-
1
-
-
33745059535
-
Structural plasticity of single chromatin fibers revealed by torsional manipulation
-
DOI 10.1038/nsmb1087, PII N1087
-
Bancaud A, Conde e Silva N, Barbi M, Wagner G, Allemand JF, Mozziconacci J, Lavelle C, Croquette V, Victor JM, Prunell A, Viovy JL, (2006) Structural plasticity of single chromatin fibers revealed by torsional manipulation. Nat Struct Mol Biol 13: 444-450 (Pubitemid 43881585)
-
(2006)
Nature Structural and Molecular Biology
, vol.13
, Issue.5
, pp. 444-450
-
-
Bancaud, A.1
Conde E Silva, N.2
Barbi, M.3
Wagner, G.4
Allemand, J.-F.5
Mozziconacci, J.6
Lavelle, C.7
Croquette, V.8
Victor, J.-M.9
Prunell, A.10
Viovy, J.-L.11
-
2
-
-
34250803868
-
Nucleosome Chiral Transition under Positive Torsional Stress in Single Chromatin Fibers
-
DOI 10.1016/j.molcel.2007.05.037, PII S1097276507003632
-
Bancaud A, Wagner G, Conde ESN, Lavelle C, Wong H, Mozziconacci J, Barbi M, Sivolob A, Le Cam E, Mouawad L, Viovy JL, Victor JM, Prunell A, (2007) Nucleosome chiral transition under positive torsional stress in single chromatin fibers. Mol Cell 27: 135-147 (Pubitemid 46991385)
-
(2007)
Molecular Cell
, vol.27
, Issue.1
, pp. 135-147
-
-
Bancaud, A.1
Wagner, G.2
Conde E Silva, N.3
Lavelle, C.4
Wong, H.5
Mozziconacci, J.6
Barbi, M.7
Sivolob, A.8
Le Cam, E.9
Mouawad, L.10
Viovy, J.-L.11
Victor, J.-M.12
Prunell, A.13
-
3
-
-
34547626213
-
Top1- and Top2-mediated topological transitions at replication forks ensure fork progression and stability and prevent DNA damage checkpoint activation
-
DOI 10.1101/gad.432107
-
Bermejo R, Doksani Y, Capra T, Katou YM, Tanaka H, Shirahige K, Foiani M, (2007) Top1- and Top2-mediated topological transitions at replication forks ensure fork progression and stability and prevent DNA damage checkpoint activation. Genes Dev 21: 1921-1936 (Pubitemid 47204931)
-
(2007)
Genes and Development
, vol.21
, Issue.15
, pp. 1921-1936
-
-
Bermejo, R.1
Doksani, Y.2
Capra, T.3
Katou, Y.-M.4
Tanaka, H.5
Shirahige, K.6
Foiani, M.7
-
4
-
-
69449108384
-
Genome-organizing factors Top2 and Hmo1 prevent chromosome fragility at sites of S phase transcription
-
Bermejo R, Capra T, Gonzalez-Huici V, Fachinetti D, Cocito A, Natoli G, Katou Y, Mori H, Kurokawa K, Shirahige K, Foiani M, (2009) Genome-organizing factors Top2 and Hmo1 prevent chromosome fragility at sites of S phase transcription. Cell 138: 870-884
-
(2009)
Cell
, vol.138
, pp. 870-884
-
-
Bermejo, R.1
Capra, T.2
Gonzalez-Huici, V.3
Fachinetti, D.4
Cocito, A.5
Natoli, G.6
Katou, Y.7
Mori, H.8
Kurokawa, K.9
Shirahige, K.10
Foiani, M.11
-
5
-
-
78049363149
-
A method for genome-wide analysis of DNA helical tension by means of psoralen-DNA photobinding
-
Bermudez I, Garcia-Martinez J, Perez-Ortin JE, Roca J, (2010) A method for genome-wide analysis of DNA helical tension by means of psoralen-DNA photobinding. Nucleic Acids Res 38: e182
-
(2010)
Nucleic Acids Res
, vol.38
-
-
Bermudez, I.1
Garcia-Martinez, J.2
Perez-Ortin, J.E.3
Roca, J.4
-
6
-
-
4444285326
-
Overexpression and purification of DNA topoisomerase I from yeast
-
Bjornsti MA, Fertala J, (1999) Overexpression and purification of DNA topoisomerase I from yeast. Methods Mol Biol 94: 179-186
-
(1999)
Methods Mol Biol
, vol.94
, pp. 179-186
-
-
Bjornsti, M.A.1
Fertala, J.2
-
7
-
-
0023127037
-
Need for DNA topoisomerase activity as a swivel for DNA replication for transcription of ribosomal RNA
