-
1
-
-
77956495708
-
Transcriptional enhancers in animal development and evolution
-
Levine M (2010) Transcriptional enhancers in animal development and evolution. Curr Biol 20: R754-R763
-
(2010)
Curr Biol
, vol.20
-
-
Levine, M.1
-
3
-
-
0019811465
-
Expression of a β-globin gene is enhanced by remote SV40 DNA sequences
-
Banerji J, Rusconi S, Schaffner W (1981) Expression of a beta-globin gene is enhanced by remote SV40 DNA sequences. Cell 27: 299-308 (Pubitemid 12200499)
-
(1981)
Cell
, vol.27
, Issue.2
, pp. 299-308
-
-
Banerji, J.1
Rusconi, S.2
Schaffner, W.3
-
4
-
-
77958111633
-
The metazoan Mediator co-activator complex as an integrative hub for transcriptional regulation
-
Malik S, Roeder RG (2010) The metazoan Mediator co-activator complex as an integrative hub for transcriptional regulation. Nat Rev Genet 11: 761-772
-
(2010)
Nat Rev Genet
, vol.11
, pp. 761-772
-
-
Malik, S.1
Roeder, R.G.2
-
5
-
-
73349090560
-
Preferential associations between co-regulated genes reveal a transcriptional interactome in erythroid cells
-
Schoenfelder S et al (2010) Preferential associations between co-regulated genes reveal a transcriptional interactome in erythroid cells. Nat Genet 42: 53-61
-
(2010)
Nat Genet
, vol.42
, pp. 53-61
-
-
Schoenfelder, S.1
-
6
-
-
67650725820
-
The biology of chromatin remodeling complexes
-
Clapier CR, Cairns BR (2009) The biology of chromatin remodeling complexes. Annu Rev Biochem 78: 273-304
-
(2009)
Annu Rev Biochem
, vol.78
, pp. 273-304
-
-
Clapier, C.R.1
Cairns, B.R.2
-
7
-
-
77249117148
-
CHD7 cooperates with PBAF to control multipotent neural crest formation
-
Bajpai R et al (2010) CHD7 cooperates with PBAF to control multipotent neural crest formation. Nature 463: 958-962
-
(2010)
Nature
, vol.463
, pp. 958-962
-
-
Bajpai, R.1
-
8
-
-
70149112313
-
Histone crosstalk between H3S10ph and H4K16ac generates a histone code that mediates transcription elongation
-
Zippo A et al (2009) Histone crosstalk between H3S10ph and H4K16ac generates a histone code that mediates transcription elongation. Cell 138: 1122-1136
-
(2009)
Cell
, vol.138
, pp. 1122-1136
-
-
Zippo, A.1
-
9
-
-
79952901680
-
Enhancer function: New insights into the regulation of tissue-specific gene expression
-
Ong CT, Corces VG (2011) Enhancer function: new insights into the regulation of tissue-specific gene expression. Nat Rev Genet 12: 283-293
-
(2011)
Nat Rev Genet
, vol.12
, pp. 283-293
-
-
Ong, C.T.1
Corces, V.G.2
-
10
-
-
79953748673
-
A long noncoding RNA maintains active chromatin to coordinate homeotic gene expression
-
Wang KC et al (2011) A long noncoding RNA maintains active chromatin to coordinate homeotic gene expression. Nature 472: 120-124
-
(2011)
Nature
, vol.472
, pp. 120-124
-
-
Wang, K.C.1
-
11
-
-
77957243921
-
Long noncoding RNAs with enhancer-like function in human cells
-
Orom UA et al (2010) Long noncoding RNAs with enhancer-like function in human cells. Cell 143: 46-58
-
(2010)
Cell
, vol.143
, pp. 46-58
-
-
Orom, U.A.1
-
12
-
-
77952367798
-
Widespread transcription at neuronal activity-regulated enhancers
-
Kim TK et al (2010) Widespread transcription at neuronal activity-regulated enhancers. Nature 465: 182-187
-
(2010)
Nature
, vol.465
, pp. 182-187
-
-
Kim, T.K.1
-
13
-
-
77957139539
-
Mediator and cohesin connect gene expression and chromatin architecture
-
Kagey MH et al (2010) Mediator and cohesin connect gene expression and chromatin architecture. Nature 467: 430-435
-
(2010)
Nature
, vol.467
, pp. 430-435
-
-
Kagey, M.H.1
-
14
-
-
65649123756
-
Architectural roles of multiple chromatin insulators at the human apolipoprotein gene cluster
-
Mishiro T et al (2009) Architectural roles of multiple chromatin insulators at the human apolipoprotein gene cluster. EMBO J 28: 1234-1245
