-
1
-
-
0034708480
-
The genome sequence of Drosophila melanogaster
-
DOI 10.1126/science.287.5461.2185
-
Adams MD, Celniker SE, Holt RA, Evans CA, Gocayne JD, Amanatides PG, Scherer SE, Li PW, Hoskins RA, Galle RF, et al. 2000. The genome sequence of Drosophila melanogaster. Science 287: 2185-2195. (Pubitemid 30177013)
-
(2000)
Science
, vol.287
, Issue.5461
, pp. 2185-2195
-
-
Adams, M.D.1
Celniker, S.E.2
Holt, R.A.3
Evans, C.A.4
Gocayne, J.D.5
Amanatides, P.G.6
Scherer, S.E.7
Li, P.W.8
Hoskins, R.A.9
Galle, R.F.10
George, R.A.11
Lewis, S.E.12
Richards, S.13
Ashburner, M.14
Henderson, S.N.15
Sutton, G.G.16
Wortman, J.R.17
Yandell, M.D.18
Zhang, Q.19
Chen, L.X.20
Brandon, R.C.21
Rogers, Y.C.22
Blazej, R.G.23
Champe, M.24
Pfeiffer, B.D.25
Wan, K.H.26
Doyle, C.27
Baxter, E.G.28
Helt, G.29
Nelson, C.R.30
Gabor, M.G.L.31
Abril, J.F.32
Agbayani, A.33
An, H.-J.34
Andrews-Pfannkoch, C.35
Baldwin, D.36
Ballew, R.M.37
Basu, A.38
Baxendale, J.39
Bayraktaroglu, L.40
Beasley, E.M.41
Beeson, K.Y.42
Benos, P.V.43
Berman, B.P.44
Bhandari, D.45
Bolshakov, S.46
Borkova, D.47
Botchan, M.R.48
Bouck, J.49
Brokstein, P.50
Brottier, P.51
Burtis, K.C.52
Busam, D.A.53
Butler, H.54
Cadieu, E.55
Center, A.56
Chandra, I.57
Cherry, J.M.58
Cawley, S.59
Dahlke, C.60
Davenport, L.B.61
Davies, P.62
De Pablos, B.63
Delcher, A.64
Deng, Z.65
Mays, A.D.66
Dew, I.67
Dietz, S.M.68
Dodson, K.69
Doup, L.E.70
Downes, M.71
Dugan-Rocha, S.72
Dunkov, B.C.73
Dunn, P.74
Durbin, K.J.75
Evangelista, C.C.76
Ferraz, C.77
Ferriera, S.78
Fleischmann, W.79
Fosler, C.80
Gabrielian, A.E.81
Garg, N.S.82
Gelbart, W.M.83
Glasser, K.84
Glodek, A.85
Gong, F.86
Gorrell, J.H.87
Gu, Z.88
Guan, P.89
Harris, M.90
Harris, N.L.91
Harvey, D.92
Heiman, T.J.93
Hernandez, J.R.94
Houck, J.95
Hostin, D.96
Houston, K.A.97
Howland, T.J.98
Wei, M.-H.99
more..
-
2
-
-
0028690043
-
Immunological methods for mapping protein distributions on polytene chromosomes
-
Andrew DJ, Scott MP. 1994. Immunological methods for mapping protein distributions on polytene chromosomes. Methods Cell Biol 44: 353-370.
-
(1994)
Methods Cell Biol
, vol.44
, pp. 353-370
-
-
Andrew, D.J.1
Scott, M.P.2
-
3
-
-
80053087455
-
How do they do Wnt they do?: Regulation of transcription by the Wnt/ b-catenin pathway
-
Archbold HC, Yang YX, Chen L, Cadigan KM. 2012. How do they do Wnt they do?: regulation of transcription by the Wnt/ b-catenin pathway. Acta Physiol 204: 74-109.
-
(2012)
Acta Physiol
, vol.204
, pp. 74-109
-
-
Archbold, H.C.1
Yang, Y.X.2
Chen, L.3
Cadigan, K.M.4
-
4
-
-
84874381107
-
Genomewide quantitative enhancer activity maps identified by STARR-seq
-
Arnold CD, Gerlach D, Stelzer C, Boryn LM, Rath M, Stark A. 2013. Genomewide quantitative enhancer activity maps identified by STARR-seq. Science 339: 1074-1077.
-
(2013)
Science
, vol.339
, pp. 1074-1077
-
-
Arnold, C.D.1
Gerlach, D.2
Stelzer, C.3
Boryn, L.M.4
Rath, M.5
Stark, A.6
-
5
-
-
17644397256
-
Transcriptional enhancers: Intelligent enhanceosomes or flexible billboards?
-
DOI 10.1002/jcb.20352
-
Arnosti DN, Kulkarni MM. 2005. Transcriptional enhancers: intelligent enhanceosomes or flexible billboards? J Cell Biochem 94: 890-898. (Pubitemid 41420252)
-
(2005)
Journal of Cellular Biochemistry
, vol.94
, Issue.5
, pp. 890-898
-
-
Arnosti, D.N.1
Kulkarni, M.M.2
-
6
-
-
0014198472
-
Gene activity dependent on chromosome synapsis in the polytene chromosomes of Drosophila melanogaster
-
Ashburner M. 1967. Gene activity dependent on chromosome synapsis in the polytene chromosomes of Drosophila melanogaster. Nature 214: 1159-1160.
