-
1
-
-
68849103482
-
Developmental roles of 21 Drosophila transcription factors are determined by quantitative differences in binding to an overlapping set of thousands of genomic regions
-
MacArthur S, Li XY, Li J, et al. Developmental roles of 21 Drosophila transcription factors are determined by quantitative differences in binding to an overlapping set of thousands of genomic regions. GenomeBiol 2009;10:R80.
-
(2009)
GenomeBiol
, vol.10
-
-
MacArthur, S.1
Li, X.Y.2
Li, J.3
-
2
-
-
79953046943
-
Acis-regulatory map of the Drosophila genome
-
Negre N, Brown CD, Ma L, et al. A cis-regulatory map of the Drosophila genome. Nature 2011;471:527-31.
-
(2011)
Nature
, vol.471
, pp. 527-531
-
-
Negre, N.1
Brown, C.D.2
Ma, L.3
-
3
-
-
79953060951
-
Comprehensive analysis of the chromatin landscape in Drosophila melanogaster
-
Kharchenko PV, Alekseyenko AA, Schwartz YB, et al. Comprehensive analysis of the chromatin landscape in Drosophila melanogaster. Nature 2011;471:480-5.
-
(2011)
Nature
, vol.471
, pp. 480-485
-
-
Kharchenko, P.V.1
Alekseyenko, A.A.2
Schwartz, Y.B.3
-
4
-
-
77957776228
-
Systematic protein location mapping reveals five principal chromatin types in Drosophila cells
-
Filion GJ, Van Bemmel JG, Braunschweig U, et al. Systematic protein location mapping reveals five principal chromatin types in Drosophila cells. Cell 2010;143: 212-24.
-
(2010)
Cell
, vol.143
, pp. 212-224
-
-
Filion, G.J.1
Van Bemmel, J.G.2
Braunschweig, U.3
-
5
-
-
79955760882
-
Dynamic reprogramming of chromatin accessibility during Drosophila embryo development
-
Thomas S, Li XY, Sabo PJ, et al. Dynamic reprogramming of chromatin accessibility during Drosophila embryo development. Genome Biol 2011;12:R43.
-
(2011)
Genome Biol
, vol.12
-
-
Thomas, S.1
Li, X.Y.2
Sabo, P.J.3
-
6
-
-
84861733509
-
Using formaldehyde-assisted isolation of regulatory elements (FAIRE) to isolate active regulatory DNA
-
Simon JM, Giresi PG, Davis IJ, et al. Using formaldehyde-assisted isolation of regulatory elements (FAIRE) to isolate active regulatory DNA. Nat Protoc 2012;7:256-67.
-
(2012)
Nat Protoc
, vol.7
, pp. 256-267
-
-
Simon, J.M.1
Giresi, P.G.2
Davis, I.J.3
-
7
-
-
61849170193
-
Genome-wide profiling of salt fractions maps physical properties of chromatin
-
Henikoff S, Henikoff JG, Sakai A, et al. Genome-wide profiling of salt fractions maps physical properties of chromatin. Genome Res 2009;19:460-9.
-
(2009)
Genome Res
, vol.19
, pp. 460-469
-
-
Henikoff, S.1
Henikoff, J.G.2
Sakai, A.3
-
8
-
-
58149145786
-
Computational identification of site-specific transcription factors in Drosophila
-
Austin
-
Adryan B, Teichmann SA. Computational identification of site-specific transcription factors in Drosophila. Fly (Austin) 2007;1:142-5.
-
(2007)
Fly
, vol.1
, pp. 142-145
-
-
Adryan, B.1
Teichmann, S.A.2
-
9
-
-
0037083376
-
Capturing chromosome conformation
-
Dekker J, Rippe K, Dekker M, et al. Capturing chromosome conformation. Science 2002;295:1306-11.
-
(2002)
Science
, vol.295
, pp. 1306-1311
-
-
Dekker, J.1
Rippe, K.2
Dekker, M.3
-
10
-
-
70349873824
-
Comprehensive mapping of long-range interactions reveals folding principles of the human genome
-
Lieberman-Aiden E, Van Berkum NL, Williams L, et al. Comprehensive mapping of long-range interactions reveals folding principles of the human genome. Science 2009;326: 289-93.
