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Volumn 111, Issue 34, 2014, Pages 12462-12467

Enhanced killing of antibiotic-resistant bacteria enabled by massively parallel combinatorial genetics

Author keywords

Combination therapy; Drug resistance; Multifactorial genetics; Synthetic biology; Systems biology

Indexed keywords

ANHYDROTETRACYCLINE; ANTIBIOTIC AGENT; CEFTRIAXONE; GENTAMICIN; IMIPENEM; METALLO BETA LACTAMASE; NEW DELHI METALLO BETA LACTAMASE 1; PIPERACILLIN PLUS TAZOBACTAM; TRANSCRIPTION FACTOR; UNCLASSIFIED DRUG; BETA LACTAMASE; BETA-LACTAMASE NDM-1; CARBAPENEM DERIVATIVE; ESCHERICHIA COLI PROTEIN;

EID: 84906678385     PISSN: 00278424     EISSN: 10916490     Source Type: Journal    
DOI: 10.1073/pnas.1400093111     Document Type: Article
Times cited : (31)

References (57)
  • 1
    • 84884597711 scopus 로고    scopus 로고
    • Centers for Disease Control and Prevention Available at Accessed July 21, 2014
    • Centers for Disease Control and Prevention (2013) Antibiotic resistance threats in the US. Available at www.cdc.gov/drugresistance/threat-report-2013/. Accessed July 21, 2014.
    • (2013) Antibiotic Resistance Threats in the US
  • 2
    • 33845903833 scopus 로고    scopus 로고
    • Drugs for bad bugs: Confronting the challenges of antibacterial discovery
    • DOI 10.1038/nrd2201, PII NRD2201
    • Payne DJ, Gwynn MN, Holmes DJ, Pompliano DL (2007) Drugs for bad bugs: Confronting the challenges of antibacterial discovery. Nat Rev Drug Discov 6(1):29-40. (Pubitemid 46020284)
    • (2007) Nature Reviews Drug Discovery , vol.6 , Issue.1 , pp. 29-40
    • Payne, D.J.1    Gwynn, M.N.2    Holmes, D.J.3    Pompliano, D.L.4
  • 3
    • 78649398544 scopus 로고    scopus 로고
    • Global spread of New Delhi metallo-β-lactamase 1
    • Leverstein-Van Hall MA, et al. (2010) Global spread of New Delhi metallo-β-lactamase 1. Lancet Infect Dis 10(12):830-831.
    • (2010) Lancet Infect Dis , vol.10 , Issue.12 , pp. 830-831
    • Leverstein-Van Hall, M.A.1
  • 5
    • 79953836804 scopus 로고    scopus 로고
    • New Delhi metallo-β-lactamase (NDM-1)-producing Klebsiella pneumoniae: Case report and laboratory detection strategies
    • Mochon AB, et al. (2011) New Delhi metallo-β-lactamase (NDM-1)-producing Klebsiella pneumoniae: Case report and laboratory detection strategies. J Clin Microbiol 49(4):1667-1670.
    • (2011) J Clin Microbiol , vol.49 , Issue.4 , pp. 1667-1670
    • Mochon, A.B.1
  • 6
    • 84876955225 scopus 로고    scopus 로고
    • When the most potent combination of antibiotics selects for the greatest bacterial load: The smile-frown transition
    • Pena-Miller R, et al. (2013) When the most potent combination of antibiotics selects for the greatest bacterial load: The smile-frown transition. PLoS Biol 11(4):e1001540.
    • (2013) PLoS Biol , vol.11 , Issue.4
    • Pena-Miller, R.1
  • 7
    • 77954614742 scopus 로고    scopus 로고
    • Rotating antibiotics selects optimally against antibiotic resistance, in theory
    • Beardmore RE, Peña-Miller R (2010) Rotating antibiotics selects optimally against antibiotic resistance, in theory. Math Biosci Eng 7(3):527-552.
    • (2010) Math Biosci Eng , vol.7 , Issue.3 , pp. 527-552
    • Beardmore, R.E.1    Peña-Miller, R.2
  • 8
    • 63849290890 scopus 로고    scopus 로고
    • Engineered bacteriophage targeting gene networks as adjuvants for antibiotic therapy
    • Lu TK, Collins JJ (2009) Engineered bacteriophage targeting gene networks as adjuvants for antibiotic therapy. Proc Natl Acad Sci USA 106(12):4629-4634.