-
(1967)
Nature
, vol.214
, pp. 1159-1160
-
-
Ashburner, M.1
-
7
-
-
0014886468
-
The genetic analysis of puffing in polytene chromosomes of Drosophila
-
Ashburner M. 1970. The genetic analysis of puffing in polytene chromosomes of Drosophila. Proc Royal Soc London B Biol Sci 176: 319-327.
-
(1970)
Proc Royal Soc London B Biol Sci
, vol.176
, pp. 319-327
-
-
Ashburner, M.1
-
8
-
-
80054728495
-
Animal transcription networks as highly connected, quantitative continua
-
Biggin MD. 2011. Animal transcription networks as highly connected, quantitative continua. Dev Cell 21: 611-626.
-
(2011)
Dev Cell
, vol.21
, pp. 611-626
-
-
Biggin, M.D.1
-
9
-
-
73649114935
-
Dissecting the regulatory switches of development: Lessons from enhancer evolution in Drosophila
-
Borok MJ, Tran DA, Ho MC, Drewell RA. 2010. Dissecting the regulatory switches of development: lessons from enhancer evolution in Drosophila. Development 137: 5-13.
-
(2010)
Development
, vol.137
, pp. 5-13
-
-
Borok, M.J.1
Tran, D.A.2
Ho, M.C.3
Drewell, R.A.4
-
10
-
-
0032497513
-
Drosophila Tcf and Groucho interact to repress wingless signalling activity
-
DOI 10.1038/26982
-
Cavallo RA, Cox RT, Moline MM, Roose J, Polevoy GA, Clevers H, Peifer M, Bejsovec A. 1998. Drosophila Tcf and Groucho interact to repress Wingless signalling activity. Nature 395: 604-608. (Pubitemid 28475714)
-
(1998)
Nature
, vol.395
, Issue.6702
, pp. 604-608
-
-
Cavallo, R.A.1
Cox, R.T.2
Moline, M.M.3
Roose, J.4
Polevoy, G.A.5
Clevers, H.6
Reifer, M.7
Bejsovec, A.8
-
11
-
-
57649107878
-
Activation of wingless targets requires bipartite recognition of DNA by TCF
-
Chang MV, Chang JL, Gangopadhyay A, Shearer A, Cadigan KM. 2008. Activation of wingless targets requires bipartite recognition of DNA by TCF. Curr Biol 18: 1877-1881.
-
(2008)
Curr Biol
, vol.18
, pp. 1877-1881
-
-
Chang, M.V.1
Chang, J.L.2
Gangopadhyay, A.3
Shearer, A.4
Cadigan, K.M.5
-
12
-
-
70549096299
-
Conservation and divergence in developmental networks: A view from Drosophila myogenesis
-
Ciglar L, Furlong EE. 2009. Conservation and divergence in developmental networks: a view from Drosophila myogenesis. Curr Opin Cell Biol 21: 754-760.
-
(2009)
Curr Opin Cell Biol
, vol.21
, pp. 754-760
-
-
Ciglar, L.1
Furlong, E.E.2
-
13
-
-
70349545897
-
A tumor suppressor activity of Drosophila Polycomb genes mediated by JAK-STAT signaling
-
Classen AK, Bunker BD, Harvey KF, Vaccari T, Bilder D. 2009. A tumor suppressor activity of Drosophila Polycomb genes mediated by JAK-STAT signaling. Nat Genet 41: 1150-1155.
-
(2009)
Nat Genet
, vol.41
, pp. 1150-1155
-
-
Classen, A.K.1
Bunker, B.D.2
Harvey, K.F.3
Vaccari, T.4
Bilder, D.5
-
14
-
-
77952996319
-
Genome-wide kinetics of nucleosome turnover determined by metabolic labeling of histones
-
Deal RB, Henikoff JG, Henikoff S. 2010. Genome-wide kinetics of nucleosome turnover determined by metabolic labeling of histones. Science 328: 1161-1164.
-
(2010)
Science
, vol.328
, pp. 1161-1164
-
-
Deal, R.B.1
Henikoff, J.G.2
Henikoff, S.3
-
15
-
-
84861976397
-
Polycomb: A paradigm for genome organization from one to three dimensions
-
Delest A, Sexton T, Cavalli G. 2012. Polycomb: a paradigm for genome organization from one to three dimensions. Curr Opin Cell Biol 24: 405-414.
-
(2012)
Curr Opin Cell Biol
, vol.24
, pp. 405-414
-
-
Delest, A.1
Sexton, T.2
Cavalli, G.3
-
17
-
-
84856425002
-
Sparkling insights into enhancer structure, function, and evolution
-
Evans NC, Swanson CI, Barolo S. 2012. Sparkling insights into enhancer structure, function, and evolution. Curr Top Dev Biol 98: 97-120.
