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Volumn 21, Issue 19, 2011, Pages 1624-1634

Cohesin selectively binds and regulates genes with paused RNA polymerase

Author keywords

[No Author keywords available]

Indexed keywords

CELL CYCLE PROTEIN; COHESIN; DNA BINDING PROTEIN; DROSOPHILA PROTEIN; HISTONE; NEGATIVE ELONGATION FACTOR; NIPPED B PROTEIN, DROSOPHILA; NIPPED-B PROTEIN, DROSOPHILA; NONHISTONE PROTEIN; RAD21 PROTEIN, DROSOPHILA; RNA POLYMERASE II; SPT5 TRANSCRIPTIONAL ELONGATION FACTOR; TRANSCRIPTION ELONGATION FACTOR; TRANSCRIPTION FACTOR; TRL PROTEIN, DROSOPHILA;

EID: 80053985777     PISSN: 09609822     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.cub.2011.08.036     Document Type: Article
Times cited : (75)

References (56)
  • 1
    • 79953162010 scopus 로고    scopus 로고
    • Cohesin: Genomic insights into controlling gene transcription and development
    • D. Dorsett Cohesin: genomic insights into controlling gene transcription and development Curr. Opin. Genet. Dev. 21 2011 199 206
    • (2011) Curr. Opin. Genet. Dev. , vol.21 , pp. 199-206
    • Dorsett, D.1
  • 2
    • 58149158042 scopus 로고    scopus 로고
    • On the molecular etiology of Cornelia de Lange syndrome
    • D. Dorsett, and I.D. Krantz On the molecular etiology of Cornelia de Lange syndrome Ann. N Y Acad. Sci. 1151 2009 22 37
    • (2009) Ann. N y Acad. Sci. , vol.1151 , pp. 22-37
    • Dorsett, D.1    Krantz, I.D.2
  • 3
    • 73349127026 scopus 로고    scopus 로고
    • Cohesin: Its roles and mechanisms
    • K. Nasmyth, and C.H. Haering Cohesin: its roles and mechanisms Annu. Rev. Genet. 43 2009 525 558
    • (2009) Annu. Rev. Genet. , vol.43 , pp. 525-558
    • Nasmyth, K.1    Haering, C.H.2
  • 4
    • 78049391383 scopus 로고    scopus 로고
    • Dosage-sensitive regulation of cohesin chromosome binding and dynamics by Nipped-B, Pds5, and Wapl
    • M. Gause, Z. Misulovin, A. Bilyeu, and D. Dorsett Dosage-sensitive regulation of cohesin chromosome binding and dynamics by Nipped-B, Pds5, and Wapl Mol. Cell. Biol. 30 2010 4940 4951
    • (2010) Mol. Cell. Biol. , vol.30 , pp. 4940-4951
    • Gause, M.1    Misulovin, Z.2    Bilyeu, A.3    Dorsett, D.4
  • 5
    • 33746486793 scopus 로고    scopus 로고
    • Live-Cell Imaging Reveals a Stable Cohesin-Chromatin Interaction after but Not before DNA Replication
    • DOI 10.1016/j.cub.2006.06.068, PII S0960982206018471
    • D. Gerlich, B. Koch, F. Dupeux, J.M. Peters, and J. Ellenberg Live-cell imaging reveals a stable cohesin-chromatin interaction after but not before DNA replication Curr. Biol. 16 2006 1571 1578 (Pubitemid 44142999)
    • (2006) Current Biology , vol.16 , Issue.15 , pp. 1571-1578
    • Gerlich, D.1    Koch, B.2    Dupeux, F.3    Peters, J.-M.4    Ellenberg, J.5
  • 6
    • 77951181571 scopus 로고    scopus 로고
    • Regulators of the cohesin network
    • B. Xiong, and J.L. Gerton Regulators of the cohesin network Annu. Rev. Biochem. 79 2010 131 153
    • (2010) Annu. Rev. Biochem. , vol.79 , pp. 131-153
    • Xiong, B.1    Gerton, J.L.2
  • 7
    • 33646178283 scopus 로고    scopus 로고
    • A screen for cohesion mutants uncovers Ssl3, the fission yeast counterpart of the cohesin loading factor Scc4