    • (2009) Proc Natl Acad Sci USA , vol.106 , Issue.12 , pp. 4629-4634
    • Lu, T.K.1    Collins, J.J.2
  • 9
    • 4644351908 scopus 로고    scopus 로고
    • SOS response induction by beta-lactams and bacterial defense against antibiotic lethality
    • DOI 10.1126/science.1101630
    • Miller C, et al. (2004) SOS response induction by beta-lactams and bacterial defense against antibiotic lethality. Science 305(5690):1629-1631. (Pubitemid 39296359)
    • (2004) Science , vol.305 , Issue.5690 , pp. 1629-1631
    • Miller, C.1    Thomsen, L.E.2    Gaggero, C.3    Mosseri, R.4    Ingmer, H.5    Cohen, S.N.6
  • 12
    • 21344460325 scopus 로고    scopus 로고
    • Inhibition of mutation and combating the evolution of antibiotic resistance
    • Cirz RT, et al. (2005) Inhibition of mutation and combating the evolution of antibiotic resistance. PLoS Biol 3(6):e176.
    • (2005) PLoS Biol , vol.3 , Issue.6
    • Cirz, R.T.1
  • 13
    • 34548213103 scopus 로고    scopus 로고
    • A Common Mechanism of Cellular Death Induced by Bactericidal Antibiotics
    • DOI 10.1016/j.cell.2007.06.049, PII S0092867407008999
    • Kohanski MA, Dwyer DJ, Hayete B, Lawrence CA, Collins JJ (2007) A common mechanism of cellular death induced by bactericidal antibiotics. Cell 130(5):797-810. (Pubitemid 47332566)
    • (2007) Cell , vol.130 , Issue.5 , pp. 797-810
    • Kohanski, M.A.1    Dwyer, D.J.2    Hayete, B.3    Lawrence, C.A.4    Collins, J.J.5
  • 14
    • 33947247352 scopus 로고    scopus 로고
    • Gyrase inhibitors induce an oxidative damage cellular death pathway in Escherichia coli
    • Dwyer DJ, Kohanski MA, Hayete B, Collins JJ (2007) Gyrase inhibitors induce an oxidative damage cellular death pathway in Escherichia coli. Mol Syst Biol 3:91.
    • (2007) Mol Syst Biol , vol.3 , pp. 91
    • Dwyer, D.J.1    Kohanski, M.A.2    Hayete, B.3    Collins, J.J.4
  • 15
    • 84877292750 scopus 로고    scopus 로고
    • Spanning high-dimensional expression space using ribosome-binding site combinatorics
    • Zelcbuch L, et al. (2013) Spanning high-dimensional expression space using ribosome-binding site combinatorics. Nucleic Acids Res 41(9):e98.
    • (2013) Nucleic Acids Res , vol.41 , Issue.9
    • Zelcbuch, L.1
  • 16
    • 78651299341 scopus 로고    scopus 로고
    • RegulonDB version 7.0: Transcriptional regulation of Escherichia coli K-12 integrated within genetic sensory response units (Gensor Units)
    • Gama-Castro S, et al. (2011) RegulonDB version 7.0: Transcriptional regulation of Escherichia coli K-12 integrated within genetic sensory response units (Gensor Units). Nucleic Acids Res 39(Database issue):D98-D105.
    • (2011) Nucleic Acids Res , vol.39 , Issue.DATABASE ISSUE
    • Gama-Castro, S.1
  • 17
    • 0021449735 scopus 로고
    • Ceftriaxone. A review of its antibacterial activity, pharmacological properties and therapeutic use
    • Richards DM, Heel RC, Brogden RN, Speight TM, Avery GS (1984) Ceftriaxone. A review of its antibacterial activity, pharmacological properties and therapeutic use. Drugs 27(6):469-527.
