-
1
-
-
0035476708
-
Coping with kinetic and thermodynamic barriers. RMCE, an efficient strategy for the targeted integration of transgenes
-
Baer A., Bode J. Coping with kinetic and thermodynamic barriers. RMCE, an efficient strategy for the targeted integration of transgenes. Curr. Opin. Biotechnol. 2001, 12:473-480. 10.1016/S0958-1669(00)00248-2.
-
(2001)
Curr. Opin. Biotechnol.
, vol.12
, pp. 473-480
-
-
Baer, A.1
Bode, J.2
-
2
-
-
0040186086
-
Transcriptional properties of genomic transgene integration sites marked by electroporation or retroviral infection
-
Baer A., Schuebeler D., Bode J. Transcriptional properties of genomic transgene integration sites marked by electroporation or retroviral infection. Biochemistry (USA) 2000, 39:7041-7049. 10.1021/bi992957o.
-
(2000)
Biochemistry (USA)
, vol.39
, pp. 7041-7049
-
-
Baer, A.1
Schuebeler, D.2
Bode, J.3
-
3
-
-
47249136130
-
Histone modifications and nuclear architecture: a review
-
(Off. J. Histochem. Soc.)
-
Bártová E., Krejcí J., Harnicarová A., Galiová G., Kozubek S. Histone modifications and nuclear architecture: a review. J. Histochem. Cytochem. 2008, 56:711-721. (Off. J. Histochem. Soc.). 10.1369/jhc.2008.951251.
-
(2008)
J. Histochem. Cytochem.
, vol.56
, pp. 711-721
-
-
Bártová, E.1
Krejcí, J.2
Harnicarová, A.3
Galiová, G.4
Kozubek, S.5
-
4
-
-
84896980415
-
A chimeric HS4-SAR insulator (IS2) that prevents silencing and enhances expression of lentiviral vectors in pluripotent stem cells
-
Benabdellah K., Gutierrez-Guerrero A., Cobo M., Muñoz P., Martín F. A chimeric HS4-SAR insulator (IS2) that prevents silencing and enhances expression of lentiviral vectors in pluripotent stem cells. PLoS ONE 2014, 9:e84268. 10.1371/journal.pone.0084268.
-
(2014)
PLoS ONE
, vol.9
-
-
Benabdellah, K.1
Gutierrez-Guerrero, A.2
Cobo, M.3
Muñoz, P.4
Martín, F.5
-
5
-
-
0030451101
-
Computation of DNA structural variability - a new predictor of DNA regulatory regions
-
Benham C.J. Computation of DNA structural variability - a new predictor of DNA regulatory regions. Comput. Appl. Biosci. 1996, 12:375-381. 10.1093/bioinformatics/12.5.375.
-
(1996)
Comput. Appl. Biosci.
, vol.12
, pp. 375-381
-
-
Benham, C.J.1
-
6
-
-
3142731457
-
WebSIDD. Server for predicting stress-induced duplex destabilized (SIDD) sites in superhelical DNA
-
(Oxf. Engl)
-
Bi C., Benham C.J. WebSIDD. Server for predicting stress-induced duplex destabilized (SIDD) sites in superhelical DNA. Bioinformatics 2004, 20:1477-1479. (Oxf. Engl). 10.1093/bioinformatics/bth304.
-
(2004)
Bioinformatics
, vol.20
, pp. 1477-1479
-
-
Bi, C.1
Benham, C.J.2
-
7
-
-
2342446492
-
Lentiviral and MLV based retroviral vectors for ex vivo and in vivo gene transfer
-
Blesch A. Lentiviral and MLV based retroviral vectors for ex vivo and in vivo gene transfer. Methods San Diego Calif. 2004, 33:164-172. 10.1016/j.ymeth.2003.11.005.
-
(2004)
Methods San Diego Calif.
, vol.33
, pp. 164-172
-
-
Blesch, A.1
-
8
-
-
0000908807
-
Transcription-promoting genomic sites in Mammalia their elucidation and architectural principles
-
Bode J., Bartsch J., Boulikas T., Iber M., Mielke C., Schuebeler D., Seibler J., Benham C. Transcription-promoting genomic sites in Mammalia their elucidation and architectural principles. Gene Ther. Mol. Biol. 1998, 1:551-580. (http://gtmb.org/read.php?article=429).
-
(1998)
Gene Ther. Mol. Biol.
, vol.1
, pp. 551-580
-
-
Bode, J.1
Bartsch, J.2
Boulikas, T.3
Iber, M.4
Mielke, C.5
Schuebeler, D.6
Seibler, J.7
Benham, C.8
-
9
-
-
0033790710
-
The transgeneticist's toolbox novel methods for the targeted modification of eukaryotic genomes
-
Bode J., Schlake T., Iber M., Schuebeler D., Seibler J., Snezhkov E., Nikolaev L. The transgeneticist's toolbox novel methods for the targeted modification of eukaryotic genomes. Biol. Chem. 2000, 381:801-813. 10.1515/BC.2000.103.
-
(2000)
Biol. Chem.