    • P. Bernard, J. Drogat, J.F. Maure, S. Dheur, S. Vaur, S. Genier, and J.P. Javerzat A screen for cohesion mutants uncovers Ssl3, the fission yeast counterpart of the cohesin loading factor Scc4 Curr. Biol. 16 2006 875 881
    • (2006) Curr. Biol. , vol.16 , pp. 875-881
    • Bernard, P.1    Drogat, J.2    Maure, J.F.3    Dheur, S.4    Vaur, S.5    Genier, S.6    Javerzat, J.P.7
  • 8
    • 0033859660 scopus 로고    scopus 로고
    • Cohesin's binding to chromosomes depends on a separate complex consisting of Scc2 and Scc4 proteins
    • R. Ciosk, M. Shirayama, A. Shevchenko, T. Tanaka, A. Toth, A. Shevchenko, and K. Nasmyth Cohesin's binding to chromosomes depends on a separate complex consisting of Scc2 and Scc4 proteins Mol. Cell 5 2000 243 254 (Pubitemid 30628083)
    • (2000) Molecular Cell , vol.5 , Issue.2 , pp. 243-254
    • Ciosk, R.1    Shirayama, M.2    Shevchenko, A.3    Tanaka, T.4    Toth, A.5    Shevchenko, A.6    Nasmyth, K.7
  • 10
    • 47549096990 scopus 로고    scopus 로고
    • Cdc7-Drf1 kinase links chromosome cohesion to the initiation of DNA replication in Xenopus egg extracts
    • DOI 10.1101/gad.1683308
    • T.S. Takahashi, A. Basu, V. Bermudez, J. Hurwitz, and J.C. Walter Cdc7-Drf1 kinase links chromosome cohesion to the initiation of DNA replication in Xenopus egg extracts Genes Dev. 22 2008 1894 1905 (Pubitemid 352008638)
    • (2008) Genes and Development , vol.22 , Issue.14 , pp. 1894-1905
    • Takahashi, T.S.1    Basu, A.2    Bermudez, V.3    Hurwitz, J.4    Walter, J.C.5
  • 12
    • 25144434235 scopus 로고    scopus 로고
    • A topological interaction between cohesin rings and a circular minichromosome
    • DOI 10.1016/j.cell.2005.07.018, PII S0092867405007488
    • D. Ivanov, and K. Nasmyth A topological interaction between cohesin rings and a circular minichromosome Cell 122 2005 849 860 (Pubitemid 41345203)
    • (2005) Cell , vol.122 , Issue.6 , pp. 849-860
    • Ivanov, D.1    Nasmyth, K.2
  • 13
    • 34447309306 scopus 로고    scopus 로고
    • A Physical Assay for Sister Chromatid Cohesion In Vitro
    • DOI 10.1016/j.molcel.2007.07.002, PII S1097276507004492
    • D. Ivanov, and K. Nasmyth A physical assay for sister chromatid cohesion in vitro Mol. Cell 27 2007 300 310 (Pubitemid 47058310)
    • (2007) Molecular Cell , vol.27 , Issue.2 , pp. 300-310
    • Ivanov, D.1    Nasmyth, K.2
  • 16
    • 75649109712 scopus 로고    scopus 로고
    • Drosophila ORC localizes to open chromatin and marks sites of cohesin complex loading
    • H.K. MacAlpine, R. Gordân, S.K. Powell, A.J. Hartemink, and D.M. MacAlpine Drosophila ORC localizes to open chromatin and marks sites of cohesin complex loading Genome Res. 20 2010 201 211
    • (2010) Genome Res. , vol.20 , pp. 201-211
    • MacAlpine, H.K.1    Gordân, R.2    Powell, S.K.3    Hartemink, A.J.4    MacAlpine, D.M.5
  • 21
    • 0033018842 scopus 로고    scopus 로고
    • Nipped-B, a Drosophila homologue of chromosomal adherins, participates in activation by remote enhancers in the cut and Ultrabithorax genes
    • R.A. Rollins, P. Morcillo, and D. Dorsett Nipped-B, a Drosophila homologue of chromosomal adherins, participates in activation by remote enhancers in the cut and Ultrabithorax genes Genetics 152 1999 577 593 (Pubitemid 29272711)
    • (1999) Genetics , vol.152 , Issue.2 , pp. 577-593
    • Rollins, R.A.1    Morcillo, P.2    Dorsett, D.3
  • 24
    • 77649261872 scopus 로고    scopus 로고