-
DOI 10.1038/326414a0
-
Brill SJ, DiNardo S, Voelkel-Meiman K, Sternglanz R, (1987) Need for DNA topoisomerase activity as a swivel for DNA replication for transcription of ribosomal RNA [published erratum appears in Nature 1987 Apr 23-29;326(6115):812] . Nature 326: 414-416 (Pubitemid 17053775)
-
(1987)
Nature
, vol.326
, Issue.6111
, pp. 414-416
-
-
Brill, S.J.1
DiNardo, S.2
Voelkel-Meiman, K.3
Sternglanz, R.4
-
8
-
-
0024299511
-
Transcription-dependent DNA supercoiling in yeast DNA topoisomerase mutants
-
Brill SJ, Sternglanz R, (1988) Transcription-dependent DNA supercoiling in yeast DNA topoisomerase mutants. Cell 54: 403-411
-
(1988)
Cell
, vol.54
, pp. 403-411
-
-
Brill, S.J.1
Sternglanz, R.2
-
9
-
-
70549099970
-
The role of supercoiling in transcriptional control of MYC and its importance in molecular therapeutics
-
Brooks TA, Hurley LH, (2009) The role of supercoiling in transcriptional control of MYC and its importance in molecular therapeutics. Nat Rev Cancer 9: 849-861
-
(2009)
Nat Rev Cancer
, vol.9
, pp. 849-861
-
-
Brooks, T.A.1
Hurley, L.H.2
-
11
-
-
84878947735
-
New mechanistic and functional insights into DNA topoisomerases
-
Chen SH, Chan NL, Hsieh TS, (2013) New mechanistic and functional insights into DNA topoisomerases. Annu Rev Biochem 82: 139-170
-
(2013)
Annu Rev Biochem
, vol.82
, pp. 139-170
-
-
Chen, S.H.1
Chan, N.L.2
Hsieh, T.S.3
-
12
-
-
2442599792
-
Structure, molecular mechanisms, and evolutionary relationships in DNA topoisomerases
-
DOI 10.1146/annurev.biophys.33.110502.140357
-
Corbett KD, Berger JM, (2004) Structure, molecular mechanisms, and evolutionary relationships in DNA topoisomerases. Annu Rev Biophys Biomol Struct 33: 95-118 (Pubitemid 38829953)
-
(2004)
Annual Review of Biophysics and Biomolecular Structure
, vol.33
, pp. 95-118
-
-
Corbett, K.D.1
Berger, J.M.2
-
13
-
-
77954957199
-
Topoisomerase I regulates open chromatin and controls gene expression in vivo
-
Durand-Dubief M, Persson J, Norman U, Hartsuiker E, Ekwall K, (2010) Topoisomerase I regulates open chromatin and controls gene expression in vivo. EMBO J 29: 2126-2134
-
(2010)
EMBO J
, vol.29
, pp. 2126-2134
-
-
Durand-Dubief, M.1
Persson, J.2
Norman, U.3
Hartsuiker, E.4
Ekwall, K.5
-
14
-
-
77954841539
-
Loss of Topoisomerase i leads to R-loop-mediated transcriptional blocks during ribosomal RNA synthesis
-
El Hage A, French SL, Beyer AL, Tollervey D, (2010) Loss of Topoisomerase I leads to R-loop-mediated transcriptional blocks during ribosomal RNA synthesis. Genes Dev 24: 1546-1558
-
(2010)
Genes Dev
, vol.24
, pp. 1546-1558
-
-
El Hage, A.1
French, S.L.2
Beyer, A.L.3
Tollervey, D.4
-
15
-
-
78751519300
-
Distinguishing the roles of Topoisomerases i and II in relief of transcription-induced torsional stress in yeast rRNA genes
-
French SL, Sikes ML, Hontz RD, Osheim YN, Lambert TE, El Hage A, Smith MM, Tollervey D, Smith JS, Beyer AL, (2011) Distinguishing the roles of Topoisomerases I and II in relief of transcription-induced torsional stress in yeast rRNA genes. Mol Cell Biol 31: 482-494
-
(2011)
Mol Cell Biol
, vol.31
, pp. 482-494
-
-
French, S.L.1
Sikes, M.L.2
Hontz, R.D.3
Osheim, Y.N.4
Lambert, T.E.5
El Hage, A.6
Smith, M.M.7
Tollervey, D.8
Smith, J.S.9
Beyer, A.L.10
-
16
-
-
84856891849
-
Topological constraints impair RNA polymerase II transcription and causes instability of plasmid-borne convergent genes