, vol.381
, pp. 801-813
-
-
Bode, J.1
Schlake, T.2
Iber, M.3
Schuebeler, D.4
Seibler, J.5
Snezhkov, E.6
Nikolaev, L.7
-
10
-
-
0034103927
-
Transcriptional augmentation modulation of gene expression by scaffold/matrix-attached regions (S/MAR elements)
-
(PMID: 10813396)
-
Bode J., Benham C., Knopp A., Mielke C. Transcriptional augmentation modulation of gene expression by scaffold/matrix-attached regions (S/MAR elements). Crit. Rev. Eukaryot. Gene Expr. 2000, 10:73-90. (PMID: 10813396). 10.1515/BC.2000.103.
-
(2000)
Crit. Rev. Eukaryot. Gene Expr.
, vol.10
, pp. 73-90
-
-
Bode, J.1
Benham, C.2
Knopp, A.3
Mielke, C.4
-
11
-
-
0002507185
-
The hitchhiking principle optimizing episomal vectors for the use in gene therapy and biotechnology
-
Bode J., Fetzer C.P., Nehlsen K., Scinteie M., Hinrichs B.H., Baiker A., Piechaczek C., Benham C., Lipps H.J. The hitchhiking principle optimizing episomal vectors for the use in gene therapy and biotechnology. Gene Ther. Mol. Biol. 2001, 6:33-46. (http://gtmb.org/pages/Vol6/HTML/03.%20Bode.htm).
-
(2001)
Gene Ther. Mol. Biol.
, vol.6
, pp. 33-46
-
-
Bode, J.1
Fetzer, C.P.2
Nehlsen, K.3
Scinteie, M.4
Hinrichs, B.H.5
Baiker, A.6
Piechaczek, C.7
Benham, C.8
Lipps, H.J.9
-
12
-
-
36148982566
-
Architecture and utilization of highly expressed genomic sites
-
Bode J., Götze S., Ernst E., Huesemann Y., Baer A., Seibler J., Mielke C. Architecture and utilization of highly expressed genomic sites. New Compr. Biochem. 2003, 38:551-572. 10.1016/S0167-7306(03)38032-9.
-
(2003)
New Compr. Biochem.
, vol.38
, pp. 551-572
-
-
Bode, J.1
Götze, S.2
Ernst, E.3
Huesemann, Y.4
Baer, A.5
Seibler, J.6
Mielke, C.7
-
13
-
-
0041878327
-
From DNA structure to gene expression: mediators of nuclear compartmentalization and dynamics
-
Bode J., Götze S., Heng H., Krawetz S.A., Benham C. From DNA structure to gene expression: mediators of nuclear compartmentalization and dynamics. Chromosome Res. 2003, 11:435-445. 10.1023/A:1024918525818.
-
(2003)
Chromosome Res.
, vol.11
, pp. 435-445
-
-
Bode, J.1
Götze, S.2
Heng, H.3
Krawetz, S.A.4
Benham, C.5
-
14
-
-
34147171123
-
Q2ChIP, a quick and quantitative chromatin immunoprecipitation assay, unravels epigenetic dynamics of developmentally regulated genes in human carcinoma cells
-
Dahl J.A., Collas P. Q2ChIP, a quick and quantitative chromatin immunoprecipitation assay, unravels epigenetic dynamics of developmentally regulated genes in human carcinoma cells. Stem Cells 2007, 25:1037-1046.
-
(2007)
Stem Cells
, vol.25
, pp. 1037-1046
-
-
Dahl, J.A.1
Collas, P.2
-
15
-
-
34249952425
-
Human T-cell leukemia virus type 1 integration target sites in the human genome. Comparison with those of other retroviruses
-
Derse D., Crise B., Li Y., Princler G., Lum N., Stewart C., McGrath C.F., Hughes S.H., Munroe D.J., Wu X. Human T-cell leukemia virus type 1 integration target sites in the human genome. Comparison with those of other retroviruses. J. Virol. 2007, 81:6731-6741. 10.1128/JVI.02752-06.
-
(2007)
J. Virol.
, vol.81
, pp. 6731-6741
-
-
Derse, D.1
Crise, B.2
Li, Y.3
Princler, G.4
Lum, N.5
Stewart, C.6
McGrath, C.F.7
Hughes, S.H.8
Munroe, D.J.9
Wu, X.10
-
16
-
-
79955663440
-
Insertional oncogenesis by non-acute retroviruses. Implications for gene therapy
-
Fan H., Johnson C. Insertional oncogenesis by non-acute retroviruses. Implications for gene therapy. Viruses 2011, 3:398-422.
-
(2011)
Viruses
, vol.3
, pp. 398-422
-
-
Fan, H.1
Johnson, C.2
-
17
-
-
63449134700
-
The functional role of S/MARs in episomal vectors as defined by the stress-induced destabilization profile of the vector sequences
-
Giannakopoulos A., Stavrou E.F., Zarkadis I., Zoumbos N., Thrasher A.J., Athanassiadou A. The functional role of S/MARs in episomal vectors as defined by the stress-induced destabilization profile of the vector sequences. J. Mol. Biol. 2009, 387:1239-1249. 10.1016/j.jmb.2009.02.043.
