The colorectal microRNAome

Proceedings of the National Academy of Sciences of the United States of America

Volumn 103, Issue 10, 2006, Pages 3687-3692

  Cummins, Jordan M ^a   He, Yiping ^a   Leary, Rebecca J ^a   Pagliarini, Ray ^a   Diaz Jr , Luis A ^a   Sjoblom, Tobias ^a   Barad, Omer ^b   Bentwich, Zvi ^b   Szafranska, Anna E ^c   Labourier, Emmanuel ^c   Raymond, Christopher K ^d   Roberts, Brian S ^d   Juhl, Hartmut ^e   Kinzler, Kenneth W ^a   Vogelstein, Bert ^a   Velculescu, Victor E ^a  

^a JOHNS HOPKINS UNIVERSITY   (United States)

^b ROSETTA GENOMICS LTD   (Israel)

^c APPLIED BIOSYSTEMS   (United States)

^d ROSETTA INPHARMATICS   (United States)

^e ISRAELITISCHES KRANKENHAUS   (Germany)

Author keywords

Colorectal cancer; Dicer; MicroRNA

Indexed keywords

MICRORNA; UNTRANSLATED RNA;

ARTICLE; CANCER CELL CULTURE; CLONING; COLORECTAL CANCER; CONTROLLED STUDY; DATA BASE; DICER GENE; EUKARYOTE; GENE; GENE DISRUPTION; GENE LOCUS; HUMAN; HUMAN CELL; HUMAN GENOME; HUMAN TISSUE; PRIORITY JOURNAL; RNA SEQUENCE; SEQUENCE ANALYSIS; SERIAL ANALYSIS OF GENE EXPRESSION;

BASE SEQUENCE; CELL LINE, TUMOR; COLON; COLORECTAL NEOPLASMS; DEAD-BOX RNA HELICASES; ENDORIBONUCLEASES; GENE EXPRESSION; GENE TARGETING; GENOME, HUMAN; HUMANS; MICRORNAS; NUCLEIC ACID CONFORMATION; RECTUM; RNA HELICASES; RNA, NEOPLASM;

EUKARYOTA;

EID: 33644853907     PISSN: 00278424     EISSN: None     Source Type: Journal    
DOI: 10.1073/pnas.0511155103     Document Type: Article

References (33)