-
Garcia-Rubio ML, Aguilera A, (2012) Topological constraints impair RNA polymerase II transcription and causes instability of plasmid-borne convergent genes. Nucleic Acids Res 40: 1050-1064
-
(2012)
Nucleic Acids Res
, vol.40
, pp. 1050-1064
-
-
Garcia-Rubio, M.L.1
Aguilera, A.2
-
17
-
-
0000576165
-
DNA gyrase: An enzyme that introduces superhelical turns into DNA
-
Gellert M, Mizuuchi K, O'Dea MH, Nash HA, (1976) DNA gyrase: an enzyme that introduces superhelical turns into DNA. Proc Natl Acad Sci U S A 73: 3872-3876
-
(1976)
Proc Natl Acad Sci U S A
, vol.73
, pp. 3872-3876
-
-
Gellert, M.1
Mizuuchi, K.2
O'Dea, M.H.3
Nash, H.A.4
-
18
-
-
0023790970
-
Supercoiling of intracellular DNA can occur in eukaryotic cells
-
Giaever GN, Wang JC, (1988) Supercoiling of intracellular DNA can occur in eukaryotic cells. Cell 55: 849-856
-
(1988)
Cell
, vol.55
, pp. 849-856
-
-
Giaever, G.N.1
Wang, J.C.2
-
19
-
-
84890878831
-
Supercoiling in DNA and chromatin
-
Gilbert N, Allan J, (2014) Supercoiling in DNA and chromatin. Curr Opin Genet Dev 25: 15-21
-
(2014)
Curr Opin Genet Dev
, vol.25
, pp. 15-21
-
-
Gilbert, N.1
Allan, J.2
-
20
-
-
0036953237
-
DNA topology-mediated control of global gene expression in Escherichia coli
-
DOI 10.1146/annurev.genet.36.032902.111815
-
Hatfield GW, Benham CJ, (2002) DNA topology-mediated control of global gene expression in Escherichia coli. Annu Rev Genet 36: 175-203 (Pubitemid 36109188)
-
(2002)
Annual Review of Genetics
, vol.36
, pp. 175-203
-
-
Hatfield, G.W.1
Benham, C.J.2
-
21
-
-
0021320555
-
Torsional rigidity of DNA and length dependence of the free energy of DNA supercoiling
-
Horowitz DS, Wang JC, (1984) Torsional rigidity of DNA and length dependence of the free energy of DNA supercoiling. J Mol Biol 173: 75-91 (Pubitemid 14199550)
-
(1984)
Journal of Molecular Biology
, vol.173
, Issue.1
, pp. 75-91
-
-
Horowitz, D.S.1
Wang, J.C.2
-
22
-
-
0020529962
-
Transformation of intact yeast cells treated with alkali cations
-
Ito H, Fukuda Y, Murata K, Kimura A, (1983) Transformation of intact yeast cells treated with alkali cations. J Bacteriol 153: 163-168 (Pubitemid 13119852)
-
(1983)
Journal of Bacteriology
, vol.153
, Issue.1
, pp. 163-168
-
-
Ito, H.1
Fukuda, Y.2
Murata, K.3
Kimura, A.4
-
23
-
-
77149136409
-
Positional dependence of transcriptional inhibition by DNA torsional stress in yeast chromosomes
-
Joshi RS, Pina B, Roca J, (2010) Positional dependence of transcriptional inhibition by DNA torsional stress in yeast chromosomes. EMBO J 29: 740-748
-
(2010)
EMBO J
, vol.29
, pp. 740-748
-
-
Joshi, R.S.1
Pina, B.2
Roca, J.3
-
24
-
-
84870524315
-
Topoisomerase II is required for the production of long Pol II gene transcripts in yeast
-
Joshi RS, Pina B, Roca J, (2012) Topoisomerase II is required for the production of long Pol II gene transcripts in yeast. Nucleic Acids Res 40: 7907-7915
-
(2012)
Nucleic Acids Res
, vol.40
, pp. 7907-7915
-
-
Joshi, R.S.1
Pina, B.2
Roca, J.3
-
25
-
-
0027409470
-
Stably maintained microdomain of localized unrestrained supercoiling at a Drosophila heat shock gene locus
-
Jupe ER, Sinden RR, Cartwright IL, (1993) Stably maintained microdomain of localized unrestrained supercoiling at a Drosophila heat shock gene locus. EMBO J 12: 1067-1075 (Pubitemid 23095856)
-
(1993)
EMBO Journal
, vol.12
, Issue.3
, pp. 1067-1075