-
(2012)
Curr Top Dev Biol
, vol.98
, pp. 97-120
-
-
Evans, N.C.1
Swanson, C.I.2
Barolo, S.3
-
18
-
-
33745542960
-
C-terminal-binding protein directly activates and represses Wnt transcriptional targets in Drosophila
-
DOI 10.1038/sj.emboj.7601153, PII 7601153
-
Fang M, Li J, Blauwkamp T, Bhambhani C, Campbell N, Cadigan KM. 2006. C-terminal-binding protein directly activates and represses Wnt transcriptional targets in Drosophila. EMBO J 25: 2735-2745. (Pubitemid 43980381)
-
(2006)
EMBO Journal
, vol.25
, Issue.12
, pp. 2735-2745
-
-
Fang, M.1
Li, J.2
Blauwkamp, T.3
Bhambhani, C.4
Campbell, N.5
Cadigan, K.M.6
-
19
-
-
80053985777
-
Cohesin selectively binds and regulates genes with paused RNA polymerase
-
Fay A, Misulovin Z, Li J, Schaaf CA, Gause M, Gilmour DS, Dorsett D. 2011. Cohesin selectively binds and regulates genes with paused RNA polymerase. Curr Biol 21: 1624-1634.
-
(2011)
Curr Biol
, vol.21
, pp. 1624-1634
-
-
Fay, A.1
Misulovin, Z.2
Li, J.3
Schaaf, C.A.4
Gause, M.5
Gilmour, D.S.6
Dorsett, D.7
-
20
-
-
77957776228
-
Systematic protein location mapping reveals five principal chromatin types in Drosophila cells
-
Filion GJ, van Bemmel JG, Braunschweig U, Talhout W, Kind J, Ward LD, Brugman W, de Castro IJ, Kerkhoven RM, Bussemaker HJ, et al. 2010. Systematic protein location mapping reveals five principal chromatin types in Drosophila cells. Cell 143: 212-224.
-
(2010)
Cell
, vol.143
, pp. 212-224
-
-
Filion, G.J.1
Van Bemmel, J.G.2
Braunschweig, U.3
Talhout, W.4
Kind, J.5
Ward, L.D.6
Brugman, W.7
De Castro, I.J.8
Kerkhoven, R.M.9
Bussemaker, H.J.10
-
21
-
-
0016651630
-
Genetic control of wing disc development in Drosophila
-
0
-
Garcia-Bellido A. 1975. Genetic control of wing disc development in Drosophila. Ciba Found Symp 0: 161-182.
-
(1975)
Ciba Found Symp
, pp. 161-182
-
-
Garcia-Bellido, A.1
-
22
-
-
6044243723
-
Direct integration of Hox and segmentation gene inputs during Drosophila development
-
DOI 10.1038/nature02946
-
Gebelein B, McKay DJ, Mann RS. 2004. Direct integration of Hox and segmentation gene inputs during Drosophila development. Nature 431: 653-659. (Pubitemid 39382605)
-
(2004)
Nature
, vol.431
, Issue.7009
, pp. 653-659
-
-
Gebelein, B.1
McKay, D.J.2
Mann, R.S.3
-
23
-
-
78149477660
-
Pausing of RNA polymerase II disrupts DNA-specified nucleosome organization to enable precise gene regulation
-
Gilchrist DA, Dos Santos G, Fargo DC, Xie B, Gao Y, Li L, Adelman K. 2010. Pausing of RNA polymerase II disrupts DNA-specified nucleosome organization to enable precise gene regulation. Cell 143: 540-551.
-
(2010)
Cell
, vol.143
, pp. 540-551
-
-
Gilchrist, D.A.1
Dos Santos, G.2
Fargo, D.C.3
Xie, B.4
Gao, Y.5
Li, L.6
Adelman, K.7
-
24
-
-
79953300078
-
FIMO: Scanning for occurrences of a given motif
-
Grant CE, Bailey TL, Noble WS. 2011. FIMO: scanning for occurrences of a given motif. Bioinformatics 27: 1017-1018.
-
(2011)
Bioinformatics
, vol.27
, pp. 1017-1018
-
-
Grant, C.E.1
Bailey, T.L.2
Noble, W.S.3
-
25
-
-
78049440475
-
Chromatin landscape dictates HSF binding to target DNA elements
-
Guertin MJ, Lis JT. 2010. Chromatin landscape dictates HSF binding to target DNA elements. PLoS Genet 6 e1001114.
-
(2010)
PLoS Genet
, vol.6
-
-
Guertin, M.J.1
Lis, J.T.2
-
26
-
-
27644478284
-
The distribution of SNPs in human gene regulatory regions
-
Guo Y, Jamison DC. 2005. The distribution of SNPs in human gene regulatory regions. BMC Genomics 6: 140.