-
(2009)
EMBO J
, vol.28
, pp. 1234-1245
-
-
Mishiro, T.1
-
15
-
-
67650997080
-
Cohesins form chromosomal cis-interactions at the developmentally regulated IFNG locus
-
Hadjur S et al (2009) Cohesins form chromosomal cis-interactions at the developmentally regulated IFNG locus. Nature 460: 410-413
-
(2009)
Nature
, vol.460
, pp. 410-413
-
-
Hadjur, S.1
-
16
-
-
60149091656
-
ChIP-seq accurately predicts tissue-specific activity of enhancers
-
Visel A et al (2009) ChIP-seq accurately predicts tissue-specific activity of enhancers. Nature 457: 854-858
-
(2009)
Nature
, vol.457
, pp. 854-858
-
-
Visel, A.1
-
17
-
-
77956641239
-
ChIP-Seq identification of weakly conserved heart enhancers
-
Blow MJ et al (2010) ChIP-Seq identification of weakly conserved heart enhancers. Nat Genet 42: 806-810
-
(2010)
Nat Genet
, vol.42
, pp. 806-810
-
-
Blow, M.J.1
-
18
-
-
33847334699
-
Distinct and predictive chromatin signatures of transcriptional promoters and enhancers in the human genome
-
DOI 10.1038/ng1966, PII NG1966
-
Heintzman ND et al (2007) Distinct and predictive chromatin signatures of transcriptional promoters and enhancers in the human genome. Nat Genet 39: 311-318 (Pubitemid 46328487)
-
(2007)
Nature Genetics
, vol.39
, Issue.3
, pp. 311-318
-
-
Heintzman, N.D.1
Stuart, R.K.2
Hon, G.3
Fu, Y.4
Ching, C.W.5
Hawkins, R.D.6
Barrera, L.O.7
Van Calcar, S.8
Qu, C.9
Ching, K.A.10
Wang, W.11
Weng, Z.12
Green, R.D.13
Crawford, G.E.14
Ren, B.15
-
19
-
-
77950262538
-
Nucleosome dynamics define transcriptional enhancers
-
He HH et al (2010) Nucleosome dynamics define transcriptional enhancers. Nat Genet 42: 343-347
-
(2010)
Nat Genet
, vol.42
, pp. 343-347
-
-
He, H.H.1
-
20
-
-
68149150830
-
H3.3/H2AZ double variant-containing nucleosomes mark 'nucleosome-free regions' of active promoters and other regulatory regions
-
Jin CY et al (2009) H3.3/H2AZ double variant-containing nucleosomes mark 'nucleosome-free regions' of active promoters and other regulatory regions. Nat Genet 41: 941-945
-
(2009)
Nat Genet
, vol.41
, pp. 941-945
-
-
Jin, C.Y.1
-
21
-
-
34249026300
-
High-Resolution Profiling of Histone Methylations in the Human Genome
-
DOI 10.1016/j.cell.2007.05.009, PII S0092867407006009
-
Barski A et al (2007) High-resolution profiling of histone methylations in the human genome. Cell 129: 823-837 (Pubitemid 46802390)
-
(2007)
Cell
, vol.129
, Issue.4
, pp. 823-837
-
-
Barski, A.1
Cuddapah, S.2
Cui, K.3
Roh, T.-Y.4
Schones, D.E.5
Wang, Z.6
Wei, G.7
Chepelev, I.8
Zhao, K.9
-
22
-
-
46249112085
-
Combinatorial patterns of histone acetylations and methylations in the human genome
-
Wang ZB et al (2008) Combinatorial patterns of histone acetylations and methylations in the human genome. Nat Genet 40: 897-903
-
(2008)
Nat Genet
, vol.40
, pp. 897-903
-
-
Wang, Z.B.1
-
23
-
-
83255188897
-
Polycomb-repressed genes have permissive enhancers that initiate reprogramming
-
Taberlay PC et al (2011) Polycomb-repressed genes have permissive enhancers that initiate reprogramming. Cell 147: 1283-1294
-
(2011)
Cell
, vol.147
, pp. 1283-1294
-
-
Taberlay, P.C.1
-
24
-
-
34250745886
-
Nucleosome stability mediated by histone variants H3.3 and H2A.Z
-
DOI 10.1101/gad.1547707
-
Jin CY, Felsenfeld G (2007) Nucleosome stability mediated by histone variants H3.3 and H2A.Z. Genes Dev 21: 1519-1529 (Pubitemid 46955724)
-
(2007)
Genes and Development
, vol.21
, Issue.12
, pp. 1519-1529
-
-
Jin, C.1
Felsenfeld, G.2
-
25
-
-
61849170193
-
Genome-wide profiling of salt fractions maps physical properties of chromatin
-
Henikoff S et al (2009) Genome-wide profiling of salt fractions maps physical properties of chromatin. Genome Res 19: 460-469