-
-
Jupe, E.R.1
Sinden, R.R.2
Cartwright, I.L.3
-
26
-
-
79952813905
-
Chromosome length influences replication-induced topological stress
-
Kegel A, Betts-Lindroos H, Kanno T, Jeppsson K, Strom L, Katou Y, Itoh T, Shirahige K, Sjogren C, (2011) Chromosome length influences replication-induced topological stress. Nature 471: 392-396
-
(2011)
Nature
, vol.471
, pp. 392-396
-
-
Kegel, A.1
Betts-Lindroos, H.2
Kanno, T.3
Jeppsson, K.4
Strom, L.5
Katou, Y.6
Itoh, T.7
Shirahige, K.8
Sjogren, C.9
-
27
-
-
0024338961
-
Function of DNA topoisomerases as replication. Swivels in saccharomyces cerevisiae
-
DOI 10.1016/0022-2836(89)90387-2
-
Kim RA, Wang JC, (1989) Function of DNA topoisomerases as replication swivels in Saccharomyces cerevisiae. J Mol Biol 208: 257-267 (Pubitemid 19199905)
-
(1989)
Journal of Molecular Biology
, vol.208
, Issue.2
, pp. 257-267
-
-
Kim, R.A.1
Wang, J.C.2
-
28
-
-
84883740518
-
Topoisomerases facilitate transcription of long genes linked to autism
-
King IF, Yandava CN, Mabb AM, Hsiao JS, Huang HS, Pearson BL, Calabrese JM, Starmer J, Parker JS, Magnuson T, Chamberlain SJ, Philpot BD, Zylka MJ, (2013) Topoisomerases facilitate transcription of long genes linked to autism. Nature 501: 58-62
-
(2013)
Nature
, vol.501
, pp. 58-62
-
-
King, I.F.1
Yandava, C.N.2
Mabb, A.M.3
Hsiao, J.S.4
Huang, H.S.5
Pearson, B.L.6
Calabrese, J.M.7
Starmer, J.8
Parker, J.S.9
Magnuson, T.10
Chamberlain, S.J.11
Philpot, B.D.12
Zylka, M.J.13
-
29
-
-
15844383117
-
Friction and torque govern the relaxation of DNA supercoils by eukaryotic topoisomerase IB
-
DOI 10.1038/nature03395
-
Koster DA, Croquette V, Dekker C, Shuman S, Dekker NH, (2005) Friction and torque govern the relaxation of DNA supercoils by eukaryotic topoisomerase IB. Nature 434: 671-674 (Pubitemid 40488562)
-
(2005)
Nature
, vol.434
, Issue.7033
, pp. 671-674
-
-
Koster, D.A.1
Croquette, V.2
Dekker, C.3
Shuman, S.4
Dekker, N.H.5
-
30
-
-
34447509295
-
Antitumour drugs impede DNA uncoiling by topoisomerase I
-
DOI 10.1038/nature05938, PII NATURE05938
-
Koster DA, Palle K, Bot ES, Bjornsti MA, Dekker NH, (2007) Antitumour drugs impede DNA uncoiling by topoisomerase I. Nature 448: 213-217 (Pubitemid 47067371)
-
(2007)
Nature
, vol.448
, Issue.7150
, pp. 213-217
-
-
Koster, D.A.1
Palle, K.2
Bot, E.S.M.3
Bjornsti, M.-A.4
Dekker, N.H.5
-
31
-
-
34347231949
-
Supercoil-driven DNA structures regulate genetic transactions
-
Kouzine F, Levens D, (2007) Supercoil-driven DNA structures regulate genetic transactions. Front Biosci 12: 4409-4423
-
(2007)
Front Biosci
, vol.12
, pp. 4409-4423
-
-
Kouzine, F.1
Levens, D.2
-
32
-
-
38849132828
-
The functional response of upstream DNA to dynamic supercoiling in vivo
-
DOI 10.1038/nsmb.1372, PII NSMB1372
-
Kouzine F, Sanford S, Elisha-Feil Z, Levens D, (2008) The functional response of upstream DNA to dynamic supercoiling in vivo. Nat Struct Mol Biol 15: 146-154 (Pubitemid 351207509)
-
(2008)
Nature Structural and Molecular Biology
, vol.15
, Issue.2
, pp. 146-154
-
-
Kouzine, F.1
Sanford, S.2
Elisha-Feil, Z.3
Levens, D.4
-
33
-
-
84875185055
-
Transcription-dependent dynamic supercoiling is a short-range genomic force
-
Kouzine F, Gupta A, Baranello L, Wojtowicz D, Ben-Aissa K, Liu J, Przytycka TM, Levens D, (2013) Transcription-dependent dynamic supercoiling is a short-range genomic force. Nat Struct Mol Biol 20: 396-403