-
(2005)
BMC Genomics
, vol.6
, pp. 140
-
-
Guo, Y.1
Jamison, D.C.2
-
27
-
-
37049183378
-
Cross-regulatory interactions among pair-rule genes in Drosophila
-
Harding K, Rushlow C, Doyle HJ, Hoey T, Levine M. 1986. Cross-regulatory interactions among pair-rule genes in Drosophila. Science 233: 953-959. (Pubitemid 16011908)
-
(1986)
Science
, vol.233
, Issue.4767
, pp. 953-959
-
-
Harding, K.1
Rushlow, C.2
Doyle, H.J.3
-
28
-
-
45549093494
-
Promoter elements associated with RNA Pol II stalling in the Drosophila embryo
-
DOI 10.1073/pnas.0802406105
-
Hendrix DA, Hong JW, Zeitlinger J, Rokhsar DS, Levine MS. 2008. Promoter elements associated with RNA Pol II stalling in the Drosophila embryo. Proc Natl Acad Sci 105: 7762-7767. (Pubitemid 351872712)
-
(2008)
Proceedings of the National Academy of Sciences of the United States of America
, vol.105
, Issue.22
, pp. 7762-7767
-
-
Hendrix, D.A.1
Hong, J.-W.2
Zeitlinger, J.3
Rokhsar, D.S.4
Levine, M.S.5
-
29
-
-
0017706588
-
Correlation of RNA polymerase B and transcriptional activity in the chromosomes of Drosophila melanogaster
-
Jamrich M, Haars R, Wulf E, Bautz FA. 1977. Correlation of RNA polymerase B and transcriptional activity in the chromosomes of Drosophila melanogaster. Chromosoma 64: 319-326. (Pubitemid 8233506)
-
(1977)
Chromosoma
, vol.64
, Issue.4
, pp. 319-326
-
-
Jamrich, M.1
Haars, R.2
Wulf, E.3
Bautz, F.A.4
-
30
-
-
79953060951
-
Comprehensive analysis of the chromatin landscape in Drosophila melanogaster
-
Kharchenko PV, Alekseyenko AA, Schwartz YB, Minoda A, Riddle NC, Ernst J, Sabo PJ, Larschan E, Gorchakov AA, Gu T, et al. 2011. Comprehensive analysis of the chromatin landscape in Drosophila melanogaster. Nature 471: 480-485.
-
(2011)
Nature
, vol.471
, pp. 480-485
-
-
Kharchenko, P.V.1
Alekseyenko, A.A.2
Schwartz, Y.B.3
Minoda, A.4
Riddle, N.C.5
Ernst, J.6
Sabo, P.J.7
Larschan, E.8
Gorchakov, A.A.9
Gu, T.10
-
31
-
-
0032996571
-
The Vestigial gene product provides a molecular context for the interpretation of signals during the development of the wing in Drosophila
-
Klein T, Arias AM. 1999. The vestigial gene product provides a molecular context for the interpretation of signals during the development of the wing in Drosophila. Development 126: 913-925. (Pubitemid 29142000)
-
(1999)
Development
, vol.126
, Issue.5
, pp. 913-925
-
-
Klein, T.1
Arias, A.M.2
-
32
-
-
84860503075
-
HOT regions function as patterned developmental enhancers and have a distinct cis-regulatory signature
-
Kvon EZ, Stampfel G, Yanez-Cuna JO, Dickson BJ, Stark A. 2012. HOT regions function as patterned developmental enhancers and have a distinct cis-regulatory signature. Genes Dev 26: 908-913.
-
(2012)
Genes Dev
, vol.26
, pp. 908-913
-
-
Kvon, E.Z.1
Stampfel, G.2
Yanez-Cuna, J.O.3
Dickson, B.J.4
Stark, A.5
-
33
-
-
52949106124
-
Stability and dynamics of polycomb target sites in Drosophila development
-
Kwong C, Adryan B, Bell I, Meadows L, Russell S, Manak JR, White R. 2008. Stability and dynamics of polycomb target sites in Drosophila development. PLoS Genet 4: e1000178.
-
(2008)
PLoS Genet
, vol.4
-
-
Kwong, C.1
Adryan, B.2
Bell, I.3
Meadows, L.4
Russell, S.5
Manak, J.R.6
White, R.7
-
34
-
-
43249086572
-
NELF and GAGA factor are linked to promoter-proximal pausing at many genes in Drosophila
-
DOI 10.1128/MCB.02224-07
-
Lee C, Li X, Hechmer A, Eisen M, Biggin MD, Venters BJ, Jiang C, Li J, Pugh BF, Gilmour DS. 2008. NELF and GAGA factor are linked to promoter-proximal pausing at many genes in Drosophila. Mol Cell Biol 28: 3290-3300. (Pubitemid 351657093)
-
(2008)
Molecular and Cellular Biology
, vol.28
, Issue.10
, pp. 3290-3300
-
-
Lee, C.1
Li, X.2
Hechmer, A.3
Eisen, M.4
Biggin, M.D.5
Venters, B.J.6
Jiang, C.7
Li, J.8
Pugh, B.F.9
Gilmour, D.S.10
-
35
-
-
84870222914
-
Disentangling the many layers of eukaryotic transcriptional regulation
-
Lelli KM, Slattery M, Mann RS. 2012. Disentangling the many layers of eukaryotic transcriptional regulation. Annu Rev Genet 46: 43-68.
-
(2012)
Annu Rev Genet
, vol.46
, pp. 43-68
-
-
Lelli, K.M.1
Slattery, M.2
Mann, R.S.3
-
36
-
-
17044368752
-
Gene regulatory networks for development
-
Levine M, Davidson EH. 2005. Gene regulatory networks for development. Proc Natl Acad Sci 102: 4936-4942.
-
(2005)
Proc Natl Acad Sci
, vol.102
, pp. 4936-4942
-
-
Levine, M.1
Davidson, E.H.2
-
37
-
-
84880212130
-
Distinct mechanisms of transcriptional pausing orchestrated by GAGA factor and M1BP, a novel transcription factor
-
Li J, Gilmour DS. 2013. Distinct mechanisms of transcriptional pausing orchestrated by GAGA factor and M1BP, a novel transcription factor. EMBO J 32: 1829-1841.