    • Cell type specificity of chromatin organization mediated by CTCF and cohesin
    • C. Hou, R. Dale, and A. Dean Cell type specificity of chromatin organization mediated by CTCF and cohesin Proc. Natl. Acad. Sci. USA 107 2010 3651 3656
    • (2010) Proc. Natl. Acad. Sci. USA , vol.107 , pp. 3651-3656
    • Hou, C.1    Dale, R.2    Dean, A.3
  • 31
    • 47549090254 scopus 로고    scopus 로고
    • NELF-mediated stalling of Pol II can enhance gene expression by blocking promoter-proximal nucleosome assembly
    • DOI 10.1101/gad.1643208
    • D.A. Gilchrist, S. Nechaev, C. Lee, S.K. Ghosh, J.B. Collins, L. Li, D.S. Gilmour, and K. Adelman NELF-mediated stalling of Pol II can enhance gene expression by blocking promoter-proximal nucleosome assembly Genes Dev. 22 2008 1921 1933 (Pubitemid 352008640)
    • (2008) Genes and Development , vol.22 , Issue.14 , pp. 1921-1933
    • Gilchrist, D.A.1    Nechaev, S.2    Lee, C.3    Ghosh, S.K.B.4    Collins, J.B.5    Li, L.6    Gilmour, D.S.7    Adelman, K.8
  • 32
    • 0033515521 scopus 로고    scopus 로고
    • NELF, a multisubunit complex containing RD, cooperates with DSIF to repress RNA polymerase II elongation
    • Y. Yamaguchi, T. Takagi, T. Wada, K. Yano, A. Furuya, S. Sugimoto, J. Hasegawa, and H. Handa NELF, a multisubunit complex containing RD, cooperates with DSIF to repress RNA polymerase II elongation Cell 97 1999 41 51 (Pubitemid 29165888)
    • (1999) Cell , vol.97 , Issue.1 , pp. 41-51
    • Yamaguchi, Y.1    Takagi, T.2    Wada, T.3    Yano, K.4    Furuya, A.5    Sugimoto, S.6    Hasegawa, J.7    Handa, H.8
  • 33
    • 74549132843 scopus 로고    scopus 로고
    • Global analysis of short RNAs reveals widespread promoter-proximal stalling and arrest of Pol II in Drosophila
    • S. Nechaev, D.C. Fargo, G. dos Santos, L. Liu, Y. Gao, and K. Adelman Global analysis of short RNAs reveals widespread promoter-proximal stalling and arrest of Pol II in Drosophila Science 327 2010 335 338
    • (2010) Science , vol.327 , pp. 335-338
    • Nechaev, S.1    Fargo, D.C.2    Dos Santos, G.3    Liu, L.4    Gao, Y.5    Adelman, K.6
  • 34
    • 67849088695 scopus 로고    scopus 로고
    • Detecting transcriptionally engaged RNA polymerase in eukaryotic cells with permanganate genomic footprinting
    • D.S. Gilmour, and R. Fan Detecting transcriptionally engaged RNA polymerase in eukaryotic cells with permanganate genomic footprinting Methods 48 2009 368 374
    • (2009) Methods , vol.48 , pp. 368-374
    • Gilmour, D.S.1    Fan, R.2
  • 36
    • 38849130750 scopus 로고    scopus 로고
    • piggyBac-Based Mosaic Screen Identifies a Postmitotic Function for Cohesin in Regulating Developmental Axon Pruning
    • DOI 10.1016/j.devcel.2007.11.001, PII S1534580707004194
    • O. Schuldiner, D. Berdnik, J.M. Levy, J.S. Wu, D. Luginbuhl, A.C. Gontang, and L. Luo piggyBac-based mosaic screen identifies a postmitotic function for cohesin in regulating developmental axon pruning Dev. Cell 14 2008 227 238 (Pubitemid 351189171)
    • (2008) Developmental Cell , vol.14 , Issue.2 , pp. 227-238
    • Schuldiner, O.1    Berdnik, D.2    Levy, J.M.3    Wu, J.S.4    Luginbuhl, D.5    Gontang, A.C.6    Luo, L.7
  • 38
    • 36549013619 scopus 로고    scopus 로고
    • RNA polymerase stalling at developmental control genes in the Drosophila melanogaster embryo