-
(2009)
Science
, vol.326
, pp. 289-293
-
-
Lieberman-Aiden, E.1
Van Berkum, N.L.2
Williams, L.3
-
11
-
-
84856747483
-
Three-dimensional folding and functional organization principles of the Drosophila genome
-
Sexton T, Yaffe E, Kenigsberg E, et al. Three-dimensional folding and functional organization principles of the Drosophila genome. Cell 2012;148:458-72.
-
(2012)
Cell
, vol.148
, pp. 458-472
-
-
Sexton, T.1
Yaffe, E.2
Kenigsberg, E.3
-
12
-
-
35548990188
-
We gather together: insulators and genome organization
-
Wallace JA, Felsenfeld G. We gather together: insulators and genome organization. Curr Opin Genet Dev 2007;17: 400-7.
-
(2007)
Curr Opin Genet Dev
, vol.17
, pp. 400-407
-
-
Wallace, J.A.1
Felsenfeld, G.2
-
13
-
-
84862777531
-
Insulators, long-range interactions, and genome function
-
Yang J, Corces VG. Insulators, long-range interactions, and genome function. Curr Opin Genet Dev 2012;22:1-7.
-
(2012)
Curr Opin Genet Dev
, vol.22
, pp. 1-7
-
-
Yang, J.1
Corces, V.G.2
-
14
-
-
33748259774
-
CTCF mediates long-range chromatin looping and local histone modification in the beta-globin locus
-
Splinter E, Heath H, Kooren J, et al. CTCF mediates long-range chromatin looping and local histone modification in the beta-globin locus. Genes Dev 2006;20: 2349-54.
-
(2006)
Genes Dev
, vol.20
, pp. 2349-2354
-
-
Splinter, E.1
Heath, H.2
Kooren, J.3
-
15
-
-
34547627357
-
CTCF genomic binding sites in Drosophila and the organisation of the bithorax complex
-
Holohan EE, Kwong C, Adryan B, et al. CTCF genomic binding sites in Drosophila and the organisation of the bithorax complex. PLoS Genet 2007;3:e112.
-
(2007)
PLoS Genet
, vol.3
-
-
Holohan, E.E.1
Kwong, C.2
Adryan, B.3
-
16
-
-
65449116170
-
Active promoters and insulators are marked by the centrosomal protein 190
-
Bartkuhn M, Straub T, Herold M, et al. Active promoters and insulators are marked by the centrosomal protein 190. EMBOJ 2009;28:877-88.
-
(2009)
EMBO J
, vol.28
, pp. 877-888
-
-
Bartkuhn, M.1
Straub, T.2
Herold, M.3
-
17
-
-
60149095014
-
Global analysis of the insulator binding protein CTCF in chromatin barrier regions reveals demarcation of active and repressive domains
-
Cuddapah S, Jothi R, Schones DE, et al. Global analysis of the insulator binding protein CTCF in chromatin barrier regions reveals demarcation of active and repressive domains. Genome Res 2009;19:24-32.
-
(2009)
Genome Res
, vol.19
, pp. 24-32
-
-
Cuddapah, S.1
Jothi, R.2
Schones, D.E.3
-
18
-
-
76749089660
-
A comprehensive map of insulator elements for the Drosophila genome
-
Negre N, Brown CD, Shah PK, et al. A comprehensive map of insulator elements for the Drosophila genome. PLoS Genet 2010;6:e1000814.
-
(2010)
PLoS Genet
, vol.6
-
-
Negre, N.1
Brown, C.D.2
Shah, P.K.3
-
19
-
-
77958107370
-
Insulators as mediators of intra- and inter-chromosomal interactions: a common evolutionary theme
-
Ong CT, Corces VG. Insulators as mediators of intra- and inter-chromosomal interactions: a common evolutionary theme. J Biol 2009;8:73.