-
(2009)
Genome Res
, vol.19
, pp. 460-469
-
-
Henikoff, S.1
-
26
-
-
0035834777
-
Characterization of the stability and folding of H2A.Z chromatin particles: Implications for transcriptional activation
-
DOI 10.1074/jbc.M108217200
-
Abbott DW et al (2001) Characterization of the stability and folding of H2AZ chromatin particles: implications for transcriptional activation. J Biol Chem 276: 41945-41949 (Pubitemid 37371094)
-
(2001)
Journal of Biological Chemistry
, vol.276
, Issue.45
, pp. 41945-41949
-
-
Abbott, D.W.1
Ivanova, V.S.2
Wang, X.3
Bonner, W.M.4
Ausio, J.5
-
27
-
-
79951516056
-
A unique chromatin signature uncovers early developmental enhancers in humans
-
Rada-Iglesias A et al (2011) A unique chromatin signature uncovers early developmental enhancers in humans. Nature 470: 279-283
-
(2011)
Nature
, vol.470
, pp. 279-283
-
-
Rada-Iglesias, A.1
-
28
-
-
78650758676
-
Histone H3K27ac separates active from poised enhancers and predicts developmental state
-
Creyghton MP et al (2010) Histone H3K27ac separates active from poised enhancers and predicts developmental state. Proc Natl Acad Sci USA 107: 21931-21936
-
(2010)
Proc Natl Acad Sci USA
, vol.107
, pp. 21931-21936
-
-
Creyghton, M.P.1
-
29
-
-
80051564877
-
Epigenetic signatures distinguish multiple classes of enhancers with distinct cellular functions
-
Zentner GE, Tesar PJ, Scacheri PC (2011) Epigenetic signatures distinguish multiple classes of enhancers with distinct cellular functions. Genome Res 21: 1273-1283
-
(2011)
Genome Res
, vol.21
, pp. 1273-1283
-
-
Zentner, G.E.1
Tesar, P.J.2
Scacheri, P.C.3
-
30
-
-
58049191558
-
Chromatin signatures in multipotent human hematopoietic stem cells indicate the fate of bivalent genes during differentiation
-
Cui KR et al (2009) Chromatin signatures in multipotent human hematopoietic stem cells indicate the fate of bivalent genes during differentiation. Cell Stem Cell 4: 80-93
-
(2009)
Cell Stem Cell
, vol.4
, pp. 80-93
-
-
Cui, K.R.1
-
31
-
-
65549104157
-
Histone modifications at human enhancers reflect global cell-type-specific gene expression
-
Heintzman ND et al (2009) Histone modifications at human enhancers reflect global cell-type-specific gene expression. Nature 459: 108-112
-
(2009)
Nature
, vol.459
, pp. 108-112
-
-
Heintzman, N.D.1
-
32
-
-
80052942443
-
Identification of 67 histone marks and histone lysine crotonylation as a new type of histone modification
-
Tan M et al (2011) Identification of 67 histone marks and histone lysine crotonylation as a new type of histone modification. Cell 146: 1016-1028
-
(2011)
Cell
, vol.146
, pp. 1016-1028
-
-
Tan, M.1
-
33
-
-
84856239091
-
Tissue-specific analysis of chromatin state identifies temporal signatures of enhancer activity during embryonic development
-
Bonn S et al (2012) Tissue-specific analysis of chromatin state identifies temporal signatures of enhancer activity during embryonic development. Nat Genet 44: 148-156
-
(2012)
Nat Genet
, vol.44
, pp. 148-156
-
-
Bonn, S.1
-
34
-
-
33745416080
-
Genome-scale mapping of DNase I sensitivity in vivo using tiling DNA microarrays
-
DOI 10.1038/nmeth890, PII N890
-
Sabo PJ et al (2006) Genome-scale mapping of DNase I sensitivity in vivo using tiling DNA microarrays. Nat Methods 3: 511-518 (Pubitemid 43941768)
-
(2006)
Nature Methods
, vol.3
, Issue.7
, pp. 511-518
-
-
Sabo, P.J.1
Kuehn, M.S.2
Thurman, R.3
Johnson, B.E.4
Johnson, E.M.5
Cao, H.6
Yu, M.7
Rosenzweig, E.8
Goldy, J.9
Haydock, A.10
Weaver, M.11
Shafer, A.12
Lee, K.13
Neri, F.14
Humbert, R.15
Singer, M.A.16
Richmond, T.A.17
Dorschner, M.O.18
McArthur, M.19
Hawrylycz, M.20
Green, R.D.21
Navas, P.A.22
Noble, W.S.23
Stamatoyannopoulos, J.A.24
more..