-
(2009)
J. Mol. Biol.
, vol.387
, pp. 1239-1249
-
-
Giannakopoulos, A.1
Stavrou, E.F.2
Zarkadis, I.3
Zoumbos, N.4
Thrasher, A.J.5
Athanassiadou, A.6
-
18
-
-
77649250416
-
LEDGF hybrids efficiently retarget lentiviral integration into heterochromatin
-
Gijsbers R., Ronen K., Vets S., Malani N., De Rijck J., McNeely M., Bushman F.D., Debyser Z. LEDGF hybrids efficiently retarget lentiviral integration into heterochromatin. Mol. Ther. 2010, 18:552-560. 10.1038/mt.2010.36.
-
(2010)
Mol. Ther.
, vol.18
, pp. 552-560
-
-
Gijsbers, R.1
Ronen, K.2
Vets, S.3
Malani, N.4
De Rijck, J.5
McNeely, M.6
Bushman, F.D.7
Debyser, Z.8
-
19
-
-
82355171876
-
Role of the PWWP domain of lens epithelium-derived growth factor (LEDGF)/p75 cofactor in lentiviral integration targeting
-
Gijsbers R., Vets S., Rijck J.D., Ocwieja K.E., Ronen K., Malani N., Bushman F.D., Debyser Z. Role of the PWWP domain of lens epithelium-derived growth factor (LEDGF)/p75 cofactor in lentiviral integration targeting. J. Biol. Chem. 2011, 286:41812-41825. 10.1074/jbc.M111.255711.
-
(2011)
J. Biol. Chem.
, vol.286
, pp. 41812-41825
-
-
Gijsbers, R.1
Vets, S.2
Rijck, J.D.3
Ocwieja, K.E.4
Ronen, K.5
Malani, N.6
Bushman, F.D.7
Debyser, Z.8
-
20
-
-
49049084124
-
Scaffold/matrix attachment regions (S/MARs). relevance for disease and therapy
-
E. Klussmann, J.D. Scott (Eds.) Protein-protein interact
-
Gluch A., Vidakovic M., Bode J. Scaffold/matrix attachment regions (S/MARs). relevance for disease and therapy. New Drug Targets 2008, 67-103. 10.1007/978-3-540-72843-6_4. E. Klussmann, J.D. Scott (Eds.).
-
(2008)
New Drug Targets
, pp. 67-103
-
-
Gluch, A.1
Vidakovic, M.2
Bode, J.3
-
21
-
-
0037794034
-
Functional characterization of transgene integration patterns by halo fluorescence in situ hybridization. Electroporation versus retroviral infection
-
Goetze S., Huesemann Y., Baer A., Bode J. Functional characterization of transgene integration patterns by halo fluorescence in situ hybridization. Electroporation versus retroviral infection. Biochemistry (USA) 2003, 42:7035-7043. 10.1021/bi0340907.
-
(2003)
Biochemistry (USA)
, vol.42
, pp. 7035-7043
-
-
Goetze, S.1
Huesemann, Y.2
Baer, A.3
Bode, J.4
-
22
-
-
0037435614
-
Computational and in vitro analysis of destabilized DNA regions in the interferon gene cluster. Potential of predicting functional gene domains
-
Goetze S., Gluch A., Benham C., Bode J. Computational and in vitro analysis of destabilized DNA regions in the interferon gene cluster. Potential of predicting functional gene domains. Biochemistry (USA) 2003, 42:154-166. 10.1021/bi026496.
-
(2003)
Biochemistry (USA)
, vol.42
, pp. 154-166
-
-
Goetze, S.1
Gluch, A.2
Benham, C.3
Bode, J.4
-
23
-
-
14844342575
-
Performance of genomic bordering elements at predefined genomic loci
-
Goetze S., Baer A., Winkelmann S., Nehlsen K., Seibler J., Maass K., Bode J. Performance of genomic bordering elements at predefined genomic loci. Mol. Cell. Biol. 2005, 25:2260-2272. 10.1128/MCB.25.6.2260-2272.2005.
-
(2005)
Mol. Cell. Biol.
, vol.25
, pp. 2260-2272
-
-
Goetze, S.1
Baer, A.2
Winkelmann, S.3
Nehlsen, K.4
Seibler, J.5
Maass, K.6
Bode, J.7
-
24
-
-
84887146788
-
Bromo-and extraterminal domain chromatin regulators serve as cofactors for murine leukemia virus integration
-
Gupta S.S., Maetzig T., Maertens G.N., Sharif A., Rothe M., Weidner-Glunde M., Galla M., Schambach A., Cherepanov P., Schulz T.F. Bromo-and extraterminal domain chromatin regulators serve as cofactors for murine leukemia virus integration. J. Virol. 2013, 87:12721-12736. 10.1128/JVI.01942-13.