-
(2013)
Nat Struct Mol Biol
, vol.20
, pp. 396-403
-
-
Kouzine, F.1
Gupta, A.2
Baranello, L.3
Wojtowicz, D.4
Ben-Aissa, K.5
Liu, J.6
Przytycka, T.M.7
Levens, D.8
-
34
-
-
0030901608
-
Measurement of unrestrained negative supercoiling and topological domain size in living human cells
-
DOI 10.1021/bi962396q
-
Kramer PR, Sinden RR, (1997) Measurement of unrestrained negative supercoiling and topological domain size in living human cells. Biochemistry 36: 3151-3158 (Pubitemid 27142386)
-
(1997)
Biochemistry
, vol.36
, Issue.11
, pp. 3151-3158
-
-
Kramer, P.R.1
Sinden, R.R.2
-
35
-
-
0033634688
-
Catalytic mechanism of DNA topoisomerase IB [In Process Citation]
-
Krogh BO, Shuman S, (2000) Catalytic mechanism of DNA topoisomerase IB [In Process Citation]. Mol Cell 5: 1035-1041
-
(2000)
Mol Cell
, vol.5
, pp. 1035-1041
-
-
Krogh, B.O.1
Shuman, S.2
-
36
-
-
77951896611
-
Chromatin fiber dynamics under tension and torsion
-
Lavelle C, Victor JM, Zlatanova J, (2010) Chromatin fiber dynamics under tension and torsion. Int J Mol Sci 11: 1557-1579
-
(2010)
Int J Mol Sci
, vol.11
, pp. 1557-1579
-
-
Lavelle, C.1
Victor, J.M.2
Zlatanova, J.3
-
37
-
-
0023433855
-
Supercoiling of the DNA template during transcription
-
Liu LF, Wang JC, (1987) Supercoiling of the DNA template during transcription. Proc Natl Acad Sci U S A 84: 7024-7027
-
(1987)
Proc Natl Acad Sci U S A
, vol.84
, pp. 7024-7027
-
-
Liu, L.F.1
Wang, J.C.2
-
38
-
-
0029052136
-
Presence of negative torsional tension in the promoter region of the transcriptionally poised dihydrofolate reductase gene in vivo
-
Ljungman M, Hanawalt PC, (1995) Presence of negative torsional tension in the promoter region of the transcriptionally poised dihydrofolate reductase gene in vivo. Nucleic Acids Res 23: 1782-1789
-
(1995)
Nucleic Acids Res
, vol.23
, pp. 1782-1789
-
-
Ljungman, M.1
Hanawalt, P.C.2
-
39
-
-
40049085952
-
Global transcription regulation by DNA topoisomerase i in exponentially growing Saccharomyces cerevisiae cells: Activation of telomere-proximal genes by TOP1 deletion
-
Lotito L, Russo A, Chillemi G, Bueno S, Cavalieri D, Capranico G, (2008) Global transcription regulation by DNA topoisomerase I in exponentially growing Saccharomyces cerevisiae cells: activation of telomere-proximal genes by TOP1 deletion. J Mol Biol 377: 311-322
-
(2008)
J Mol Biol
, vol.377
, pp. 311-322
-
-
Lotito, L.1
Russo, A.2
Chillemi, G.3
Bueno, S.4
Cavalieri, D.5
Capranico, G.6
-
40
-
-
4444234129
-
Visualization of unconstrained negative supercoils of DNA on polytene chromosomes of Drosophila
-
DOI 10.1242/jcs.01225
-
Matsumoto K, Hirose S, (2004) Visualization of unconstrained negative supercoils of DNA on polytene chromosomes of Drosophila. J Cell Sci 117: 3797-3805 (Pubitemid 39207318)
-
(2004)
Journal of Cell Science
, vol.117
, Issue.17
, pp. 3797-3805
-
-
Matsumoto, K.1
Hirose, S.2
-
41
-
-
0025008905
-
Chromosome engineering in Saccharomyces cerevisiae by using a site-specific recombination system of a yeast plasmid
-
Matsuzaki H, Nakajima R, Nishiyama J, Araki H, Oshima Y, (1990) Chromosome engineering in Saccharomyces cerevisiae by using a site-specific recombination system of a yeast plasmid. J Bacteriol 172: 610-618 (Pubitemid 20070368)
-
(1990)
Journal of Bacteriology
, vol.172
, Issue.2
, pp. 610-618
-
-
Matsuzaki, H.1
Nakajima, R.2
Nishiyama, J.3
Araki, H.4
Oshima, Y.5