    • (1984) Drugs , vol.27 , Issue.6 , pp. 469-527
    • Richards, D.M.1    Heel, R.C.2    Brogden, R.N.3    Speight, T.M.4    Avery, G.S.5
  • 18
    • 0031768793 scopus 로고    scopus 로고
    • A comparative study of levofloxacin and ceftriaxone in the treatment of hospitalized patients with pneumonia
    • DOI 10.1080/00365549850160710
    • Norrby SR, Petermann W, Willcox PA, Vetter N, Salewski E (1998) A comparative study of levofloxacin and ceftriaxone in the treatment of hospitalized patients with pneumonia. Scand J Infect Dis 30(4):397-404. (Pubitemid 28488229)
    • (1998) Scandinavian Journal of Infectious Diseases , vol.30 , Issue.4 , pp. 397-404
    • Norrby, S.R.1    Petermann, W.2    Willcox, P.A.3    Vetter, N.4    Salewski, E.5
  • 19
    • 77956285690 scopus 로고    scopus 로고
    • Illumina sequencing library preparation for highly multiplexed target capture and sequencing
    • pdb prot5448
    • Meyer M, Kircher M (2010) Illumina sequencing library preparation for highly multiplexed target capture and sequencing. Cold Spring Harbor protocols 2010(6):pdb prot5448.
    • (2010) Cold Spring Harbor Protocols 2010 , Issue.6
    • Meyer, M.1    Kircher, M.2
  • 22
    • 0028607158 scopus 로고
    • Review of piperacillin/tazobactam in the treatment of bacteremic infections and summary of clinical efficacy
    • Charbonneau P (1994) Review of piperacillin/tazobactam in the treatment of bacteremic infections and summary of clinical efficacy. Intensive Care Med 20(Suppl 3):S43-S48.
    • (1994) Intensive Care Med , vol.20 , Issue.SUPPL. 3
    • Charbonneau, P.1
  • 23
    • 33646568438 scopus 로고    scopus 로고
    • Complete set of ORF clones of Escherichia coli ASKA library (a complete set of E. coli K-12 ORF archive): Unique resources for biological research
    • Kitagawa M, et al. (2005) Complete set of ORF clones of Escherichia coli ASKA library (a complete set of E. coli K-12 ORF archive): Unique resources for biological research. DNA Res 12(5):291- 299.
    • (2005) DNA Res , vol.12 , Issue.5 , pp. 291-299
    • Kitagawa, M.1
  • 24
    • 84855894994 scopus 로고    scopus 로고
    • Reversing bacterial resistance to antibiotics by phage-mediated delivery of dominant sensitive genes
    • Edgar R, Friedman N, Molshanski-Mor S, Qimron U (2012) Reversing bacterial resistance to antibiotics by phage-mediated delivery of dominant sensitive genes. Appl Environ Microbiol 78(3):744-751.
    • (2012) Appl Environ Microbiol , vol.78 , Issue.3 , pp. 744-751
    • Edgar, R.1    Friedman, N.2    Molshanski-Mor, S.3    Qimron, U.4
  • 25
    • 70350145580 scopus 로고    scopus 로고
    • QseC-mediated dephosphorylation of QseB is required for expression of genes associated with virulence in uropathogenic Escherichia coli
    • Kostakioti M, Hadjifrangiskou M, Pinkner JS, Hultgren SJ (2009) QseC-mediated dephosphorylation of QseB is required for expression of genes associated with virulence in uropathogenic Escherichia coli. Mol Microbiol 73(6):1020-1031.
    • (2009) Mol Microbiol , vol.73 , Issue.6 , pp. 1020-1031
    • Kostakioti, M.1    Hadjifrangiskou, M.2    Pinkner, J.S.3    Hultgren, S.J.4
  • 26
    • 0033009562 scopus 로고    scopus 로고
    • The stationary-phase morphogene bolA from Escherichia coli is induced by stress during early stages of growth
    • DOI 10.1046/j.1365-2958.1999.01397.x
    • Santos JM, Freire P, VicenteM, Arraiano CM (1999) The stationary-phase morphogene bolA from Escherichia coli is induced by stress during early stages of growth. Mol Microbiol 32(4):789-798. (Pubitemid 29241519)
    • (1999) Molecular Microbiology , vol.32 , Issue.4 , pp. 789-798
    • Santos, J.M.1    Freire, P.2    Vicente, M.3    Arraiano, C.M.4
  • 27
    • 50249186849 scopus 로고    scopus 로고
    • Inhibition of transcription factors with small organic molecules
    • Berg T (2008) Inhibition of transcription factors with small organic molecules. Curr Opin Chem Biol 12(4):464-471.