    • DOI 10.1038/ng.2007.26, PII NG200726
    • J. Zeitlinger, A. Stark, M. Kellis, J.W. Hong, S. Nechaev, K. Adelman, M. Levine, and R.A. Young RNA polymerase stalling at developmental control genes in the Drosophila melanogaster embryo Nat. Genet. 39 2007 1512 1516 (Pubitemid 350191345)
    • (2007) Nature Genetics , vol.39 , Issue.12 , pp. 1512-1516
    • Zeitlinger, J.1    Stark, A.2    Kellis, M.3    Hong, J.-W.4    Nechaev, S.5    Adelman, K.6    Levine, M.7    Young, R.A.8
  • 39
    • 0037017393 scopus 로고    scopus 로고
    • Condensin and cohesin display different arm conformations with characteristic hinge angles
    • DOI 10.1083/jcb.200111002
    • D.E. Anderson, A. Losada, H.P. Erickson, and T. Hirano Condensin and cohesin display different arm conformations with characteristic hinge angles J. Cell Biol. 156 2002 419 424 (Pubitemid 34839891)
    • (2002) Journal of Cell Biology , vol.156 , Issue.3 , pp. 419-424
    • Anderson, D.E.1    Losada, A.2    Erickson, H.P.3    Hirano, T.4
  • 40
    • 0035827332 scopus 로고    scopus 로고
    • Structural basis of transcription: An RNA polymerase II elongation complex at 3.3 A resolution
    • DOI 10.1126/science.1059495
    • A.L. Gnatt, P. Cramer, J. Fu, D.A. Bushnell, and R.D. Kornberg Structural basis of transcription: an RNA polymerase II elongation complex at 3.3 A resolution Science 292 2001 1876 1882 (Pubitemid 32538357)
    • (2001) Science , vol.292 , Issue.5523 , pp. 1876-1882
    • Gnatt, A.L.1    Cramer, P.2    Fu, J.3    Bushnell, D.A.4    Kornberg, R.D.5
  • 41
    • 0032004953 scopus 로고    scopus 로고
    • Evidence that Spt4, Spt5, and Spt6 control transcription elongation by RNA polymerase II in Saccharomyces cerevisiae
    • G.A. Hartzog, T. Wada, H. Handa, and F. Winston Evidence that Spt4, Spt5, and Spt6 control transcription elongation by RNA polymerase II in Saccharomyces cerevisiae Genes Dev. 12 1998 357 369 (Pubitemid 28084264)
    • (1998) Genes and Development , vol.12 , Issue.3 , pp. 357-369
    • Hartzog, G.A.1    Wada, T.2    Handa, H.3    Winston, F.4
  • 45
    • 0037512273 scopus 로고    scopus 로고
    • The Set2 histone methyltransferase functions through the phosphorylated carboxyl-terminal domain of RNA polymerase II
    • DOI 10.1074/jbc.M212134200
    • B. Li, L. Howe, S. Anderson, J.R. Yates 3rd, and J.L. Workman The Set2 histone methyltransferase functions through the phosphorylated carboxyl-terminal domain of RNA polymerase II J. Biol. Chem. 278 2003 8897 8903 (Pubitemid 36800365)
    • (2003) Journal of Biological Chemistry , vol.278 , Issue.11 , pp. 8897-8903
    • Li, B.1    Howe, L.2    Anderson, S.3    Yates III, J.R.4    Workman, J.L.5
  • 46
    • 0037147121 scopus 로고    scopus 로고
    • Association of the histone methyltransferase Set2 with RNA polymerase II plays a role in transcription elongation
    • DOI 10.1074/jbc.M209294200
    • J. Li, D. Moazed, and S.P. Gygi Association of the histone methyltransferase Set2 with RNA polymerase II plays a role in transcription elongation J. Biol. Chem. 277 2002 49383 49388 (Pubitemid 36014370)
    • (2002) Journal of Biological Chemistry , vol.277 , Issue.51 , pp. 49383-49388
    • Li, J.1    Moazed, D.2    Gygi, S.P.3
  • 49
    • 78751595020 scopus 로고    scopus 로고