-
35
-
-
0017142124
-
Chromosomal subunits in active genes have an altered conformation
-
Weintraub H, Groudine M (1976) Chromosomal subunits in active genes have an altered conformation. Science 193: 848-856
-
(1976)
Science
, vol.193
, pp. 848-856
-
-
Weintraub, H.1
Groudine, M.2
-
36
-
-
33947098453
-
Histone replacement marks the boundaries of cis-regulatory domains
-
DOI 10.1126/science.1134004
-
Mito Y, Henikoff JG, Henikoff S (2007) Histone replacement marks the boundaries of cis-regulatory domains. Science 315: 1408-1411 (Pubitemid 46399549)
-
(2007)
Science
, vol.315
, Issue.5817
, pp. 1408-1411
-
-
Mito, Y.1
Henikoff, J.G.2
Henikoff, S.3
-
37
-
-
22744432660
-
Genome-scale identification of nucleosome positions in S. cerevisiae
-
Yuan GC et al (2005) Genome-scale identification of nucleosome positions in S. cerevisiae. Science 309: 626-630
-
(2005)
Science
, vol.309
, pp. 626-630
-
-
Yuan, G.C.1
-
38
-
-
79952184341
-
Chromatin accessibility pre-determines glucocorticoid receptor binding patterns
-
John S et al (2011) Chromatin accessibility pre-determines glucocorticoid receptor binding patterns. Nat Genet 43: 264-268
-
(2011)
Nat Genet
, vol.43
, pp. 264-268
-
-
John, S.1
-
39
-
-
0036184236
-
Opening of compacted chromatin by early developmental transcription factors HNF3 (FoxA) and GATA-4
-
DOI 10.1016/S1097-2765(02)00459-8
-
Cirillo LA et al (2002) Opening of compacted chromatin by early developmental transcription factors HNF3 (FoxA) and GATA-4. Mol Cell 9: 279-289 (Pubitemid 34195554)
-
(2002)
Molecular Cell
, vol.9
, Issue.2
, pp. 279-289
-
-
Cirillo, L.A.1
Lin, F.R.2
Cuesta, I.3
Friedman, D.4
Jarnik, M.5
Zaret, K.S.6
-
40
-
-
40849085514
-
FoxA1 translates epigenetic signatures into enhancer-driven lineage-specific transcription
-
DOI 10.1016/j.cell.2008.01.018, PII S0092867408001189
-
Lupien M et al (2008) FoxA1 translates epigenetic signatures into enhancer-driven lineage-specific transcription. Cell 132: 958-970 (Pubitemid 351391952)
-
(2008)
Cell
, vol.132
, Issue.6
, pp. 958-970
-
-
Lupien, M.1
Eeckhoute, J.2
Meyer, C.A.3
Wang, Q.4
Zhang, Y.5
Li, W.6
Carroll, J.S.7
Liu, X.S.8
Brown, M.9
-
41
-
-
82955198464
-
Recognition of enhancer element-specific histone methylation by TIP60 in transcriptional activation
-
Jeong KW et al (2011) Recognition of enhancer element-specific histone methylation by TIP60 in transcriptional activation. Nat Struct Mol Biol 18: 1358-1365
-
(2011)
Nat Struct Mol Biol
, vol.18
, pp. 1358-1365
-
-
Jeong, K.W.1
-
42
-
-
43049085949
-
Differential H3K4 Methylation Identifies Developmentally Poised Hematopoietic Genes
-
DOI 10.1016/j.devcel.2008.04.002, PII S1534580708001652
-
Orford K et al (2008) Differential H3K4 methylation identifies developmentally poised hematopoietic genes. Dev Cell 14: 798-809 (Pubitemid 351622618)
-
(2008)
Developmental Cell
, vol.14
, Issue.5
, pp. 798-809
-
-
Orford, K.1
Kharchenko, P.2
Lai, W.3
Dao, M.C.4
Worhunsky, D.J.5
Ferro, A.6
Janzen, V.7
Park, P.J.8
Scadden, D.T.9
-
43
-
-
0348184963
-
ATP-driven exchange of histone H2AZ variant catalyzed by SWR1 chromatin remodeling complex
-
DOI 10.1126/science.1090701
-
Mizuguchi G et al (2004) ATP-driven exchange of histone H2AZ variant catalyzed by SWR1 chromatin remodeling complex. Science 303: 343-348 (Pubitemid 38095768)
-
(2004)
Science
, vol.303
, Issue.5656
, pp. 343-348