-
42
-
-
0026012032
-
Negative supercoiling of DNA facilitates an interaction between transcription factor IID and the fibroin gene promoter
-
Mizutani M, Ohta T, Watanabe H, Handa H, Hirose S, (1991a) Negative supercoiling of DNA facilitates an interaction between transcription factor IID and the fibroin gene promoter. Proc Natl Acad Sci U S A 88: 718-722 (Pubitemid 21916094)
-
(1991)
Proceedings of the National Academy of Sciences of the United States of America
, vol.88
, Issue.3
, pp. 718-722
-
-
Mizutani, M.1
Ohta, T.2
Watanabe, H.3
Handa, H.4
Hirose, S.5
-
43
-
-
0025911279
-
DNA superhelicity affects the formation of transcription preinitiation complex on eukaryotic genes differently
-
Mizutani M, Ura K, Hirose S, (1991b) DNA superhelicity affects the formation of transcription preinitiation complex on eukaryotic genes differently. Nucleic Acids Res 19: 2907-2911 (Pubitemid 21896928)
-
(1991)
Nucleic Acids Research
, vol.19
, Issue.11
, pp. 2907-2911
-
-
Mizutani, M.1
Ura, K.2
Hirose, S.3
-
44
-
-
0035959633
-
DNA topoisomerase IIα Is required for RNA polymerase II transcription on chromatin templates
-
DOI 10.1038/35096590
-
Mondal N, Parvin JD, (2001) DNA topoisomerase IIalpha is required for RNA polymerase II transcription on chromatin templates. Nature 413: 435-438 (Pubitemid 32928600)
-
(2001)
Nature
, vol.413
, Issue.6854
, pp. 435-438
-
-
Mondal, N.1
Parvin, J.D.2
-
45
-
-
0344875486
-
Elongation by RNA polymerase II on chromatin templates requires topoisomerase activity
-
DOI 10.1093/nar/gkg705
-
Mondal N, Zhang Y, Jonsson Z, Dhar SK, Kannapiran M, Parvin JD, (2003) Elongation by RNA polymerase II on chromatin templates requires topoisomerase activity. Nucleic Acids Res 31: 5016-5024 (Pubitemid 37441868)
-
(2003)
Nucleic Acids Research
, vol.31
, Issue.17
, pp. 5016-5024
-
-
Mondal, N.1
Zhang, Y.2
Jonsson, Z.3
Dhar, S.K.4
Kannapiran, M.5
Parvin, J.D.6
-
46
-
-
84875134984
-
Transcription forms and remodels supercoiling domains unfolding large-scale chromatin structures
-
Naughton C, Avlonitis N, Corless S, Prendergast JG, Mati IK, Eijk PP, Cockroft SL, Bradley M, Ylstra B, Gilbert N, (2013) Transcription forms and remodels supercoiling domains unfolding large-scale chromatin structures. Nat Struct Mol Biol 20: 387-395
-
(2013)
Nat Struct Mol Biol
, vol.20
, pp. 387-395
-
-
Naughton, C.1
Avlonitis, N.2
Corless, S.3
Prendergast, J.G.4
Mati, I.K.5
Eijk, P.P.6
Cockroft, S.L.7
Bradley, M.8
Ylstra, B.9
Gilbert, N.10
-
48
-
-
0027168221
-
DNA topology and a minimal set of basal factors for transcription by RNA polymerase II
-
DOI 10.1016/0092-8674(93)90140-L
-
Parvin JD, Sharp PA, (1993) DNA topology and a minimal set of basal factors for transcription by RNA polymerase II. Cell 73: 533-540 (Pubitemid 23143352)
-
(1993)
Cell
, vol.73
, Issue.3
, pp. 533-540
-
-
Parvin, J.D.1
Sharp, P.A.2
-
49
-
-
84872011816
-
DNA topoisomerases maintain promoters in a state competent for transcriptional activation in Saccharomyces cerevisiae
-
Pedersen JM, Fredsoe J, Roedgaard M, Andreasen L, Mundbjerg K, Kruhoffer M, Brinch M, Schierup MH, Bjergbaek L, Andersen AH, (2012) DNA topoisomerases maintain promoters in a state competent for transcriptional activation in Saccharomyces cerevisiae. PLoS Genet 8: e1003128
-
(2012)
PLoS Genet
, vol.8
-
-
Pedersen, J.M.1
Fredsoe, J.2
Roedgaard, M.3
Andreasen, L.4
Mundbjerg, K.5