-
(2013)
J. Virol.
, vol.87
, pp. 12721-12736
-
-
Gupta, S.S.1
Maetzig, T.2
Maertens, G.N.3
Sharif, A.4
Rothe, M.5
Weidner-Glunde, M.6
Galla, M.7
Schambach, A.8
Cherepanov, P.9
Schulz, T.F.10
-
25
-
-
59249089461
-
A novel co-crystal structure affords the design of gain-of-function lentiviral integrase mutants in the presence of modified PSIP1/LEDGF/p75
-
Hare S., Shun M.-C., Gupta S.S., Valkov E., Engelman A., Cherepanov P. A novel co-crystal structure affords the design of gain-of-function lentiviral integrase mutants in the presence of modified PSIP1/LEDGF/p75. PLoS Pathog. 2009, 5:e1000259. 10.1371/journal.ppat.1000259.
-
(2009)
PLoS Pathog.
, vol.5
-
-
Hare, S.1
Shun, M.-C.2
Gupta, S.S.3
Valkov, E.4
Engelman, A.5
Cherepanov, P.6
-
26
-
-
84903517637
-
Filling a gap: S/MAR-based replicating minicircles
-
Heinz N., Broll S., Schleef M., Baum C., Bode J. Filling a gap: S/MAR-based replicating minicircles. CliniBook Clinigene Netw. 2012, 271-277.
-
(2012)
CliniBook Clinigene Netw.
-
-
Heinz, N.1
Broll, S.2
Schleef, M.3
Baum, C.4
Bode, J.5
-
27
-
-
24144499181
-
Matrix attachment regions as targets for retroviral integration
-
Johnson C.N., Levy L.S. Matrix attachment regions as targets for retroviral integration. Virol. J. 2005, 2-68. 10.1186/1743-422X-2-68.
-
(2005)
Virol. J.
, pp. 2-68
-
-
Johnson, C.N.1
Levy, L.S.2
-
28
-
-
0029932546
-
On the use of double FLP recognition targets (FRTs) in the LTR of retroviruses for the construction of high producer cell lines
-
Karreman S., Hauser H., Karreman C. On the use of double FLP recognition targets (FRTs) in the LTR of retroviruses for the construction of high producer cell lines. Nucleic Acids Res. 1996, 24:1616-1624. 10.1093/nar/24.9.1616.
-
(1996)
Nucleic Acids Res.
, vol.24
, pp. 1616-1624
-
-
Karreman, S.1
Hauser, H.2
Karreman, C.3
-
29
-
-
57749169030
-
Nucleosome positioning in the NPTII neomycin phosphotransferase gene on a yeast plasmid in the repressed and active states
-
Kiryanov G.I., Isayeva L.V., Kintsurashvili L.N., Zakharova M.G. Nucleosome positioning in the NPTII neomycin phosphotransferase gene on a yeast plasmid in the repressed and active states. Mol. Biol. 2008, 42:917-924.
-
(2008)
Mol. Biol.
, vol.42
, pp. 917-924
-
-
Kiryanov, G.I.1
Isayeva, L.V.2
Kintsurashvili, L.N.3
Zakharova, M.G.4
-
30
-
-
84906244724
-
DNA polymorphism and epigenetic marks modulate the affinity of a scaffold/matrix attachment region to the nuclear matrix
-
Kisseljova N.P., Dmitriev P., Katargin A., Kim E., Ezerina D., Markozashvili D., Malysheva D., Planche E., Lemmers R.J.L.F., van der Maarel S.M., Laoudj-Chenivesse D., Lipinski M., Vassetzky Y.S. DNA polymorphism and epigenetic marks modulate the affinity of a scaffold/matrix attachment region to the nuclear matrix. Eur. J. Hum. Genet 2014, (http://dx.doi.org/10.1038/ejhg.2013.306). 10.1038/ejhg.2013.306.
-
(2014)
Eur. J. Hum. Genet
-
-
Kisseljova, N.P.1
Dmitriev, P.2
Katargin, A.3
Kim, E.4
Ezerina, D.5
Markozashvili, D.6
Malysheva, D.7
Planche, E.8
Lemmers, R.J.L.F.9
van der Maarel, S.M.10
Laoudj-Chenivesse, D.11
Lipinski, M.12
Vassetzky, Y.S.13
-
31
-
-
27644564304
-
Enhance some formation over the beta interferon promoter underlies a remote-control mechanism mediated by YY1 and YY2
-
Klar M., Bode J. Enhance some formation over the beta interferon promoter underlies a remote-control mechanism mediated by YY1 and YY2. Mol. Cell. Biol. 2005, 25:10159-10170. 10.1128/MCB.25.22.10159-10170.2005.
-
(2005)
Mol. Cell. Biol.
, vol.25
, pp. 10159-10170
-
-
Klar, M.1
Bode, J.2
-
32
-
-
28844491415
-
Dominant genomic structures. Detection and potential signal functions in the interferon-beta domain
-
Klar M., Stellamanns E., AK P., Gluch A., Bode J. Dominant genomic structures. Detection and potential signal functions in the interferon-beta domain. Gene 2005, 364:79-89. 10.1016/j.gene.2005.07.023.