-
-
Mizuguchi, G.1
Shen, X.2
Landry, J.3
Wu, W.-H.4
Sen, S.5
Wu, C.6
-
44
-
-
33846019277
-
Methylation of Lysine 4 on Histone H3: Intricacy of Writing and Reading a Single Epigenetic Mark
-
DOI 10.1016/j.molcel.2006.12.014, PII S1097276506008720
-
Ruthenburg AJ, Allis CD, Wysocka J (2007) Methylation of lysine 4 on histone H3: intricacy of writing and reading a single epigenetic mark. Mol Cell 25: 15-30 (Pubitemid 46049068)
-
(2007)
Molecular Cell
, vol.25
, Issue.1
, pp. 15-30
-
-
Ruthenburg, A.J.1
Allis, C.D.2
Wysocka, J.3
-
45
-
-
77649099092
-
Distinct factors control histone variant H3.3 localization at specific genomic regions
-
Goldberg AD et al (2010) Distinct factors control histone variant H3.3 localization at specific genomic regions. Cell 140: 678-691
-
(2010)
Cell
, vol.140
, pp. 678-691
-
-
Goldberg, A.D.1
-
46
-
-
83455243023
-
Prepatterning of developmental gene expression by modified histones before zygotic genome activation
-
Lindeman LC et al (2011) Prepatterning of developmental gene expression by modified histones before zygotic genome activation. Dev Cell 21: 993-1004
-
(2011)
Dev Cell
, vol.21
, pp. 993-1004
-
-
Lindeman, L.C.1
-
47
-
-
77950866717
-
Chromatin signature of embryonic pluripotency is established during genome activation
-
Vastenhouw NL et al (2010) Chromatin signature of embryonic pluripotency is established during genome activation. Nature 464: 922-926
-
(2010)
Nature
, vol.464
, pp. 922-926
-
-
Vastenhouw, N.L.1
-
48
-
-
79959990071
-
Regulation of mammalian DNA methyltransferases: A route to new mechanisms
-
Denis H, Ndlovu MN, Fuks F (2011) Regulation of mammalian DNA methyltransferases: a route to new mechanisms. EMBO Rep 12: 647-656
-
(2011)
EMBO Rep
, vol.12
, pp. 647-656
-
-
Denis, H.1
Ndlovu, M.N.2
Fuks, F.3
-
49
-
-
67650090496
-
Lineage-specific DNA methylation in T cells correlates with histone methylation and enhancer activity
-
Schmidl C et al (2009) Lineage-specific DNA methylation in T cells correlates with histone methylation and enhancer activity. Genome Res 19: 1165-1174
-
(2009)
Genome Res
, vol.19
, pp. 1165-1174
-
-
Schmidl, C.1
-
50
-
-
77953809032
-
Distinct epigenomic landscapes of pluripotent and lineage-committed human cells
-
Hawkins RD et al (2011) Distinct epigenomic landscapes of pluripotent and lineage-committed human cells. Cell Stem Cell 6: 479-491
-
(2011)
Cell Stem Cell
, vol.6
, pp. 479-491
-
-
Hawkins, R.D.1
-
51
-
-
77951116072
-
CpG islands influence chromatin structure via the CpG-binding protein Cfp1
-
Thomson JP et al (2010) CpG islands influence chromatin structure via the CpG-binding protein Cfp1. Nature 464: 1082-1086
-
(2010)
Nature
, vol.464
, pp. 1082-1086
-
-
Thomson, J.P.1
-
52
-
-
79955615662
-
The transcriptional and signalling networks of pluripotency
-
Ng HH, Surani MA (2011) The transcriptional and signalling networks of pluripotency. Nat Cell Biol 13: 490-496
-
(2011)
Nat Cell Biol
, vol.13
, pp. 490-496
-
-
Ng, H.H.1
Surani, M.A.2
-
53
-
-
79958263080
-
Pluripotency factors in embryonic stem cells regulate differentiation into germ layers
-
Thomson M et al (2011) Pluripotency factors in embryonic stem cells regulate differentiation into germ layers. Cell 145: 875-889
-
(2011)
Cell
, vol.145
, pp. 875-889
-
-
Thomson, M.1
-
54
-
-
77957672080
-