1. Bartel, D. P. (2004) Cell 116, 281-297.
2. Griffiths-Jones, S. (2004) Nucleic Acids Res. 32, D109-111.
3. Bernstein, E., Caudy, A. A., Hammond, S. M. & Hannon, G. J. (2001) Nature 409, 363-366.
4. Lim, L. P., Glasner, M. E., Yekta, S., Burge, C. B. & Bartel, D. P. (2003) Science 299, 1540.
5. Bentwich, I., Avniel, A., Karov, Y., Aharonov, R., Gilad, S., Barad, O., Barzilai, A., Einat, P., Einav, U., Meiri, E., et al. (2005) Nat. Genet. 37, 766-770.
6. Michael, M. Z., SM, O. C., van Hoist Pellekaan, N. G., Young, G. P. & James, R. J. (2003) Mol. Cancer Res. 1, 882-891.
7. Lagos-Quintana, M., Rauhut, R., Meyer, J., Borkhardt, A. & Tuschl, T. (2003) RNA 9, 175-179.
8. Lagos-Quintana, M., Rauhut, R., Lendeckel, W. & Tuschl, T. (2001) Science 294, 853-858.
9. Lau, N. C., Lim, L. P., Weinstein, E. G. & Bartel, D. P. (2001) Science 294, 858-862.
10. Lee, R. C. & Ambros, V. (2001) Science 294, 862-864.
11. Mourelatos, Z., Dostie, J., Paushkin, S., Sharma, A., Charroux, B., Abel, L., Rappsilber, J., Mann, M. & Dreyfuss, G. (2002) Genes Dev. 16, 720-728.
12. Dostie, J., Mourelatos, Z., Yang, M., Sharma, A. & Dreyfuss, G. (2003) RNA 9, 180-186.
13. Houbaviy, H. B., Murray, M. F. & Sharp, P. A. (2003) Dev. Cell 5, 351-358.
14. Kim, J., Krichevsky, A., Grad, Y., Hayes, G. D., Kosik, K. S., Church, G. M. & Ruvkun, G. (2004) Proc. Natl. Acad. Sci. USA 101, 360-365.
15. Kasashima, K., Nakamura, Y. & Kozu, T. (2004) Biochem. Biophys. Res. Commun. 322, 403-410.
16. Suh, M. R., Lee, Y., Kim, J. Y., Kim, S. K., Moon, S. H., Lee, J. Y., Cha, K. Y., Chung, H. M., Yoon, H. S., Moon, S. Y., et al. (2004) Dev. Biol. 270, 488-498.
17. Velculescu, V. E., Zhang, L., Vogelstein, B. & Kinzler, K. W. (1995) Science 270, 484-487.
18. Ambros, V., Bartel, B., Bartel, D. P., Burge, C. B., Carrington, J. C., Chen, X., Dreyfuss, G., Eddy, S. R., Griffiths-Jones, S., Marshall, M., et al. (2003) RNA 9, 277-279.
19. Barad, O., Meiri, E., Avniel, A., Aharonov, R., Barzilai, A., Bentwich, I., Einav, U., Gilad, S., Hurban, P., Karov, Y., et al. (2004) Genome Res. 14, 2486-2494.
20. Altuvia, Y., Landgraf, P., Lithwick, G., Elefant, N., Pfeffer, S., Aravin, A., Brownstein, M. J., Tuschl, T. & Margalit, H. (2005) Nucleic Acids Res. 33, 2697-2706.
21. Fukagawa, T., Nogami, M., Yoshikawa, M., Ikeno, M., Okazaki, T., Takami, Y., Nakayama, T. & Oshimura, M. (2004) Nat. Cell Biol. 6, 784-791.
22. Yang, W. J., Yang, D. D., Na, S., Sandusky, G. E., Zhang, Q. & Zhao, G. (2005) J. Biol. Chem. 280, 9330-9335.
23. Margulies, M., Egholm, M., Altman, W. E., Attiya, S., Bader, J. S., Bemben, L. A., Berka, J., Braverman, M. S., Chen, Y. J., Chen, Z., et al. (2005) Nature 437, 376-380.
24. Leamon, J. H., Lee, W. L., Tartaro, K. R., Lanza, J. R., Sarkis, G. J., de Winter, A. D., Berka, J., Weiner, M., Rothberg, J. M. & Lohman, K. L. (2003) Electrophoresis 24, 3769-3777.
25. Shendure, J., Mitra, R. D., Varma, C. & Church, G. M. (2004) Nat. Rev. Genet. 5, 335-344.
26. Zuker, M. (2003) Nucleic Acids Res. 31, 3406-3415.
27. Mathews, D. H., Sabina, J., Zuker, M. & Turner, D. H. (1999) J. Mol. Biol. 288, 911-940.
28. Siepel, A., Bejerano, G., Pedersen, J. S., Hinrichs, A. S., Hou, M., Rosenbloom, K., Clawson, H., Spieth, J., Hillier, L. W., Richards, S., et al. (2005) Genome Res 15, 1034-1050.
29. Berezikov, E., Guryev, V., van de Belt, J., Wienholds, E., Plasterk, R. H. & Cuppen, E. (2005) Cell 120, 21-24.
30. Hirata, R., Chamberlain, J., Dong, R. & Russell, D. W. (2002) Nat. Biotechnol. 20, 735-738.
31. Kohli, M., Rago, C., Lengauer, C., Kinzler, K. W. & Vogelstein, B. (2004) Nucleic Acids Res. 32, e3.
32. Romualdi, C., Bortoluzzi, S., D'Alessi, F. & Danieli, G. A. (2003) Physiol. Genomics 12, 159-162.
33. Raymond, C. K., Roberts, B. S., Garrett-Engele, P., Lim, L. P. & Johnson, J. M. (2005) RNA 11, 1737-1744.