-
(2005)
Gene
, vol.364
, pp. 79-89
-
-
Klar, M.1
Stellamanns, E.2
AK, P.3
Gluch, A.4
Bode, J.5
-
33
-
-
84899925923
-
Modified lentiviral LTRs allow Flp recombinase-mediated cassette exchange and in vivo tracing of "factor-free" induced pluripotent stem cells
-
Kuehle J., Turan S., Cantz T., Hoffmann D., Suerth J.D., Maetzig T., Zychlinski D., Klein C., Steinemann D., Baum C., Bode J., Schambach A. Modified lentiviral LTRs allow Flp recombinase-mediated cassette exchange and in vivo tracing of "factor-free" induced pluripotent stem cells. Mol. Ther. 2014, 22:919-928. 10.1038/mt.2014.4.
-
(2014)
Mol. Ther.
, vol.22
, pp. 919-928
-
-
Kuehle, J.1
Turan, S.2
Cantz, T.3
Hoffmann, D.4
Suerth, J.D.5
Maetzig, T.6
Zychlinski, D.7
Klein, C.8
Steinemann, D.9
Baum, C.10
Bode, J.11
Schambach, A.12
-
34
-
-
0023433855
-
Supercoiling of the DNA template during transcription
-
Liu L.F., Wang J.C. Supercoiling of the DNA template during transcription. Proc. Natl. Acad. Sci. 1987, 84:7024-7027.
-
(1987)
Proc. Natl. Acad. Sci.
, vol.84
, pp. 7024-7027
-
-
Liu, L.F.1
Wang, J.C.2
-
35
-
-
0027279031
-
Activity of yeast FLP recombinase in maize and rice protoplasts
-
Lyznik L.A., Mitchell J.C., Hirayama L., Hodges T.K. Activity of yeast FLP recombinase in maize and rice protoplasts. Nucleic Acids Res. 1993, 21:969-975. 10.1093/nar/21.4.969.
-
(1993)
Nucleic Acids Res.
, vol.21
, pp. 969-975
-
-
Lyznik, L.A.1
Mitchell, J.C.2
Hirayama, L.3
Hodges, T.K.4
-
36
-
-
67649512575
-
Active site electrostatics protect genome integrity by blocking abortive hydrolysis during DNA recombination
-
Ma C.-H., Rowley P.A., Macieszak A., Guga P., Jayaram M. Active site electrostatics protect genome integrity by blocking abortive hydrolysis during DNA recombination. EMBO J. 2009, 28:1745-1756.
-
(2009)
EMBO J.
, vol.28
, pp. 1745-1756
-
-
Ma, C.-H.1
Rowley, P.A.2
Macieszak, A.3
Guga, P.4
Jayaram, M.5
-
37
-
-
84898841748
-
-
(Article 111. Transposable element "roo" attaches to nuclear matrix of the Drosophila melanogaster
-
Mamillapalli A., Pathak R.U., Garapati H.S., Mishra R.K. J. Insect Sci. 2013, 13. (Article 111. Transposable element "roo" attaches to nuclear matrix of the Drosophila melanogaster. http://www.insectscience.org/13.111/).
-
(2013)
J. Insect Sci.
, vol.13
-
-
Mamillapalli, A.1
Pathak, R.U.2
Garapati, H.S.3
Mishra, R.K.4
-
38
-
-
0036208002
-
Scaffold/matrix attachment region elements interact with a p300-scaffold attachment factor A complex and are bound by acetylated nucleosomes
-
Martens J.H.A., Verlaan M., Kalkhoven E., Dorsman J.C., Zantema A. Scaffold/matrix attachment region elements interact with a p300-scaffold attachment factor A complex and are bound by acetylated nucleosomes. Mol. Cell. Biol. 2002, 22:2598-2606.
-
(2002)
Mol. Cell. Biol.
, vol.22
, pp. 2598-2606
-
-
Martens, J.H.A.1
Verlaan, M.2
Kalkhoven, E.3
Dorsman, J.C.4
Zantema, A.5
-
39
-
-
77949268941
-
Chromatin tethering and retroviral integration: recent discoveries and parallels with DNA viruses
-
Meehan A.M., Poeschla E.M. Chromatin tethering and retroviral integration: recent discoveries and parallels with DNA viruses. Biochim. Biophys. Acta BBA-Gene Regul. Mech. 2010, 1799:182-191. 10.1016/j.bbagrm.2009.10.001.
-
(2010)
Biochim. Biophys. Acta BBA-Gene Regul. Mech.
, vol.1799
, pp. 182-191
-
-
Meehan, A.M.1
Poeschla, E.M.2
-
40
-
-
0030025649
-
Anatomy of highly expressing chromosomal sites targeted by retroviral vectors
-
Mielke C., Maass K., Tuemmler M., Bode J. Anatomy of highly expressing chromosomal sites targeted by retroviral vectors. Biochemistry (USA) 1996, 35:2239-2252. 10.1021/bi952393y.