-
(2013)
EMBO J
, vol.32
, pp. 1829-1841
-
-
Li, J.1
Gilmour, D.S.2
-
38
-
-
40149095913
-
Transcription factors bind thousands of active and inactive regions in the Drosophila blastoderm
-
Li XY, MacArthur S, Bourgon R, Nix D, Pollard DA, Iyer VN, Hechmer A, Simirenko L, Stapleton M, Luengo Hendriks CL, et al. 2008. Transcription factors bind thousands of active and inactive regions in the Drosophila blastoderm. PLoS Biol 6: e27.
-
(2008)
PLoS Biol
, vol.6
-
-
Li, X.Y.1
MacArthur, S.2
Bourgon, R.3
Nix, D.4
Pollard, D.A.5
Iyer, V.N.6
Hechmer, A.7
Simirenko, L.8
Stapleton, M.9
Luengo Hendriks, C.L.10
-
39
-
-
79955564639
-
Measuring reproducibility of high-throughput experiments
-
Li Q, Brown JB, Huang H, Bickel PJ. 2011a. Measuring reproducibility of high-throughput experiments. Ann Appl Stat 5: 1752-1779.
-
(2011)
Ann Appl Stat
, vol.5
, pp. 1752-1779
-
-
Li, Q.1
Brown, J.B.2
Huang, H.3
Bickel, P.J.4
-
40
-
-
79953709415
-
The role of chromatin accessibility in directing the widespread, overlapping patterns of Drosophila transcription factor binding
-
Li XY, Thomas S, Sabo PJ, Eisen MB, Stamatoyannopoulos JA, Biggin MD. 2011b. The role of chromatin accessibility in directing the widespread, overlapping patterns of Drosophila transcription factor binding. Genome Biol 12: R34.
-
(2011)
Genome Biol
, vol.12
-
-
Li, X.Y.1
Thomas, S.2
Sabo, P.J.3
Eisen, M.B.4
Stamatoyannopoulos, J.A.5
Biggin, M.D.6
-
41
-
-
84878860082
-
Kinetic competition between elongation rate and binding of NELF controls promoter-proximal pausing
-
Li J, Liu Y, Rhee HS, Ghosh SK, Bai L, Pugh BF, Gilmour DS. 2013. Kinetic competition between elongation rate and binding of NELF controls promoter-proximal pausing. Mol Cell 50: 711-722.
-
(2013)
Mol Cell
, vol.50
, pp. 711-722
-
-
Li, J.1
Liu, Y.2
Rhee, H.S.3
Ghosh, S.K.4
Bai, L.5
Pugh, B.F.6
Gilmour, D.S.7
-
42
-
-
68849103482
-
Developmental roles of 21 Drosophila transcription factors are determined by quantitative differences in binding to an overlapping set of thousands of genomic regions
-
MacArthur S, Li XY, Li J, Brown JB, Chu HC, Zeng L, Grondona BP, Hechmer A, Simirenko L, Keranen SV, et al. 2009. Developmental roles of 21 Drosophila transcription factors are determined by quantitative differences in binding to an overlapping set of thousands of genomic regions. Genome Biol 10: R80.
-
(2009)
Genome Biol
, vol.10
-
-
MacArthur, S.1
Li, X.Y.2
Li, J.3
Brown, J.B.4
Chu, H.C.5
Zeng, L.6
Grondona, B.P.7
Hechmer, A.8
Simirenko, L.9
Keranen, S.V.10
-
44
-
-
0034518324
-
The developmental and molecular biology of genes that subdivide the body of Drosophila
-
DOI 10.1146/annurev.cellbio.16.1.243
-
Mann RS, Morata G. 2000. The developmental and molecular biology of genes that subdivide the body of Drosophila. Annu Rev Cell Dev Biol 16: 243-271. (Pubitemid 32037507)
-
(2000)
Annual Review of Cell and Developmental Biology
, vol.16
, pp. 243-271
-
-
Mann, R.S.1
Morata, G.2
-
45
-
-
67749095703
-
Hox specificity unique roles for cofactors and collaborators
-
Mann RS, Lelli KM, Joshi R. 2009. Hox specificity unique roles for cofactors and collaborators. Curr Top Dev Biol 88: 63-101.
-
(2009)
Curr Top Dev Biol
, vol.88
, pp. 63-101
-
-
Mann, R.S.1
Lelli, K.M.2
Joshi, R.3
-
46
-
-
33747072322
-
Hotspots of transcription factor colocalization in the genome of Drosophila melanogaster
-
DOI 10.1073/pnas.0605003103
-
Moorman C, Sun LV, Wang J, de Wit E, Talhout W, Ward LD, Greil F, Lu XJ, White KP, Bussemaker HJ, et al. 2006. Hotspots of transcription factor colocalization in the genome of Drosophila melanogaster. Proc Natl Acad Sci 103: 12027-12032. (Pubitemid 44215805)
-
(2006)
Proceedings of the National Academy of Sciences of the United States of America
, vol.103
, Issue.32
, pp. 12027-12032
-
-
Moorman, C.1
Sun, L.V.2
Wang, J.3
De Wit, E.4
Talhout, W.5
Ward, L.D.6
Greil, F.7
Lu, X.-J.8
White, K.P.9
Bussemaker, H.J.10
Van Steensel, B.11
-
47
-
-
33646856965
-
Chromosomal distribution of PcG proteins during Drosophila development
-
Nègre N, Hennetin J, Sun LV, Lavrov S, Bellis M, White KP, Cavalli G. 2006. Chromosomal distribution of PcG proteins during Drosophila development. PLoS Biol 4: e170.