Epigenetic priming of a pre-B cell-specific enhancer through binding of Sox2 and Foxd3 at the ESC stage
-
Liber D et al (2010) Epigenetic priming of a pre-B cell-specific enhancer through binding of Sox2 and Foxd3 at the ESC stage. Cell Stem Cell 7: 114-126
-
(2010)
Cell Stem Cell
, vol.7
, pp. 114-126
-
-
Liber, D.1
-
55
-
-
82955247074
-
Sequentially acting Sox transcription factors in neural lineage development
-
Bergsland M et al (2011) Sequentially acting Sox transcription factors in neural lineage development. Genes Dev 25: 2453-2464
-
(2011)
Genes Dev
, vol.25
, pp. 2453-2464
-
-
Bergsland, M.1
-
56
-
-
80155137594
-
Master transcription factors determine cell-type-specific responses to TGF-beta signaling
-
Mullen AC et al (2011) Master transcription factors determine cell-type-specific responses to TGF-beta signaling. Cell 147: 565-576
-
(2011)
Cell
, vol.147
, pp. 565-576
-
-
Mullen, A.C.1
-
57
-
-
80155123782
-
Lineage regulators direct BMP and Wnt pathways to cell-specific programs during differentiation and regeneration
-
Trompouki E et al (2011) Lineage regulators direct BMP and Wnt pathways to cell-specific programs during differentiation and regeneration. Cell 147: 577-589
-
(2011)
Cell
, vol.147
, pp. 577-589
-
-
Trompouki, E.1
-
58
-
-
0031667846
-
Geminin, a neuralizing molecule that demarcates the future neural plate at the onset of gastrulation
-
Kroll KL et al (1998) Geminin, a neuralizing molecule that demarcates the future neural plate at the onset of gastrulation. Development 125: 3247-3258 (Pubitemid 28434422)
-
(1998)
Development
, vol.125
, Issue.16
, pp. 3247-3258
-
-
Kroll, K.L.1
Salic, A.N.2
Evans, L.M.3
Kirschner, M.W.4
-
59
-
-
0032511148
-
Geminin, an inhibitor of DNA replication, is degraded during mitosis
-
DOI 10.1016/S0092-8674(00)81209-X
-
McGarry TJ, Kirschner MW (1998) Geminin, an inhibitor of DNA replication, is degraded during mitosis. Cell 93: 1043-1053 (Pubitemid 28280797)
-
(1998)
Cell
, vol.93
, Issue.6
, pp. 1043-1053
-
-
McGarry, T.J.1
Kirschner, M.W.2
-
60
-
-
78650744015
-
Geminin cooperates with Polycomb to restrain multi-lineage commitment in the early embryo
-
Lim JW et al (2011) Geminin cooperates with Polycomb to restrain multi-lineage commitment in the early embryo. Development 138: 33-44
-
(2011)
Development
, vol.138
, pp. 33-44
-
-
Lim, J.W.1
-
61
-
-
79952768015
-
Geminin promotes neural fate acquisition of embryonic stem cells by maintaining chromatin in an accessible and hyperacetylated state
-
Yellajoshyula D et al (2011) Geminin promotes neural fate acquisition of embryonic stem cells by maintaining chromatin in an accessible and hyperacetylated state. Proc Natl Acad Sci USA 108: 3294-3299
-
(2011)
Proc Natl Acad Sci USA
, vol.108
, pp. 3294-3299
-
-
Yellajoshyula, D.1
-
62
-
-
80555156095
-
SAGA and ATAC histone acetyl transferase complexes regulate distinct sets of genes and ATAC defines a class of p300-independent enhancers
-
Krebs AR et al (2011) SAGA and ATAC histone acetyl transferase complexes regulate distinct sets of genes and ATAC defines a class of p300-independent enhancers. Mol Cell 44: 410-423
-
(2011)
Mol Cell
, vol.44
, pp. 410-423
-
-
Krebs, A.R.1
-
63
-
-
79956326274
-
Chromatin "prepattern" and histone modifiers in a fate choice for liver and pancreas
-
Xu CR et al (2011) Chromatin "prepattern" and histone modifiers in a fate choice for liver and pancreas. Science 332: 963-966