    • (2008) Curr Opin Chem Biol , vol.12 , Issue.4 , pp. 464-471
    • Berg, T.1
  • 29
    • 84886993480 scopus 로고    scopus 로고
    • CRISPR interference (CRISPRi) for sequence-specific control of gene expression
    • Larson MH, et al. (2013) CRISPR interference (CRISPRi) for sequence-specific control of gene expression. Nat Protoc 8(11):2180-2196.
    • (2013) Nat Protoc , vol.8 , Issue.11 , pp. 2180-2196
    • Larson, M.H.1
  • 30
    • 84886488970 scopus 로고    scopus 로고
    • Tunable and multi-functional eukaryotic transcription factors based on CRISPR/Cas
    • Farzadfard F, Perli SD, Lu TK (2013) Tunable and multi-functional eukaryotic transcription factors based on CRISPR/Cas. ACS Synth Biol 2(10):604-613.
    • (2013) ACS Synth Biol , vol.2 , Issue.10 , pp. 604-613
    • Farzadfard, F.1    Perli, S.D.2    Lu, T.K.3
  • 31
    • 0036848086 scopus 로고    scopus 로고
    • Pharmacokinetics of lansoprazole, amoxicillin and clarithromycin after simulataneous and single administration
    • Mainz D, Borner K, Koeppe P, Kotwas J, Lode H (2002) Pharmacokinetics of lansoprazole, amoxicillin and clarithromycin after simultaneous and single administration. J Antimicrob Chemother 50(5):699-706. (Pubitemid 35331687)
    • (2002) Journal of Antimicrobial Chemotherapy , vol.50 , Issue.5 , pp. 699-706
    • Mainz, D.1    Borner, K.2    Koeppe, P.3    Kotwas, J.4    Lode, H.5
  • 32
    • 0022491927 scopus 로고
    • Kinetics of antimicrobial activity
    • Vogelman B, Craig WA (1986) Kinetics of antimicrobial activity. J Pediatr 108(5 Pt 2):835-840. (Pubitemid 16063283)
    • (1986) Journal of Pediatrics , vol.108 , Issue.5 II , pp. 835-840
    • Vogelman, B.1    Craig, W.A.2
  • 33
    • 78149322604 scopus 로고    scopus 로고
    • Directed differentiation of human embryonic stem cells toward chondrocytes
    • Oldershaw RA, et al. (2010) Directed differentiation of human embryonic stem cells toward chondrocytes. Nat Biotechnol 28(11):1187-1194.
    • (2010) Nat Biotechnol , vol.28 , Issue.11 , pp. 1187-1194
    • Oldershaw, R.A.1
  • 35
    • 53349178722 scopus 로고    scopus 로고
    • In vivo reprogramming of adult pancreatic exocrine cells to beta-cells
    • Zhou Q, Brown J, Kanarek A, Rajagopal J, Melton DA (2008) In vivo reprogramming of adult pancreatic exocrine cells to beta-cells. Nature 455(7213):627-632.
    • (2008) Nature , vol.455 , Issue.7213 , pp. 627-632
    • Zhou, Q.1    Brown, J.2    Kanarek, A.3    Rajagopal, J.4    Melton, D.A.5
  • 36
    • 33747195353 scopus 로고    scopus 로고
    • Induction of Pluripotent Stem Cells from Mouse Embryonic and Adult Fibroblast Cultures by Defined Factors
    • DOI 10.1016/j.cell.2006.07.024, PII S0092867406009767
    • Takahashi K, Yamanaka S (2006) Induction of pluripotent stem cells from mouse embryonic and adult fibroblast cultures by defined factors. Cell 126(4):663-676. (Pubitemid 44233629)
    • (2006) Cell , vol.126 , Issue.4 , pp. 663-676
    • Takahashi, K.1    Yamanaka, S.2
  • 37
    • 84863651163 scopus 로고    scopus 로고
    • Combinatorial drug therapy for cancer in the post-genomic era
    • Al-Lazikani B, Banerji U, Workman P (2012) Combinatorial drug therapy for cancer in the post-genomic era. Nat Biotechnol 30(7):679-692.