-
(2009)
J Biol
, vol.8
, pp. 73
-
-
Ong, C.T.1
Corces, V.G.2
-
20
-
-
19444385178
-
Chriz, a chromodomain protein specific for the interbands of Drosophila melanogaster polytene chromosomes
-
Gortchakov AA, Eggert H, Gan M, et al. Chriz, a chromodomain protein specific for the interbands of Drosophila melanogaster polytene chromosomes. Chromosoma 2005; 114:54-66.
-
(2005)
Chromosoma
, vol.114
, pp. 54-66
-
-
Gortchakov, A.A.1
Eggert, H.2
Gan, M.3
-
21
-
-
33745507605
-
The chromodomain protein, Chromator, interacts with JIL-1 kinase and regulates the structure of Drosophila polytene chromosomes
-
Rath U, Ding Y, Deng H, et al. The chromodomain protein, Chromator, interacts with JIL-1 kinase and regulates the structure of Drosophila polytene chromosomes. J Cell Sci 2006;119:2332-41.
-
(2006)
J Cell Sci
, vol.119
, pp. 2332-2341
-
-
Rath, U.1
Ding, Y.2
Deng, H.3
-
22
-
-
80054812877
-
The Chriz-Z4 complex recruits JIL-1 to polytene chromosomes, a requirement for interband-specific phosphorylation of H3S10
-
Gan M, Moebus S, Eggert H, et al. The Chriz-Z4 complex recruits JIL-1 to polytene chromosomes, a requirement for interband-specific phosphorylation of H3S10. J Biosci 2011; 36:425-38.
-
(2011)
J Biosci
, vol.36
, pp. 425-438
-
-
Gan, M.1
Moebus, S.2
Eggert, H.3
-
23
-
-
80054016582
-
Identical functional organization of nonpolytene and polytene chromosomes in Drosophila melanogaster
-
Vatolina TY, Boldyreva LV, Demakova OV, et al. Identical functional organization of nonpolytene and polytene chromosomes in Drosophila melanogaster. PLoS One 2011;6:e25960.
-
(2011)
PLoS One
, vol.6
-
-
Vatolina, T.Y.1
Boldyreva, L.V.2
Demakova, O.V.3
-
24
-
-
66149164708
-
Three subclasses of a Drosophila insulator show distinct and cell type-specific genomic distributions
-
Bushey AM, Ramos E, Corces VG. Three subclasses of a Drosophila insulator show distinct and cell type-specific genomic distributions. Genes Dev 2009;23:1338-50.
-
(2009)
Genes Dev
, vol.23
, pp. 1338-1350
-
-
Bushey, A.M.1
Ramos, E.2
Corces, V.G.3
-
25
-
-
9744257012
-
The centrosomal protein CP190 is a component of the gypsy chromatin insulator
-
Pai CY, Lei EP, Ghosh D, et al. The centrosomal protein CP190 is a component of the gypsy chromatin insulator. Mol Cell 2004;16:737-48.
-
(2004)
Mol Cell
, vol.16
, pp. 737-748
-
-
Pai, C.Y.1
Lei, E.P.2
Ghosh, D.3
-
26
-
-
80053617964
-
Regulation of chromatin organization and inducible gene expression by a Drosophila insulator
-
Wood AM, Van Bortle K, Ramos E, et al. Regulation of chromatin organization and inducible gene expression by a Drosophila insulator. Mol Cell 2011;44:29-38.
-
(2011)
Mol Cell
, vol.44
, pp. 29-38
-
-
Wood, A.M.1
Van Bortle, K.2
Ramos, E.3
-
27
-
-
0035316574
-
Chromosome territories, nuclear architecture and gene regulation in mammalian cells
-
Cremer T, Cremer C. Chromosome territories, nuclear architecture and gene regulation in mammalian cells. Nat Rev Genet 2001;2:292-301.
-
(2001)
Nat Rev Genet
, vol.2
, pp. 292-301
-
-
Cremer, T.1
Cremer, C.2
-
28
-
-
80054080265
-
Polycomb group proteins: repression in 3D
-
Bantignies F, Cavalli G. Polycomb group proteins: repression in 3D. TrendsGenet 2011;27:454-64.