-
(2006)
PLoS Biol
, vol.4
-
-
Nègre, N.1
Hennetin, J.2
Sun, L.V.3
Lavrov, S.4
Bellis, M.5
White, K.P.6
Cavalli, G.7
-
48
-
-
76749089660
-
A comprehensive map of insulator elements for the Drosophila genome
-
Nègre N, Brown CD, Shah PK, Kheradpour P, Morrison CA, Henikoff JG, Feng X, Ahmad K, Russell S, White RA, et al. 2010. A comprehensive map of insulator elements for the Drosophila genome. PLoS Genet 6: e1000814.
-
(2010)
PLoS Genet
, vol.6
-
-
Nègre, N.1
Brown, C.D.2
Shah, P.K.3
Kheradpour, P.4
Morrison, C.A.5
Henikoff, J.G.6
Feng, X.7
Ahmad, K.8
Russell, S.9
White, R.A.10
-
49
-
-
79953046943
-
A cis-regulatory map of the Drosophila genome
-
Nègre N, Brown CD, Ma L, Bristow CA, Miller SW, Wagner U, Kheradpour P, Eaton ML, Loriaux P, Sealfon R, et al. 2011. A cis-regulatory map of the Drosophila genome. Nature 471: 527-531.
-
(2011)
Nature
, vol.471
, pp. 527-531
-
-
Nègre, N.1
Brown, C.D.2
Ma, L.3
Bristow, C.A.4
Miller, S.W.5
Wagner, U.6
Kheradpour, P.7
Eaton, M.L.8
Loriaux, P.9
Sealfon, R.10
-
50
-
-
79551614016
-
Diverse transcription factor binding features revealed by genome-wide ChIP-seq in C. Elegans
-
Niu W, Lu ZJ, Zhong M, Sarov M, Murray JI, Brdlik CM, Janette J, Chen C, Alves P, Preston E, et al. 2011. Diverse transcription factor binding features revealed by genome-wide ChIP-seq in C. elegans. Genome Res 21: 245-254.
-
(2011)
Genome Res
, vol.21
, pp. 245-254
-
-
Niu, W.1
Lu, Z.J.2
Zhong, M.3
Sarov, M.4
Murray, J.I.5
Brdlik, C.M.6
Janette, J.7
Chen, C.8
Alves, P.9
Preston, E.10
-
51
-
-
84874275439
-
Genome-wide association of yorkie with chromatin and chromatin-remodeling complexes
-
Oh H, Slattery M, Ma L, Crofts A, White KP, Mann RS, Irvine KD. 2013. Genome-wide association of yorkie with chromatin and chromatin-remodeling complexes. Cell Reports 3: 309-318.
-
(2013)
Cell Reports
, vol.3
, pp. 309-318
-
-
Oh, H.1
Slattery, M.2
Ma, L.3
Crofts, A.4
White, K.P.5
Mann, R.S.6
Irvine, K.D.7
-
52
-
-
84860443136
-
Enhancers: Emerging roles in cell fate specification
-
Ong CT, Corces VG. 2012. Enhancers: emerging roles in cell fate specification. EMBO Rep 13: 423-430.
-
(2012)
EMBO Rep
, vol.13
, pp. 423-430
-
-
Ong, C.T.1
Corces, V.G.2
-
53
-
-
46149108345
-
Rapid, Transcription-Independent Loss of Nucleosomes over a Large Chromatin Domain at Hsp70 Loci
-
DOI 10.1016/j.cell.2008.05.029, PII S0092867408006892
-
Petesch SJ, Lis JT. 2008. Rapid, transcription-independent loss of nucleosomes over a large chromatin domain at Hsp70 loci. Cell 134: 74-84. (Pubitemid 351905736)
-
(2008)
Cell
, vol.134
, Issue.1
, pp. 74-84
-
-
Petesch, S.J.1
Lis, J.T.2
-
54
-
-
0004915153
-
Experimental activation of specific loci in polytene chromosomes of Drosophila
-
Ritossa FM. 1964. Experimental activation of specific loci in polytene chromosomes of Drosophila. Exp Cell Res 35: 601-607.
-
(1964)
Exp Cell Res
, vol.35
, pp. 601-607
-
-
Ritossa, F.M.1
-
55
-
-
78650331647
-
Identification of functional elements and regulatory circuits by Drosophila modENCODE
-
Roy S, Ernst J, Kharchenko PV, Kheradpour P, Nègre N, Eaton ML, Landolin JM, Bristow CA, Ma L, Lin MF, et al. 2010. Identification of functional elements and regulatory circuits by Drosophila modENCODE. Science 330: 1787-1797.
-
(2010)
Science
, vol.330
, pp. 1787-1797
-
-
Roy, S.1
Ernst, J.2
Kharchenko, P.V.3
Kheradpour, P.4
Nègre, N.5
Eaton, M.L.6
Landolin, J.M.7
Bristow, C.A.8
Ma, L.9
Lin, M.F.10
-
58
-
-
77953724115
-
Odd paired transcriptional activation of decapentaplegic in the Drosophila eye/antennal disc is cell autonomous but indirect
-
Sen A, Stultz BG, Lee H, Hursh DA. 2010. Odd paired transcriptional activation of decapentaplegic in the Drosophila eye/antennal disc is cell autonomous but indirect. Dev Biol 343: 167-177.