-
(2011)
Science
, vol.332
, pp. 963-966
-
-
Xu, C.R.1
-
64
-
-
79961022522
-
DNA methylation status predicts cell type-specific enhancer activity
-
Wiench M et al (2011) DNA methylation status predicts cell type-specific enhancer activity. EMBO J 30: 3028-3039
-
(2011)
EMBO J
, vol.30
, pp. 3028-3039
-
-
Wiench, M.1
-
65
-
-
77954659099
-
Relationship between nucleosome positioning and DNA methylation
-
Chodavarapu RK et al (2010) Relationship between nucleosome positioning and DNA methylation. Nature 466: 388-392
-
(2010)
Nature
, vol.466
, pp. 388-392
-
-
Chodavarapu, R.K.1
-
66
-
-
79953319002
-
Epigenetic switch involved in activation of pioneer factor FOXA1-dependent enhancers
-
Serandour AA et al (2011) Epigenetic switch involved in activation of pioneer factor FOXA1-dependent enhancers. Genome Res 21: 555-565
-
(2011)
Genome Res
, vol.21
, pp. 555-565
-
-
Serandour, A.A.1
-
67
-
-
72849110608
-
Transcriptional competence and the active marking of tissue-specific enhancers by defined transcription factors in embryonic and induced pluripotent stem cells
-
Xu J et al (2009) Transcriptional competence and the active marking of tissue-specific enhancers by defined transcription factors in embryonic and induced pluripotent stem cells. Genes Dev 23: 2824-2838
-
(2009)
Genes Dev
, vol.23
, pp. 2824-2838
-
-
Xu, J.1
-
68
-
-
79959911826
-
Transcription factor AP1 potentiates chromatin accessibility and glucocorticoid receptor binding
-
Biddie SC et al (2011) Transcription factor AP1 potentiates chromatin accessibility and glucocorticoid receptor binding. Mol Cell 43: 145-155
-
(2011)
Mol Cell
, vol.43
, pp. 145-155
-
-
Biddie, S.C.1
-
69
-
-
77952567987
-
Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities
-
Heinz S et al (2010) Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities. Mol Cell 38: 576-589
-
(2010)
Mol Cell
, vol.38
, pp. 576-589
-
-
Heinz, S.1
-
70
-
-
79961022267
-
Transcription initiation platforms and GTF recruitment at tissue-specific enhancers and promoters
-
Koch F et al (2011) Transcription initiation platforms and GTF recruitment at tissue-specific enhancers and promoters. Nat Struct Mol Biol 18: 956-963
-
(2011)
Nat Struct Mol Biol
, vol.18
, pp. 956-963
-
-
Koch, F.1
-
71
-
-
84856962477
-
Enhancer decommissioning by LSD1 during embryonic stem cell differentiation
-
Whyte WA et al (2012) Enhancer decommissioning by LSD1 during embryonic stem cell differentiation. Nature 482: 221-225
-
(2012)
Nature
, vol.482
, pp. 221-225
-
-
Whyte, W.A.1
-
72
-
-
83255188878
-
Cofactor binding evokes latent differences in DNA binding specificity between Hox proteins
-
Slattery M et al (2011) Cofactor binding evokes latent differences in DNA binding specificity between Hox proteins. Cell 147: 1270-1282
-
(2011)
Cell
, vol.147
, pp. 1270-1282
-
-
Slattery, M.1
-
73
-
-
78651250284
-
FOXA1 is a key determinant of estrogen receptor function and endocrine response
-
Hurtado A et al (2011) FOXA1 is a key determinant of estrogen receptor function and endocrine response. Nat Genet 43: 27-33
-
(2011)
Nat Genet
, vol.43
, pp. 27-33
-
-
Hurtado, A.1
-
74
-
-
79959699992
-
CTCF-mediated functional chromatin interactome in pluripotent cells
-
Handoko L et al (2011) CTCF-mediated functional chromatin interactome in pluripotent cells. Nat Genet 43: 630-638
-