Kruhoffer, M.6
Brinch, M.7
Schierup, M.H.8
Bjergbaek, L.9
Andersen, A.H.10
-
50
-
-
0031957859
-
A topological approach to nucleosome structure and dynamics: The linking number paradox and other issues
-
Prunell A, (1998) A topological approach to nucleosome structure and dynamics: the linking number paradox and other issues. Biophys J 74: 2531-2544 (Pubitemid 28225249)
-
(1998)
Biophysical Journal
, vol.74
, Issue.5
, pp. 2531-2544
-
-
Prunell, A.1
-
51
-
-
0026727645
-
A hit-and-run system for targeted genetic manipulations in yeast
-
Roca J, Gartenberg MR, Oshima Y, Wang JC, (1992) A hit-and-run system for targeted genetic manipulations in yeast. Nucleic Acids Res 20: 4671-4672
-
(1992)
Nucleic Acids Res
, vol.20
, pp. 4671-4672
-
-
Roca, J.1
Gartenberg, M.R.2
Oshima, Y.3
Wang, J.C.4
-
52
-
-
0029678247
-
The probabilities of supercoil removal and decatenation by yeast DNA topoisomerase II
-
Roca J, Wang JC, (1996) The probabilities of supercoil removal and decatenation by yeast DNA topoisomerase II. Genes Cells 1: 17-27 (Pubitemid 126673104)
-
(1996)
Genes to Cells
, vol.1
, Issue.1
, pp. 17-27
-
-
Roca, J.1
Wang, J.C.2
-
53
-
-
80054711966
-
The torsional state of DNA within the chromosome
-
Roca J, (2011) The torsional state of DNA within the chromosome. Chromosoma 120: 323-334
-
(2011)
Chromosoma
, vol.120
, pp. 323-334
-
-
Roca, J.1
-
54
-
-
33745762610
-
Topoisomerase II, not topoisomerase I, is the proficient relaxase of nucleosomal DNA
-
DOI 10.1038/sj.emboj.7601142, PII 7601142
-
Salceda J, Fernandez X, Roca J, (2006) Topoisomerase II, not topoisomerase I, is the proficient relaxase of nucleosomal DNA. EMBO J 25: 2575-2583 (Pubitemid 44012239)
-
(2006)
EMBO Journal
, vol.25
, Issue.11
, pp. 2575-2583
-
-
Salceda, J.1
Fernandez, X.2
Roca, J.3
-
55
-
-
0026725797
-
Topoisomerases and yeast rRNA transcription: Negative supercoiling stimulates initiation and topoisomerase activity is required for elongation
-
Schultz MC, Brill SJ, Ju Q, Sternglanz R, Reeder RH, (1992) Topoisomerases and yeast rRNA transcription: negative supercoiling stimulates initiation and topoisomerase activity is required for elongation. Genes Dev 6: 1332-1341
-
(1992)
Genes Dev
, vol.6
, pp. 1332-1341
-
-
Schultz, M.C.1
Brill, S.J.2
Ju, Q.3
Sternglanz, R.4
Reeder, R.H.5
-
56
-
-
0023733467
-
Characterization of vaccinia virus DNA topoisomerase I expressed in Escherichia coli
-
Shuman S, Golder M, Moss B, (1988) Characterization of vaccinia virus DNA topoisomerase I expressed in Escherichia coli. J Biol Chem 263: 16401-16407 (Pubitemid 18262062)
-
(1988)
Journal of Biological Chemistry
, vol.263
, Issue.31
, pp. 16401-16407
-
-
Shuman, S.1
Golder, M.2
Moss, B.3
-
57
-
-
79961225321
-
Topoisomerase II binds nucleosome-free DNA and acts redundantly with topoisomerase i to enhance recruitment of RNA Pol II in budding yeast
-
Sperling AS, Jeong KS, Kitada T, Grunstein M, (2011) Topoisomerase II binds nucleosome-free DNA and acts redundantly with topoisomerase I to enhance recruitment of RNA Pol II in budding yeast. Proc Natl Acad Sci U S A 108: 12693-12698
-
(2011)
Proc Natl Acad Sci U S A
, vol.108
, pp. 12693-12698
-
-
Sperling, A.S.1
Jeong, K.S.2
Kitada, T.3
Grunstein, M.4
-
58
-
-
0032489675
-
A model for the mechanism of human topoisomerase I
-
DOI 10.1126/science.279.5356.1534
-
