-
1
-
-
0024295412
-
Chromosomal ARS and CEN elements bind specifically to the yeast nuclear scaffold
-
Amati BB, Gasser SM. 1988. Chromosomal ARS and CEN elements bind specifically to the yeast nuclear scaffold. Cell 54(7): 967-978.
-
(1988)
Cell
, vol.54
, Issue.7
, pp. 967-978
-
-
Amati, B.B.1
Gasser, S.M.2
-
2
-
-
0017687532
-
Nuclear matrix. Isolation and characterization of a frameworkstructure from rat liver nuclei
-
Berezney R, Coffey DS. 1977. Nuclear matrix. Isolation and characterization of a frameworkstructure from rat liver nuclei. The Journal of Cell Biology 73(3): 616-637.
-
(1977)
The Journal of Cell Biology
, vol.73
, Issue.3
, pp. 616-637
-
-
Berezney, R.1
Coffey, D.S.2
-
3
-
-
0032414848
-
The new paradigm: Integrating genomic function and nuclear architecture
-
Berezney R, Wei X. 1998. The new paradigm: integrating genomic function and nuclear architecture. Journal of Cellular Biochemistry Supplement 30-31: 238-242.
-
(1998)
Journal of Cellular Biochemistry Supplement
, vol.30-31
, pp. 238-242
-
-
Berezney, R.1
Wei, X.2
-
4
-
-
0027215759
-
Nature of DNA sequences at the attachment regions of genes to the nuclear matrix
-
Boulikas T. 1993. Nature of DNA sequences at the attachment regions of genes to the nuclear matrix. Journal of Cellular Biochemistry 52(1): 14-22.
-
(1993)
Journal of Cellular Biochemistry
, vol.52
, Issue.1
, pp. 14-22
-
-
Boulikas, T.1
-
5
-
-
0029077187
-
Mesoderm-specific B104 expression in the Drosophila embryo is mediated by internal cis-acting elements of the transposon
-
Brönner G, Taubert H, Jackle H. 1995. Mesoderm-specific B104 expression in the Drosophila embryo is mediated by internal cis-acting elements of the transposon. Chromosoma 103(10): 669-675.
-
(1995)
Chromosoma
, vol.103
, Issue.10
, pp. 669-675
-
-
Brönner, G.1
Taubert, H.2
Jackle, H.3
-
6
-
-
0042978644
-
Visualization of chromatin domains created by the gypsy insulator of Drosophila
-
Byrd K, Corces VG. 2003. Visualization of chromatin domains created by the gypsy insulator of Drosophila. The Journal of Cell Biology 162(4): 565-574.
-
(2003)
The Journal of Cell Biology
, vol.162
, Issue.4
, pp. 565-574
-
-
Byrd, K.1
Corces, V.G.2
-
7
-
-
0038369968
-
Tissue-specific nuclear architecture and gene expression regulated by SATB1
-
Cai S, Han HJ, Kohwi-Shingematsu T. 2003. Tissue-specific nuclear architecture and gene expression regulated by SATB1. Nature Genetics 34(1): 42-51.
-
(2003)
Nature Genetics
, vol.34
, Issue.1
, pp. 42-51
-
-
Cai, S.1
Han, H.J.2
Kohwi-Shingematsu, T.3
-
8
-
-
0033546210
-
The organization of replication and transcription
-
Cook PR.1999. The organization of replication and transcription. Science 284(5421): 1790-1795.
-
(1999)
Science
, vol.284
, Issue.5421
, pp. 1790-1795
-
-
Cook, P.R.1
-
9
-
-
0035316574
-
Chromosome territories, nuclear architecture and generegulation in mammalian cells
-
Cremer T, Cremer C. 2001. Chromosome territories, nuclear architecture and generegulation in mammalian cells. Nature Reviews: Genetics 2(4): 292-301.
-
(2001)
Nature Reviews: Genetics
, vol.2
, Issue.4
, pp. 292-301
-
-
Cremer, T.1
Cremer, C.2
-
11
-
-
0038487568
-
The insulator binding protein CTCF associates with the nuclear matrix
-
Dunn KL, Zhao H, Davie JR. 2003. The insulator binding protein CTCF associates with the nuclear matrix. Experimental Cell Research 288(1): 218-223.
-
(2003)
Experimental Cell Research
, vol.288
, Issue.1
, pp. 218-223
-
-
Dunn, K.L.1
Zhao, H.2
Davie, J.R.3
-
12
-
-
0025372116
-
Progressive changes in the protein composition of the nuclear matrix during rat osteoblast differentiation
-
Dworetzky SI, Fey FG, Penman S, Lian JB, Stein JL, Stein GS. 1990. Progressive changes in the protein composition of the nuclear matrix during rat osteoblast differentiation. Proceedings of the National Academy of Sciences USA 87(12): 4605-4609.
-
(1990)
Proceedings of the National Academy of Sciences USA
, vol.87
, Issue.12
, pp. 4605-4609
-
-
Dworetzky, S.I.1
Fey, F.G.2
Penman, S.3
Lian, J.B.4
Stein, J.L.5
Stein, G.S.6
-
13
-
-
34147175089
-
A comparitive study of S/MAR prediction tools
-
Evans K, Ott S, Hansen A, Koentges G, Wernisch L.2007. A comparitive study of S/MAR prediction tools. BMC Bioinformatics 8: 71-100.