(2011)
Nat Genet
, vol.43
, pp. 630-638
-
-
Handoko, L.1
-
75
-
-
67549119096
-
CTCF: Master weaver of the genome
-
Phillips JE, Corces VG (2009) CTCF: master weaver of the genome. Cell 137: 1194-1211
-
(2009)
Cell
, vol.137
, pp. 1194-1211
-
-
Phillips, J.E.1
Corces, V.G.2
-
76
-
-
80053131310
-
Multilineage priming of enhancer repertoires precedes commitment to the B and myeloid cell lineages in hematopoietic progenitors
-
Mercer EM et al (2011) Multilineage priming of enhancer repertoires precedes commitment to the B and myeloid cell lineages in hematopoietic progenitors. Immunity 35: 413-425
-
(2011)
Immunity
, vol.35
, pp. 413-425
-
-
Mercer, E.M.1
-
77
-
-
67749114140
-
Distinctive chromatin in human sperm packages genes for embryo development
-
Hammoud SS et al (2009) Distinctive chromatin in human sperm packages genes for embryo development. Nature 460: 473-478
-
(2009)
Nature
, vol.460
, pp. 473-478
-
-
Hammoud, S.S.1
-
78
-
-
77953292127
-
Repressive and active histone methylation mark distinct promoters in human and mouse spermatozoa
-
Brykczynska U et al (2010) Repressive and active histone methylation mark distinct promoters in human and mouse spermatozoa. Nat Struct Mol Biol 17: 679-687
-
(2010)
Nat Struct Mol Biol
, vol.17
, pp. 679-687
-
-
Brykczynska, U.1
-
79
-
-
79953321016
-
Genes for embryo development are packaged in blocks of multivalent chromatin in zebrafish sperm
-
Wu SF, Zhang H, Cairns BR (2011) Genes for embryo development are packaged in blocks of multivalent chromatin in zebrafish sperm. Genome Res 21: 578-589
-
(2011)
Genome Res
, vol.21
, pp. 578-589
-
-
Wu, S.F.1
Zhang, H.2
Cairns, B.R.3
-
80
-
-
79952899995
-
Methods for making induced pluripotent stem cells: reprogramming a la carte
-
Gonzalez F et al (2011) Methods for making induced pluripotent stem cells: reprogramming a la carte. Nat Rev Genet 12: 231-242
-
(2011)
Nat Rev Genet
, vol.12
, pp. 231-242
-
-
Gonzalez, F.1
-
81
-
-
46949085597
-
Induction of pluripotent stem cells by defined factors is greatly improved by small-molecule compounds
-
DOI 10.1038/nbt1418, PII NBT1418
-
Huangfu D et al (2008) Induction of pluripotent stem cells by defined factors is greatly improved by small-molecule compounds. Nat Biotechnol 26: 795-797 (Pubitemid 351961456)
-
(2008)
Nature Biotechnology
, vol.26
, Issue.7
, pp. 795-797
-
-
Huangfu, D.1
Maehr, R.2
Guo, W.3
Eijkelenboom, A.4
Snitow, M.5
Chen, A.E.6
Melton, D.A.7
-
82
-
-
79952264847
-
Hotspots of aberrant epigenomic reprogramming in human induced pluripotent stem cells
-
Lister R et al (2011) Hotspots of aberrant epigenomic reprogramming in human induced pluripotent stem cells. Nature 471: 68-73
-
(2011)
Nature
, vol.471
, pp. 68-73
-
-
Lister, R.1
-
83
-
-
85027958626
-
Incomplete DNA methylation underlies a transcriptional memory of somatic cells in human iPS cells
-
Ohi Y et al (2011) Incomplete DNA methylation underlies a transcriptional memory of somatic cells in human iPS cells. Nat Cell Biol 13: 541-549
-
(2011)
Nat Cell Biol
, vol.13
, pp. 541-549
-
-
Ohi, Y.1
-
84
-
-
79952900560
-
Turning straw into gold: Directing cell fate for regenerative medicine
-
Cohen DE, Melton D (2011) Turning straw into gold: directing cell fate for regenerative medicine. Nat Rev Genet 12: 243-252
-
(2011)
Nat Rev Genet
, vol.12
, pp. 243-252
-
-
Cohen, D.E.1
Melton, D.2
|