-
(2010)
Dev Biol
, vol.343
, pp. 167-177
-
-
Sen, A.1
Stultz, B.G.2
Lee, H.3
Hursh, D.A.4
-
59
-
-
84856747483
-
Three-dimensional folding and functional organization principles of the Drosophila genome
-
Sexton T, Yaffe E, Kenigsberg E, Bantignies F, Leblanc B, Hoichman M, Parrinello H, Tanay A, Cavalli G. 2012. Three-dimensional folding and functional organization principles of the Drosophila genome. Cell 148: 458-472.
-
(2012)
Cell
, vol.148
, pp. 458-472
-
-
Sexton, T.1
Yaffe, E.2
Kenigsberg, E.3
Bantignies, F.4
Leblanc, B.5
Hoichman, M.6
Parrinello, H.7
Tanay, A.8
Cavalli, G.9
-
60
-
-
0037663448
-
Drosophila FACT contributes to Hox gene expression through physical and functional interactions with GAGA factor
-
DOI 10.1101/gad.1086803
-
Shimojima T, Okada M, Nakayama T, Ueda H, Okawa K, Iwamatsu A, Handa H, Hirose S. 2003. Drosophila FACT contributes to Hox gene expression through physical and functional interactions with GAGA factor. Genes Dev 17: 1605-1616. (Pubitemid 36828788)
-
(2003)
Genes and Development
, vol.17
, Issue.13
, pp. 1605-1616
-
-
Shimojima, T.1
Okada, M.2
Nakayama, T.3
Ueda, H.4
Okawa, K.5
Iwamatsu, A.6
Handa, H.7
Hirose, S.8
-
61
-
-
0842280397
-
A method for determination of the in situ distribution of chromosomal proteins
-
Silver LM, Elgin SC. 1976. A method for determination of the in situ distribution of chromosomal proteins. Proc Natl Acad Sci 73: 423-427.
-
(1976)
Proc Natl Acad Sci
, vol.73
, pp. 423-427
-
-
Silver, L.M.1
Elgin, S.C.2
-
62
-
-
70349469565
-
Mechanisms of polycomb gene silencing: Knowns and unknowns
-
Simon JA, Kingston RE. 2009. Mechanisms of polycomb gene silencing: knowns and unknowns. Nat Rev Mol Cell Biol 10: 697-708.
-
(2009)
Nat Rev Mol Cell Biol
, vol.10
, pp. 697-708
-
-
Simon, J.A.1
Kingston, R.E.2
-
63
-
-
83255188878
-
Cofactor binding evokes latent differences in DNA binding specificity between Hox proteins
-
Slattery M, Riley T, Liu P, Abe N, Gomez-Alcala P, Dror I, Zhou T, Rohs R, Honig B, Bussemaker HJ, et al. 2011. Cofactor binding evokes latent differences in DNA binding specificity between Hox proteins. Cell 147: 1270-1282.
-
(2011)
Cell
, vol.147
, pp. 1270-1282
-
-
Slattery, M.1
Riley, T.2
Liu, P.3
Abe, N.4
Gomez-Alcala, P.5
Dror, I.6
Zhou, T.7
Rohs, R.8
Honig, B.9
Bussemaker, H.J.10
-
64
-
-
84867120185
-
Interpreting the regulatory genome: The genomics of transcription factor function in Drosophila melanogaster
-
Slattery M, Nègre N, White KP. 2012. Interpreting the regulatory genome: the genomics of transcription factor function in Drosophila melanogaster. Brief Funct Genomics 11: 336-346.
-
(2012)
Brief Funct Genomics
, vol.11
, pp. 336-346
-
-
Slattery, M.1
Nègre, N.2
White, K.P.3
-
65
-
-
84865249952
-
Transcription factors: From enhancer binding to developmental control
-
Spitz F, Furlong EE. 2012. Transcription factors: from enhancer binding to developmental control. Nat Rev Genet 13: 613-626.
-
(2012)
Nat Rev Genet
, vol.13
, pp. 613-626
-
-
Spitz, F.1
Furlong, E.E.2
-
66
-
-
77950580571
-
Structural rules and complex regulatory circuitry constrain expression of a Notch- and EGFRregulated eye enhancer
-
Swanson CI, Evans NC, Barolo S. 2010. Structural rules and complex regulatory circuitry constrain expression of a Notch- and EGFRregulated eye enhancer. Dev Cell 18: 359-370.
-
(2010)
Dev Cell
, vol.18
, pp. 359-370
-
-
Swanson, C.I.1
Evans, N.C.2
Barolo, S.3
-
67
-
-
79956064734
-
Chromatin: Constructing the big picture
-
van Steensel B. 2011. Chromatin: constructing the big picture. EMBO J 30: 1885-1895.
-
(2011)
EMBO J
, vol.30
, pp. 1885-1895
-
-
Van Steensel, B.1
-
68
-
-
67349098844
-
Versatile P[acman] BAC libraries for transgenesis studies in Drosophila melanogaster
-
Venken KJ, Carlson JW, Schulze KL, Pan H, He Y, Spokony R, Wan KH, Koriabine M, de Jong PJ, White KP, et al. 2009. Versatile P[acman] BAC libraries for transgenesis studies in Drosophila melanogaster. Nat Methods 6: 431-434.