-
(1996)
Biochemistry (USA)
, vol.35
, pp. 2239-2252
-
-
Mielke, C.1
Maass, K.2
Tuemmler, M.3
Bode, J.4
-
41
-
-
0035698667
-
Multiple collagen I gene regulatory elements have sites of stress-induced DNA duplex destabilization and nuclear scaffold/matrix association potential
-
Mielke C., Christensen M.O., Westergaard O., Bode J., Benham C.J., Breindl M. Multiple collagen I gene regulatory elements have sites of stress-induced DNA duplex destabilization and nuclear scaffold/matrix association potential. J. Cell. Biochem. 2002, 84:484-496. 10.1002/jcb.10034.
-
(2002)
J. Cell. Biochem.
, vol.84
, pp. 484-496
-
-
Mielke, C.1
Christensen, M.O.2
Westergaard, O.3
Bode, J.4
Benham, C.J.5
Breindl, M.6
-
42
-
-
84885507754
-
Replicating minicircles. Overcoming the limitations of transient and stable expression systems
-
Nehlsen K., Broll S., Kandimalla R., Heinz N., Heine M., Binius S., Schambach A., Bode J. Replicating minicircles. Overcoming the limitations of transient and stable expression systems. Minicircle Miniplasmid DNA Vectors 2013, 115-163. 10.1002/9783527670420.ch8.
-
(2013)
Minicircle Miniplasmid DNA Vectors
, pp. 115-163
-
-
Nehlsen, K.1
Broll, S.2
Kandimalla, R.3
Heinz, N.4
Heine, M.5
Binius, S.6
Schambach, A.7
Bode, J.8
-
43
-
-
0024503977
-
Histone acetylation reduces nucleosome core particle linking number change
-
Norton V.G., Imai B.S., Yau P., Bradbury E.M. Histone acetylation reduces nucleosome core particle linking number change. Cell 1989, 57:449-457.
-
(1989)
Cell
, vol.57
, pp. 449-457
-
-
Norton, V.G.1
Imai, B.S.2
Yau, P.3
Bradbury, E.M.4
-
44
-
-
0025847620
-
Recombinase-mediated gene activation and site-specific integration in mammalian cells
-
O'Gorman S., Fox D.T., Wahl G.M. Recombinase-mediated gene activation and site-specific integration in mammalian cells. Science 1991, 251:1351-1355. 10.1126/science.1900642.
-
(1991)
Science
, vol.251
, pp. 1351-1355
-
-
O'Gorman, S.1
Fox, D.T.2
Wahl, G.M.3
-
45
-
-
78751502820
-
Generation of stable, high-producing cho cell lines by lentiviral vector-mediated gene transfer in serum-free suspension culture
-
Oberbek A., Matasci M., Hacker D.L., Wurm F.M. Generation of stable, high-producing cho cell lines by lentiviral vector-mediated gene transfer in serum-free suspension culture. Biotechnol. Bioeng. 2011, 108:600-610. 10.1002/bit.22968.
-
(2011)
Biotechnol. Bioeng.
, vol.108
, pp. 600-610
-
-
Oberbek, A.1
Matasci, M.2
Hacker, D.L.3
Wurm, F.M.4
-
46
-
-
33747360766
-
Recommended method for chromosome exploitation. rmce-based cassette-exchange systems in animal cell biotechnology
-
Oumard A., Qiao J., Jostock T., Li J., Bode J. Recommended method for chromosome exploitation. rmce-based cassette-exchange systems in animal cell biotechnology. Cytotechnology 2006, 50:93-108. 10.1007/s10616-006-6550-0.
-
(2006)
Cytotechnology
, vol.50
, pp. 93-108
-
-
Oumard, A.1
Qiao, J.2
Jostock, T.3
Li, J.4
Bode, J.5
-
47
-
-
78651337233
-
Genomic safe harbors permit high β-globin transgene expression in thalassemia induced pluripotent stem cells
-
Papapetrou E.P., Lee G., Malani N., Setty M., Riviere I., Tirunagari L.M.S., Kadota K., Roth S.L., Giardina P., Viale A., Leslie C., Bushman F.D., Studer L., Sadelain M. Genomic safe harbors permit high β-globin transgene expression in thalassemia induced pluripotent stem cells. Nat. Biotechnol. 2011, 29:73-78. 10.1038/nbt.1717.
-
(2011)
Nat. Biotechnol.
, vol.29
, pp. 73-78
-
-
Papapetrou, E.P.1
Lee, G.2
Malani, N.3
Setty, M.4
Riviere, I.5
Tirunagari, L.M.S.6
Kadota, K.7
Roth, S.L.8
Giardina, P.9
Viale, A.10
Leslie, C.11
Bushman, F.D.12
Studer, L.13
Sadelain, M.14
-
48
-
-
84896818529
-
In vivo mapping of Arabidopsis scaffold/matrix attachment regions reveals link to nucleosome-disfavoring poly (dA. dT) tracts
-
(Online tpc-113)
-
Pascuzzi P.E., Flores-Vergara M.A., Lee T.-J., Sosinski B., Vaughn M.W., Hanley-Bowdoin L., Thompson W.F., Allen G.C. In vivo mapping of Arabidopsis scaffold/matrix attachment regions reveals link to nucleosome-disfavoring poly (dA. dT) tracts. Plant Cell 2014, (Online tpc-113). 10.1105/tpc.113.