-
(2011)
TrendsGenet
, vol.27
, pp. 454-464
-
-
Bantignies, F.1
Cavalli, G.2
-
29
-
-
78651514974
-
Polycomb-dependent regulatory contacts between distant Hox loci in Drosophila
-
Bantignies F, Roure V, Comet I, et al. Polycomb-dependent regulatory contacts between distant Hox loci in Drosophila. Cell 2011;144:214-26.
-
(2011)
Cell
, vol.144
, pp. 214-226
-
-
Bantignies, F.1
Roure, V.2
Comet, I.3
-
30
-
-
79953750893
-
Interactions among Polycomb domains are guided by chromosome architecture
-
Tolhuis B, Blom M, Kerkhoven RM, et al. Interactions among Polycomb domains are guided by chromosome architecture. PLoS Genet 2011;7:e1001343.
-
(2011)
PLoS Genet
, vol.7
-
-
Tolhuis, B.1
Blom, M.2
Kerkhoven, R.M.3
-
31
-
-
79251534690
-
Insulators, not Polycomb response elements, are required for long-range interactions between Polycomb targets in Drosophila melanogaster
-
Li HB, Muller M, Bahechar IA, et al. Insulators, not Polycomb response elements, are required for long-range interactions between Polycomb targets in Drosophila melanogaster. Mol Cell Biol 2011;31:616-25.
-
(2011)
Mol Cell Biol
, vol.31
, pp. 616-625
-
-
Li, H.B.1
Muller, M.2
Bahechar, I.A.3
-
32
-
-
33747072322
-
Hotspots of transcription factor colocalization in the genome of Drosophila melanogaster
-
Moorman C, Sun LV, Wang J, et al. Hotspots of transcription factor colocalization in the genome of Drosophila melanogaster. Proc Natl Acad Sci USA 2006;103: 12027-32.
-
(2006)
Proc Natl Acad Sci USA
, vol.103
, pp. 12027-12032
-
-
Moorman, C.1
Sun, L.V.2
Wang, J.3
-
33
-
-
40149095913
-
Transcription factors bind thousands of active and inactive regions in the Drosophila blastoderm
-
Li XY, MacArthur S, Bourgon R, et al. Transcription factors bind thousands of active and inactive regions in the Drosophila blastoderm. PLoS Biol 2008;6:e27.
-
(2008)
PLoS Biol
, vol.6
-
-
Li, X.Y.1
MacArthur, S.2
Bourgon, R.3
-
34
-
-
79953709415
-
The role of chromatin accessibility in directing the widespread, overlapping patterns of Drosophila transcription factor binding
-
Li XY, Thomas S, Sabo PJ, et al. The role of chromatin accessibility in directing the widespread, overlapping patterns of Drosophila transcription factor binding. Genome Biol 2011;12:R34.
-
(2011)
Genome Biol
, vol.12
-
-
Li, X.Y.1
Thomas, S.2
Sabo, P.J.3
-
35
-
-
78049440475
-
Chromatin landscape dictates HSF binding to target DNA elements
-
Guertin MJ, Lis JT. Chromatin landscape dictates HSF binding to target DNA elements. PLoS Genet 2010;6: e1001114.
-
(2010)
PLoS Genet
, vol.6
-
-
Guertin, M.J.1
Lis, J.T.2
-
36
-
-
79953689018
-
Genome-wide analysis of the binding of the Hox protein Ultrabithorax and the Hox cofactor Homothorax in Drosophila
-
Choo SW, White R, Russell S. Genome-wide analysis of the binding of the Hox protein Ultrabithorax and the Hox cofactor Homothorax in Drosophila. PLoS One 2011;6: e14778.
-
(2011)
PLoS One
, vol.6
-
-
Choo, S.W.1
White, R.2
Russell, S.3
-
37
-
-
84856239091
-
Tissue-specific analysis of chromatin state identifies temporal signatures of enhancer activity during embryonic development
-
Bonn S, Zinzen RP, Girardot C, et al. Tissue-specific analysis of chromatin state identifies temporal signatures of enhancer activity during embryonic development. Nat Genet 2012;44:148-56.
-
(2012)
Nat Genet
, vol.44
, pp. 148-156
-
-
Bonn, S.1
Zinzen, R.P.2
Girardot, C.3
|