-
(2009)
Nat Methods
, vol.6
, pp. 431-434
-
-
Venken, K.J.1
Carlson, J.W.2
Schulze, K.L.3
Pan, H.4
He, Y.5
Spokony, R.6
Wan, K.H.7
Koriabine, M.8
De Jong, P.J.9
White, K.P.10
-
69
-
-
84867130276
-
Packaging the fly genome: Domains and dynamics
-
White R. 2012. Packaging the fly genome: domains and dynamics. Brief Funct Genomics 11: 347-355.
-
(2012)
Brief Funct Genomics
, vol.11
, pp. 347-355
-
-
White, R.1
-
70
-
-
0034796040
-
Dual functions of largest NURF subunit NURF301 in nucleosome sliding and transcription factor interactions
-
DOI 10.1016/S1097-2765(01)00345-8
-
Xiao H, Sandaltzopoulos R, Wang HM, Hamiche A, Ranallo R, Lee KM, Fu D, Wu C. 2001. Dual functions of largest NURF subunit NURF301 in nucleosome sliding and transcription factor interactions. Mol Cell 8: 531-543. (Pubitemid 32946931)
-
(2001)
Molecular Cell
, vol.8
, Issue.3
, pp. 531-543
-
-
Xiao, H.1
Sandaltzopoulos, R.2
Wang, H.-M.3
Hamiche, A.4
Ranallo, R.5
Lee, K.-M.6
Fu, D.7
Wu, C.8
-
71
-
-
0001514956
-
Identification of a Stat gene that functions in Drosophila development
-
DOI 10.1016/S0092-8674(00)81287-8
-
Yan R, Small S, Desplan C, Dearolf CR, Darnell JE Jr. 1996. Identification of a Stat gene that functions in Drosophila development. Cell 84: 421-430. (Pubitemid 26058567)
-
(1996)
Cell
, vol.84
, Issue.3
, pp. 421-430
-
-
Yan, R.1
Small, S.2
Desplan, C.3
Dearolf, C.R.4
Darnell Jr., J.E.5
-
72
-
-
0026646635
-
Drosophila ultraspiracle modulates ecdysone receptor function via heterodimer formation
-
Yao TP, Segraves WA, Oro AE, McKeown M, Evans RM. 1992. Drosophila ultraspiracle modulates ecdysone receptor function via heterodimer formation. Cell 71: 63-72.
-
(1992)
Cell
, vol.71
, pp. 63-72
-
-
Yao, T.P.1
Segraves, W.A.2
Oro, A.E.3
McKeown, M.4
Evans, R.M.5
-
73
-
-
84865754452
-
Classification of human genomic regions based on experimentally determined binding sites of more than 100 transcription-related factors
-
Yip KY, Cheng C, Bhardwaj N, Brown JB, Leng J, Kundaje A, Rozowsky J, Birney E, Bickel P, Snyder M, et al. 2012. Classification of human genomic regions based on experimentally determined binding sites of more than 100 transcription-related factors. Genome Biol 13: R48.
-
(2012)
Genome Biol
, vol.13
-
-
Yip, K.Y.1
Cheng, C.2
Bhardwaj, N.3
Brown, J.B.4
Leng, J.5
Kundaje, A.6
Rozowsky, J.7
Birney, E.8
Bickel, P.9
Snyder, M.10
-
74
-
-
36549013619
-
RNA polymerase stalling at developmental control genes in the Drosophila melanogaster embryo
-
DOI 10.1038/ng.2007.26, PII NG200726
-
Zeitlinger J, Stark A, Kellis M, Hong JW, Nechaev S, Adelman K, Levine M, Young RA. 2007. RNA polymerase stalling at developmental control genes in the Drosophila melanogaster embryo. Nat Genet 39: 1512-1516. (Pubitemid 350191345)
-
(2007)
Nature Genetics
, vol.39
, Issue.12
, pp. 1512-1516
-
-
Zeitlinger, J.1
Stark, A.2
Kellis, M.3
Hong, J.-W.4
Nechaev, S.5
Adelman, K.6
Levine, M.7
Young, R.A.8
-
75
-
-
53849146020
-
Model-based analysis of ChIPSeq (MACS)
-
Zhang Y, Liu T, Meyer CA, Eeckhoute J, Johnson DS, Bernstein BE, Nusbaum C, Myers RM, Brown M, Li W, et al. 2008. Model-based analysis of ChIPSeq (MACS). Genome Biol 9: R137.
-
(2008)
Genome Biol
, vol.9
-
-
Zhang, Y.1
Liu, T.2
Meyer, C.A.3
Eeckhoute, J.4
Johnson, D.S.5
Bernstein, B.E.6
Nusbaum, C.7
Myers, R.M.8
Brown, M.9
Li, W.10
-
76
-
-
70449132583
-
Combinatorial binding predicts spatio-temporal cis-regulatory activity
-
Zinzen RP, Girardot C, Gagneur J, Braun M, Furlong EE. 2009. Combinatorial binding predicts spatio-temporal cis-regulatory activity. Nature 462: 65-70.
-
(2009)
Nature
, vol.462
, pp. 65-70
-
-
Zinzen, R.P.1
Girardot, C.2
Gagneur, J.3
Braun, M.4
Furlong, E.E.5
|