-
(2014)
Plant Cell
-
-
Pascuzzi, P.E.1
Flores-Vergara, M.A.2
Lee, T.-J.3
Sosinski, B.4
Vaughn, M.W.5
Hanley-Bowdoin, L.6
Thompson, W.F.7
Allen, G.C.8
-
49
-
-
84888618358
-
MAR-mediated integration of plasmid vectors for in vivo gene transfer and regulation
-
Puttini S., Zwieten R.W., van Saugy D., Lekka M., Hogger F., Ley D., Kulik A.J., Mermod N. MAR-mediated integration of plasmid vectors for in vivo gene transfer and regulation. BMC Mol. Biol. 2013, 14:26. 10.1186/1471-2199-14-26.
-
(2013)
BMC Mol. Biol.
, vol.14
, pp. 26
-
-
Puttini, S.1
Zwieten, R.W.2
van Saugy, D.3
Lekka, M.4
Hogger, F.5
Ley, D.6
Kulik, A.J.7
Mermod, N.8
-
51
-
-
67649321244
-
Novel tag-and-exchange (RMCE) strategies generate master cell clones with predictable and stable transgene expression properties
-
Qiao J., Oumard A., Wegloehner W., Bode J. Novel tag-and-exchange (RMCE) strategies generate master cell clones with predictable and stable transgene expression properties. J. Mol. Biol. 2009, 390:579-594. 10.1016/j.jmb.2009.05.012.
-
(2009)
J. Mol. Biol.
, vol.390
, pp. 579-594
-
-
Qiao, J.1
Oumard, A.2
Wegloehner, W.3
Bode, J.4
-
52
-
-
84655170273
-
Safe harbours for the integration of new DNA in the human genome
-
Sadelain M., Papapetrou E.P., Bushman F.D. Safe harbours for the integration of new DNA in the human genome. Nat. Rev. Cancer 2012, 12:51-58. 10.1038/nrc3179.
-
(2012)
Nat. Rev. Cancer
, vol.12
, pp. 51-58
-
-
Sadelain, M.1
Papapetrou, E.P.2
Bushman, F.D.3
-
53
-
-
0024041732
-
Site-specific DNA recombination in mammalian cells by the Cre recombinase of bacteriophage P1
-
Sauer B., Henderson N. Site-specific DNA recombination in mammalian cells by the Cre recombinase of bacteriophage P1. Proc. Natl. Acad. Sci. U. S. A. 1988, 85:5166-5170. 10.1073/pnas.85.14.5166.
-
(1988)
Proc. Natl. Acad. Sci. U. S. A.
, vol.85
, pp. 5166-5170
-
-
Sauer, B.1
Henderson, N.2
-
54
-
-
77954009587
-
Efficient conditional and promoter-specific in vivo expression of cDNAs of choice by taking advantage of recombinase-mediated cassette exchange using FlEx gene traps
-
Schebelle L., Wolf C., Stribl C., Javaheri T., Schnuetgen F., Ettinger A., Ivics Z., Hansen J., Ruiz P., Melchner H., von Wurst W., Floss T. Efficient conditional and promoter-specific in vivo expression of cDNAs of choice by taking advantage of recombinase-mediated cassette exchange using FlEx gene traps. Nucleic Acids Res. 2010, 38(9):e106. 10.1093/nar/gkq044.
-
(2010)
Nucleic Acids Res.
, vol.38
, Issue.9
-
-
Schebelle, L.1
Wolf, C.2
Stribl, C.3
Javaheri, T.4
Schnuetgen, F.5
Ettinger, A.6
Ivics, Z.7
Hansen, J.8
Ruiz, P.9
Melchner, H.10
von Wurst, W.11
Floss, T.12
-
55
-
-
0025067358
-
Transcriptionally active genome regions are preferred targets for retrovirus integration
-
Scherdin U., Rhodes K., Breindl M. Transcriptionally active genome regions are preferred targets for retrovirus integration. J. Virol. 1990, 64:907-912. (http://www.ncbi.nlm.nih.gov/pmc/articles/PMC249188/pdf/jvirol00057-0453.pdf).
-
(1990)
J. Virol.
, vol.64
, pp. 907-912
-
-
Scherdin, U.1
Rhodes, K.2
Breindl, M.3
-
56
-
-
0028109636
-
Use of mutated FLP recognition target (FRT) sites for the exchange of expression cassettes at defined chromosomal loci
-
Schlake T., Bode J. Use of mutated FLP recognition target (FRT) sites for the exchange of expression cassettes at defined chromosomal loci. Biochemistry (USA) 1994, 33:12746-12751. 10.1021/bi00209a003.