    • (2012) Nat Biotechnol , vol.30 , Issue.7 , pp. 679-692
    • Al-Lazikani, B.1    Banerji, U.2    Workman, P.3
  • 39
    • 34548032087 scopus 로고    scopus 로고
    • Genome-wide association studies provide new insights into type 2 diabetes aetiology
    • Frayling TM (2007) Genome-wide association studies provide new insights into type 2 diabetes aetiology. Nat Rev Genet 8(9):657-662.
    • (2007) Nat Rev Genet , vol.8 , Issue.9 , pp. 657-662
    • Frayling, T.M.1
  • 40
    • 84856405512 scopus 로고    scopus 로고
    • The mystery of missing heritability: Genetic interactions create phantom heritability
    • Zuk O, Hechter E, Sunyaev SR, Lander ES (2012) The mystery of missing heritability: Genetic interactions create phantom heritability. Proc Natl Acad Sci USA 109(4):1193-1198.
    • (2012) Proc Natl Acad Sci USA , vol.109 , Issue.4 , pp. 1193-1198
    • Zuk, O.1    Hechter, E.2    Sunyaev, S.R.3    Lander, E.S.4
  • 41
    • 70349956433 scopus 로고    scopus 로고
    • Finding the missing heritability of complex diseases
    • Manolio TA, et al. (2009) Finding the missing heritability of complex diseases. Nature 461(7265):747-753.
    • (2009) Nature , vol.461 , Issue.7265 , pp. 747-753
    • Manolio, T.A.1
  • 42
    • 77952557918 scopus 로고    scopus 로고
    • Missing heritability and strategies for finding the underlying causes of complex disease
    • Eichler EE, et al. (2010) Missing heritability and strategies for finding the underlying causes of complex disease. Nat Rev Genet 11(6):446-450.
    • (2010) Nat Rev Genet , vol.11 , Issue.6 , pp. 446-450
    • Eichler, E.E.1
  • 43
    • 79952166228 scopus 로고    scopus 로고
    • Artificial gene amplification reveals an abundance of promiscuous resistance determinants in Escherichia coli
    • Soo VW, Hanson-Manful P, Patrick WM (2011) Artificial gene amplification reveals an abundance of promiscuous resistance determinants in Escherichia coli. Proc Natl Acad Sci USA 108(4):1484-1489.
    • (2011) Proc Natl Acad Sci USA , vol.108 , Issue.4 , pp. 1484-1489
    • Soo, V.W.1    Hanson-Manful, P.2    Patrick, W.M.3
  • 44
    • 50849098825 scopus 로고    scopus 로고
    • eSGA: E. coli synthetic genetic array analysis
    • Butland G, et al. (2008) eSGA: E. coli synthetic genetic array analysis. Nat Methods 5(9):789-795.
    • (2008) Nat Methods , vol.5 , Issue.9 , pp. 789-795
    • Butland, G.1
  • 46
    • 79957874673 scopus 로고    scopus 로고
    • Next-generation sequencing to generate interactome datasets
    • Yu H, et al. (2011) Next-generation sequencing to generate interactome datasets. Nat Methods 8(6):478-480.
    • (2011) Nat Methods , vol.8 , Issue.6 , pp. 478-480
    • Yu, H.1
  • 47
    • 33747794587 scopus 로고    scopus 로고
    • Genome-scale loss-of-function screening with a lentiviral RNAi library
    • DOI 10.1038/nmeth924, PII NMETH924
    • Root DE, Hacohen N, Hahn WC, Lander ES, Sabatini DM (2006) Genome-scale loss-offunction screening with a lentiviral RNAi library. Nat Methods 3(9):715-719. (Pubitemid 44275739)
    • (2006) Nature Methods , vol.3 , Issue.9 , pp. 715-719
    • Root, D.E.1    Hacohen, N.2    Hahn, W.C.3    Lander, E.S.4    Sabatini, D.M.5
  • 48
    • 33747754760 scopus 로고    scopus 로고
    • Lessons from Nature: microRNA-based shRNA libraries
    • DOI 10.1038/nmeth923, PII NMETH923
    • Chang K, Elledge SJ, Hannon GJ (2006) Lessons from Nature: MicroRNA-based shRNA libraries. Nat Methods 3(9):707-714. (Pubitemid 44275738)
    • (2006) Nature Methods , vol.3 , Issue.9 , pp. 707-714
    • Chang, K.1    Elledge, S.J.2    Hannon, G.J.3
  • 49
    • 53349117774 scopus 로고    scopus 로고
    • High-quality binary protein interaction map of the yeast interactome network
    • Yu H, et al. (2008) High-quality binary protein interaction map of the yeast interactome network. Science 322(5898):104-110.
