Factor correction as a tool to eliminate between-session variation in replicate experiments: Application to molecular biology and retrovirology
-
Ruijter JM, Thygesen HH, Schoneveld OJ, Das AT, Berkhout B, Lamers WH. 2006. Factor correction as a tool to eliminate between-session variation in replicate experiments: application to molecular biology and retrovirology. Retrovirology 3: 1-8.
-
(2006)
Retrovirology
, vol.3
, pp. 1-8
-
-
Ruijter, J.M.1
Thygesen, H.H.2
Schoneveld, O.J.3
Das, A.T.4
Berkhout, B.5
Lamers, W.H.6
-
23
-
-
77951298966
-
Optimization of shRNA inhibitors by variation of the terminal loop sequence
-
Schopman NC, Liu YP, Konstantinova P, Ter Brake O, Berkhout B. 2010. Optimization of shRNA inhibitors by variation of the terminal loop sequence. Antiviral Res 86: 204-211.
-
(2010)
Antiviral Res
, vol.86
, pp. 204-211
-
-
Schopman, N.C.1
Liu, Y.P.2
Konstantinova, P.3
Ter Brake, O.4
Berkhout, B.5
-
24
-
-
58749096360
-
On the road to reading the RNA-interference code
-
Siomi H, Siomi MC. 2009. On the road to reading the RNA-interference code. Nature 457: 396-404.
-
(2009)
Nature
, vol.457
, pp. 396-404
-
-
Siomi, H.1
Siomi, M.C.2
-
25
-
-
33751001588
-
Silencing of HIV-1 with RNA interference: A multiple shRNA approach
-
Ter Brake O, Konstantinova P, Ceylan M, Berkhout B. 2006. Silencing of HIV-1 with RNA interference: a multiple shRNA approach. Mol Ther 14: 883-892.
-
(2006)
Mol Ther
, vol.14
, pp. 883-892
-
-
Ter Brake, O.1
Konstantinova, P.2
Ceylan, M.3
Berkhout, B.4
-
26
-
-
39849108343
-
Lentiviral vector design for multiple shRNA expression and durable HIV-1 inhibition
-
Ter Brake O, 't Hooft K, Liu YP, Centlivre M, von Eije KJ, Berkhout B. 2008. Lentiviral vector design for multiple shRNA expression and durable HIV-1 inhibition. Mol Ther 16: 557-564.
-
(2008)
Mol Ther
, vol.16
, pp. 557-564
-
-
Ter Brake, O.1
'T Hooft, K.2
Liu, Y.P.3
Centlivre, M.4
Von Eije, K.J.5
Berkhout, B.6
-
27
-
-
0036245743
-
Expanding small RNA interference
-
Tuschl T. 2002. Expanding small RNA interference. Nat Biotechnol 20: 446-448.
-
(2002)
Nat Biotechnol
, vol.20
, pp. 446-448
-
-
Tuschl, T.1
-
28
-
-
13844320402
-
HIV-1 can escape from RNA interference by evolving an alternative structure in its RNA genome
-
Westerhout EM, Ooms M, Vink M, Das AT, Berkhout B. 2005. HIV-1 can escape from RNA interference by evolving an alternative structure in its RNA genome. Nucleic Acids Res 33: 796-804.
-
(2005)
Nucleic Acids Res
, vol.33
, pp. 796-804
-
-
Westerhout, E.M.1
Ooms, M.2
Vink, M.3
Das, A.T.4
Berkhout, B.5
-
29
-
-
80052996141
-
Alternative miRNA biogenesis pathways and the interpretation of core miRNA pathway mutants
-
Yang JS, Lai EC. 2011. Alternative miRNA biogenesis pathways and the interpretation of core miRNA pathway mutants. Mol Cell 43: 892-903.
-
(2011)
Mol Cell
, vol.43
, pp. 892-903
-
-
Yang, J.S.1
Lai, E.C.2
-
30
-
-
77956995245
-
Conserved vertebrate mir-451 provides a platform for Dicer-independent, Ago2-mediated microRNA biogenesis
-
Yang JS, Maurin T, Robine N, Rasmussen KD, Jeffrey KL, Chandwani R, Papapetrou EP, Sadelain M, O'Carroll D, Lai EC. 2010. Conserved vertebrate mir-451 provides a platform for Dicer-independent, Ago2-mediated microRNA biogenesis. Proc Natl Acad Sci 107: 15163-15168.
-
(2010)
Proc Natl Acad Sci
, vol.107
, pp. 15163-15168
-
-
Yang, J.S.1
Maurin, T.2
Robine, N.3
Rasmussen, K.D.4
Jeffrey, K.L.5
Chandwani, R.6
Papapetrou, E.P.7
Sadelain, M.8
O'Carroll, D.9
Lai, E.C.10
-
31
-
-
84887608523
-
Poly(A)-specific ribonuclease mediates 3′-end trimming of Argonaute2-cleaved precursor microRNAs
-
Yoda M, Cifuentes D, Izumi N, Sakaguchi Y, Suzuki T, Giraldez AJ, Tomari Y. 2013. Poly(A)-specific ribonuclease mediates 3′-end trimming of Argonaute2-cleaved precursor microRNAs. Cell Rep 5: 715-726.
-
(2013)
Cell Rep
, vol.5
, pp. 715-726
-
-
Yoda, M.1
Cifuentes, D.2
Izumi, N.3
Sakaguchi, Y.4
Suzuki, T.5
Giraldez, A.J.6
Tomari, Y.7
-
32
-
-
0042121256
-
Mfold web server for nucleic acid folding and hybridization prediction
-
Zuker M. 2003. Mfold web server for nucleic acid folding and hybridization prediction. Nucleic Acids Res 31: 3406-3415.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 3406-3415
-
-
Zuker, M.1
|