-
(1994)
Biochemistry (USA)
, vol.33
, pp. 12746-12751
-
-
Schlake, T.1
Bode, J.2
-
57
-
-
0029758174
-
Scaffold/matrix-attached regions act upon transcription in a context-dependent manner
-
Schuebeler D., Mielke C., Maass K., Bode J. Scaffold/matrix-attached regions act upon transcription in a context-dependent manner. Biochemistry (USA) 1996, 35:11160-11169. 10.1021/bi960930o.
-
(1996)
Biochemistry (USA)
, vol.35
, pp. 11160-11169
-
-
Schuebeler, D.1
Mielke, C.2
Maass, K.3
Bode, J.4
-
58
-
-
0031034460
-
Double-reciprocal crossover mediated by FLP-recombinase a concept and an assay
-
Seibler J., Bode J. Double-reciprocal crossover mediated by FLP-recombinase a concept and an assay. Biochemistry (USA) 1997, 36:1740-1747. 10.1021/bi962443e.
-
(1997)
Biochemistry (USA)
, vol.36
, pp. 1740-1747
-
-
Seibler, J.1
Bode, J.2
-
59
-
-
0029838374
-
Sequence analysis of the human DNA flanking sites of human immunodeficiency virus type 1 integration
-
Stevens S.W., Griffith J.D. Sequence analysis of the human DNA flanking sites of human immunodeficiency virus type 1 integration. J. Virol. 1996, 70:6459-6462.
-
(1996)
J. Virol.
, vol.70
, pp. 6459-6462
-
-
Stevens, S.W.1
Griffith, J.D.2
-
61
-
-
82655181514
-
Site-specific recombinases from tag-and-target-to tag-and-exchange-based genomic modifications
-
Turan S., Bode J. Site-specific recombinases from tag-and-target-to tag-and-exchange-based genomic modifications. FASEB J. 2011, 25:4088-4107. 10.1096/fj.11-186940.
-
(2011)
FASEB J.
, vol.25
, pp. 4088-4107
-
-
Turan, S.1
Bode, J.2
-
62
-
-
77956123402
-
Multiplexing RMCE. Versatile extensions of the Flp-recombinase-mediated cassette-exchange technology
-
Turan S., Kuehle J., Schambach A., Baum C., Bode J. Multiplexing RMCE. Versatile extensions of the Flp-recombinase-mediated cassette-exchange technology. J. Mol. Biol. 2010, 402(52-69):28. 10.1016/j.jmb.2010.07.015.
-
(2010)
J. Mol. Biol.
, vol.402
, Issue.52-69
, pp. 28
-
-
Turan, S.1
Kuehle, J.2
Schambach, A.3
Baum, C.4
Bode, J.5
-
63
-
-
79952310557
-
Recombinase-mediated cassette exchange (RMCE). Traditional concepts and current challenges
-
Turan S., Galla M., Ernst E., Qiao J., Voelkel C., Schiedlmeier B., Zehe C., Bode J. Recombinase-mediated cassette exchange (RMCE). Traditional concepts and current challenges. J. Mol. Biol. 2011, 407(2):193-221. 10.1016/j.jmb.2011.01.004.
-
(2011)
J. Mol. Biol.
, vol.407
, Issue.2
, pp. 193-221
-
-
Turan, S.1
Galla, M.2
Ernst, E.3
Qiao, J.4
Voelkel, C.5
Schiedlmeier, B.6
Zehe, C.7
Bode, J.8
-
64
-
-
84872271412
-
Recombinase-mediated cassette exchange (RMCE) - a rapidly-expanding toolbox for targeted genomic modifications
-
Turan S., Zehe C., Kuehle J., Qiao J., Bode J. Recombinase-mediated cassette exchange (RMCE) - a rapidly-expanding toolbox for targeted genomic modifications. Gene 2013, 515:1-2722. 10.1016/j.gene.2012.11.016.
-
(2013)
Gene
, vol.515
, pp. 1-2722
-
-
Turan, S.1
Zehe, C.2
Kuehle, J.3
Qiao, J.4
Bode, J.5
-
65
-
-
16244386233
-
Weak palindromic consensus sequences are a common feature found at the integration target sites of many retroviruses
-
Wu X., Li Y., Crise B., Burgess S.M., Munroe D.J. Weak palindromic consensus sequences are a common feature found at the integration target sites of many retroviruses. J. Virol. 2005, 79:5211-5214. 10.1128/JVI.79.8.5211-5214.2005.
-
(2005)
J. Virol.
, vol.79
, pp. 5211-5214
-
-
Wu, X.1
Li, Y.2
Crise, B.3
Burgess, S.M.4
Munroe, D.J.5
-
66
-
-
59649099231
-
Lentiviral integration preferences in transgenic mice
-
(N. Y. N)
-
Yang S.-H., Cheng P.-H., Sullivan R.T., Thomas J.W., Chan A.W.S. Lentiviral integration preferences in transgenic mice. Genesis 2008, 46(12):711-718. (N. Y. N). 10.1002/dvg.20435.
-
(2008)
Genesis
, vol.46
, Issue.12
, pp. 711-718
-
-
Yang, S.-H.1
Cheng, P.-H.2
Sullivan, R.T.3
Thomas, J.W.4
Chan, A.W.S.5
|