Stewart L, Redinbo MR, Qiu X, Hol WG, Champoux JJ, (1998) A model for the mechanism of human topoisomerase I. [see comments]. Science 279: 1534-1541 (Pubitemid 28217077)
-
(1998)
Science
, vol.279
, Issue.5356
, pp. 1534-1541
-
-
Stewart, L.1
Redinbo, M.R.2
Qiu, X.3
Hol, W.G.J.4
Champoux, J.J.5
-
59
-
-
0023691969
-
DNA supercoiling facilitates formation of the transcription initiation complex on the fibroin gene promoter
-
Tabuchi H, Hirose S, (1988) DNA supercoiling facilitates formation of the transcription initiation complex on the fibroin gene promoter. J Biol Chem 263: 15282-15287
-
(1988)
J Biol Chem
, vol.263
, pp. 15282-15287
-
-
Tabuchi, H.1
Hirose, S.2
-
60
-
-
84893755427
-
Transcription-generated torsional stress destabilizes nucleosomes
-
Teves SS, Henikoff S, (2014) Transcription-generated torsional stress destabilizes nucleosomes. Nat Struct Mol Biol 21: 88-94
-
(2014)
Nat Struct Mol Biol
, vol.21
, pp. 88-94
-
-
Teves, S.S.1
Henikoff, S.2
-
61
-
-
84885131112
-
Gene regulation and priming by topoisomerase IIalpha in embryonic stem cells
-
Thakurela S, Garding A, Jung J, Schubeler D, Burger L, Tiwari VK, (2013) Gene regulation and priming by topoisomerase IIalpha in embryonic stem cells. Nat Commun 4: 2478
-
(2013)
Nat Commun
, vol.4
, pp. 2478
-
-
Thakurela, S.1
Garding, A.2
Jung, J.3
Schubeler, D.4
Burger, L.5
Tiwari, V.K.6
-
63
-
-
0035910427
-
Circular minichromosomes become highly recombinogenic in topoisomerase-deficient yeast cells
-
Trigueros S, Roca J, (2001) Circular minichromosomes become highly recombinogenic in topoisomerase-deficient yeast cells. J Biol Chem 276: 2243-2248 (Pubitemid 32109708)
-
(2001)
Journal of Biological Chemistry
, vol.276
, Issue.3
, pp. 2243-2248
-
-
Trigueros, S.1
Roca, J.2
-
64
-
-
0037020238
-
Failure to relax negative supercoiling of DNA is a primary cause of mitotic hyper-recombination in topoisomerase-deficient yeast cells
-
Trigueros S, Roca J, (2002) Failure to relax negative supercoiling of DNA is a primary cause of mitotic hyper-recombination in topoisomerase-deficient yeast cells. J Biol Chem 277: 37207-37211
-
(2002)
J Biol Chem
, vol.277
, pp. 37207-37211
-
-
Trigueros, S.1
Roca, J.2
-
66
-
-
0031695155
-
Moving one DNA double helix through another by a type II DNA topoisomerase: The story of a simple molecular machine
-
DOI 10.1017/S0033583598003424
-
Wang JC, (1998) Moving one DNA double helix through another by a type II DNA topoisomerase: the story of a simple molecular machine. Q Rev Biophys 31: 107-144 (Pubitemid 28448731)
-
(1998)
Quarterly Reviews of Biophysics
, vol.31
, Issue.2
, pp. 107-144
-
-
Wang, J.C.1
-
67
-
-
0036085460
-
Cellular roles of DNA topoisomerases: A molecular perspective
-
DOI 10.1038/nrm831
-
Wang JC, (2002) Cellular roles of DNA topoisomerases: a molecular perspective. Nat Rev Mol Cell Biol 3: 430-440 (Pubitemid 34685700)
-
(2002)
Nature Reviews Molecular Cell Biology
, vol.3
, Issue.6
, pp. 430-440
-
-
Wang, J.C.1
-
68
-
-
0024519424
-
Inducible overexpression, purification, and active site mapping of DNA topoisomerase II from the yeast Saccharomyces cerevisiae
-
Worland ST, Wang JC, (1989) Inducible overexpression, purification, and active site mapping of DNA topoisomerase II from the yeast Saccharomyces cerevisiae. J Biol Chem 264: 4412-4416 (Pubitemid 19081341)
-
(1989)
Journal of Biological Chemistry
, vol.264
, Issue.8
, pp. 4412-4416
-
-
Worland, S.T.1
Wang, J.C.2
|