    • (2008) Science , vol.322 , Issue.5898 , pp. 104-110
    • Yu, H.1
  • 50
    • 79955592811 scopus 로고    scopus 로고
    • Harnessing synthetic lethal interactions in anticancer drug discovery
    • Chan DA, Giaccia AJ (2011) Harnessing synthetic lethal interactions in anticancer drug discovery. Nat Rev Drug Discov 10(5):351-364.
    • (2011) Nat Rev Drug Discov , vol.10 , Issue.5 , pp. 351-364
    • Chan, D.A.1    Giaccia, A.J.2
  • 51
    • 84862002321 scopus 로고    scopus 로고
    • Inferring gene regulatory logic from high-throughput measurements of thousands of systematically designed promoters
    • Sharon E, et al. (2012) Inferring gene regulatory logic from high-throughput measurements of thousands of systematically designed promoters. Nat Biotechnol 30(6):521-530.
    • (2012) Nat Biotechnol , vol.30 , Issue.6 , pp. 521-530
    • Sharon, E.1
  • 52
    • 84872001455 scopus 로고    scopus 로고
    • Pharmaceutically controlled designer circuit for the treatment of the metabolic syndrome
    • Ye H, et al. (2013) Pharmaceutically controlled designer circuit for the treatment of the metabolic syndrome. Proc Natl Acad Sci USA 110(1):141-146.
    • (2013) Proc Natl Acad Sci USA , vol.110 , Issue.1 , pp. 141-146
    • Ye, H.1
  • 53
    • 33845735891 scopus 로고    scopus 로고
    • Synthetic RNA circuits
    • DOI 10.1038/nchembio846, PII NCHEMBIO846
    • Davidson EA, Ellington AD (2007) Synthetic RNA circuits. Nat Chem Biol 3(1):23-28. (Pubitemid 46005694)
    • (2007) Nature Chemical Biology , vol.3 , Issue.1 , pp. 23-28
    • Davidson, E.A.1    Ellington, A.D.2
  • 54
    • 84879520478 scopus 로고    scopus 로고
    • Engineering of regulated stochastic cell fate determination
    • Wu M, et al. (2013) Engineering of regulated stochastic cell fate determination. Proc Natl Acad Sci USA 110(26):10610-10615.
    • (2013) Proc Natl Acad Sci USA , vol.110 , Issue.26 , pp. 10610-10615
    • Wu, M.1
  • 55
    • 34447505900 scopus 로고    scopus 로고
    • A Tunable Genetic Switch Based on RNAi and Repressor Proteins for Regulating Gene Expression in Mammalian Cells
    • DOI 10.1016/j.cell.2007.05.045, PII S0092867407006848
    • Deans TL, Cantor CR, Collins JJ (2007) A tunable genetic switch based on RNAi and repressor proteins for regulating gene expression in mammalian cells. Cell 130(2):363-372. (Pubitemid 47081136)
    • (2007) Cell , vol.130 , Issue.2 , pp. 363-372
    • Deans, T.L.1    Cantor, C.R.2    Collins, J.J.3
  • 56
    • 67349270900 scopus 로고    scopus 로고
    • Enzymatic assembly of DNA molecules up to several hundred kilobases
    • Gibson DG, et al. (2009) Enzymatic assembly of DNA molecules up to several hundred kilobases. Nat Methods 6(5):343-345.
    • (2009) Nat Methods , vol.6 , Issue.5 , pp. 343-345
    • Gibson, D.G.1
  • 57
    • 0033676098 scopus 로고    scopus 로고
    • DNA cloning using in vitro site-specific recombination
    • Hartley JL, Temple GF, Brasch MA (2000) DNA cloning using in vitro site-specific recombination. Genome Res 10(11):1788-1795.
    • (2000) Genome Res , vol.10 , Issue.11 , pp. 1788-1795
    • Hartley, J.L.1    Temple, G.F.2    Brasch, M.A.3


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