    • Polycomb preferentially targets stalled promoters of coding and noncoding transcripts
    • D. Enderle, C. Beisel, M.B. Stadler, M. Gerstung, P. Athri, and R. Paro Polycomb preferentially targets stalled promoters of coding and noncoding transcripts Genome Res. 21 2011 216 226
    • (2011) Genome Res. , vol.21 , pp. 216-226
    • Enderle, D.1    Beisel, C.2    Stadler, M.B.3    Gerstung, M.4    Athri, P.5    Paro, R.6
  • 50
    • 79955016832 scopus 로고    scopus 로고
    • Polycomb purification by in vivo biotinylation tagging reveals cohesin and Trithorax group proteins as interaction partners
    • G. Strübbe, C. Popp, A. Schmidt, A. Pauli, L. Ringrose, C. Beisel, and R. Paro Polycomb purification by in vivo biotinylation tagging reveals cohesin and Trithorax group proteins as interaction partners Proc. Natl. Acad. Sci. USA 108 2011 5572 5577
    • (2011) Proc. Natl. Acad. Sci. USA , vol.108 , pp. 5572-5577
    • Strübbe, G.1    Popp, C.2    Schmidt, A.3    Pauli, A.4    Ringrose, L.5    Beisel, C.6    Paro, R.7
  • 51
    • 67649647759 scopus 로고    scopus 로고
    • Stalled Hox promoters as chromosomal boundaries
    • V.S. Chopra, J. Cande, J.W. Hong, and M. Levine Stalled Hox promoters as chromosomal boundaries Genes Dev. 23 2009 1505 1509
    • (2009) Genes Dev. , vol.23 , pp. 1505-1509
    • Chopra, V.S.1    Cande, J.2    Hong, J.W.3    Levine, M.4
  • 52
    • 34948877575 scopus 로고    scopus 로고
    • MSL Complex Is Attracted to Genes Marked by H3K36 Trimethylation Using a Sequence-Independent Mechanism
    • DOI 10.1016/j.molcel.2007.08.011, PII S1097276507005540
    • E. Larschan, A.A. Alekseyenko, A.A. Gortchakov, S. Peng, B. Li, P. Yang, J.L. Workman, P.J. Park, and M.I. Kuroda MSL complex is attracted to genes marked by H3K36 trimethylation using a sequence-independent mechanism Mol. Cell 28 2007 121 133 (Pubitemid 47531971)
    • (2007) Molecular Cell , vol.28 , Issue.1 , pp. 121-133
    • Larschan, E.1    Alekseyenko, A.A.2    Gortchakov, A.A.3    Peng, S.4    Li, B.5    Yang, P.6    Workman, J.L.7    Park, P.J.8    Kuroda, M.I.9
  • 55
    • 28044453063 scopus 로고    scopus 로고
    • Effects of sister chromatid cohesion proteins on cut gene expression during wing development in Drosophila
    • DOI 10.1242/dev.02064
    • D. Dorsett, J.C. Eissenberg, Z. Misulovin, A. Martens, B. Redding, and K. McKim Effects of sister chromatid cohesion proteins on cut gene expression during wing development in Drosophila Development 132 2005 4743 4753 (Pubitemid 41685284)
    • (2005) Development , vol.132 , Issue.21 , pp. 4743-4753
    • Dorsett, D.1    Eissenberg, J.C.2    Misulovin, Z.3    Martens, A.4    Redding, B.5    McKim, K.6
  • 56
    • 0034667949 scopus 로고    scopus 로고
    • High-resolution localization of Drosophila Spt5 and Spt6 at heat shock genes in vivo: Roles in promoter proximal pausing and transcription elongation
    • E.D. Andrulis, E. Guzmán, P. Döring, J. Werner, and J.T. Lis High-resolution localization of Drosophila Spt5 and Spt6 at heat shock genes in vivo: roles in promoter proximal pausing and transcription elongation Genes Dev. 14 2000 2635 2649
    • (2000) Genes Dev. , vol.14 , pp. 2635-2649
    • Andrulis, E.D.1    Guzmán, E.2    Döring, P.3    Werner, J.4    Lis, J.T.5


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