-
(2007)
BMC Bioinformatics
, vol.8
, pp. 71-100
-
-
Evans, K.1
Ott, S.2
Hansen, A.3
Koentges, G.4
Wernisch, L.5
-
14
-
-
0023704381
-
Nuclear matrix proteins reflect cell type of origin in cultured human cells
-
Fey FG, Penman S. 1988. Nuclear matrix proteins reflect cell type of origin in cultured human cells. Proceedings of the National Academy of Sciences USA 85(1): 121-125.
-
(1988)
Proceedings of the National Academy of Sciences USA
, vol.85
, Issue.1
, pp. 121-125
-
-
Fey, F.G.1
Penman, S.2
-
15
-
-
0023050122
-
Cohabitation of scaffold binding regions with upstream/enhancer elements of three developmentally regulated genes of D. Melanogaster
-
Gasser SM, Laemmli UK.1986. Cohabitation of scaffold binding regions with upstream/enhancer elements of three developmentally regulated genes of D. melanogaster. Cell 46(4): 521-530.
-
(1986)
Cell
, vol.46
, Issue.4
, pp. 521-530
-
-
Gasser, S.M.1
Laemmli, U.K.2
-
16
-
-
77951284583
-
Linear plasmid vector for cloning of repetitive or unstable sequences in Escherichia coli
-
Godiska R, Mead D, Dhodda V, Wu C, Hochstein R, Karsi A, Usdin K, Entezam A, Ravin N. Linear plasmid vector for cloning of repetitive or unstable sequences in Escherichia coli. Nucleic Acids Research 38: e88.
-
Nucleic Acids Research
, vol.38
-
-
Godiska, R.1
Mead, D.2
Dhodda, V.3
Wu, C.4
Hochstein, R.5
Karsi, A.6
Usdin, K.7
Entezam, A.8
Ravin, N.9
-
17
-
-
1842584772
-
Chromatin loops are selectively anchored using scaffold/matrix attachment regions
-
Heng HHQ, Goetze S, Ye CJ, Liu G, Stevens JB, Bremer SW, Bode J, Wykes SM, Krawetz SA. 2004. Chromatin loops are selectively anchored using scaffold/matrix attachment regions. Journal of Cell Science 117: 999-1008.
-
(2004)
Journal of Cell Science
, vol.117
, pp. 999-1008
-
-
Hhq, H.1
Goetze, S.2
Ye, C.J.3
Liu, G.4
Stevens, J.B.5
Bremer, S.W.6
Bode, J.7
Wykes, S.M.8
Krawetz, S.A.9
-
20
-
-
77956550525
-
Nuclear matrix proteome analysis of Drosophila melanogaster
-
Kallapagoudar S, Varma P, Pathak RU, SenthilKumar, Mishra RK. 2010. Nuclear matrix proteome analysis of Drosophila melanogaster. Molecular and Cellular Proteomics 9(9): 2005-2018.
-
(2010)
Molecular and Cellular Proteomics
, vol.9
, Issue.9
, pp. 2005-2018
-
-
Kallapagoudar, S.1
Varma, P.2
Pathak, R.U.3
Senthilkumar Mishra, R.K.4
-
21
-
-
0012341115
-
The transposable elements of the Drosophila melanogaster euchromatin: A genomics perspective
-
Kaminker JS, Bergman CM, Kronmiller B, Carlson J, Svirskas R, Patel S, Frise E, Wheeler DA, Lewis SE, Rubin GM, Ashburner M, Celnikar SE. 2002. The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective. Genome Biology 3(12): RESEARCH0084.
-
(2002)
Genome Biology
, vol.3
, Issue.12
-
-
Kaminker, J.S.1
Bergman, C.M.2
Kronmiller, B.3
Carlson, J.4
Svirskas, R.5
Patel, S.6
Frise, E.7
Wheeler, D.A.8
Lewis, S.E.9
Rubin, G.M.10
Ashburner, M.11
Celnikar, S.E.12
-
22
-
-
1542513556
-
Mobile elements: Drivers of genome evolution
-
Kazazian Jr HH. 2004. Mobile elements: drivers of genome evolution. Science 303: 1626-1632.
-
(2004)
Science
, vol.303
, pp. 1626-1632
-
-
Kazazian Jr., H.H.1
-
23
-
-
33846283384
-
Dynamic genome architecture in the nuclear space: Reguation of gene expression in three dimensions
-
Lanctot C, Cheutin T, Cremer M, Cavalli G, Cremer T. 2007. Dynamic genome architecture in the nuclear space: reguation of gene expression in three dimensions. Nature Reviews: Genetics 8(2): 104-115.
-
(2007)
Nature Reviews: Genetics
, vol.8
, Issue.2
, pp. 104-115
-
-
Lanctot, C.1
Cheutin, T.2
Cremer, M.3
Cavalli, G.4
Cremer, T.5
-
24
-
-
0022762408
-
In vivo loss of supercoiled DNA carrying a palindromic sequence
-
Leach D, Lindsay J.1986. In vivo loss of supercoiled DNA carrying a palindromic sequence. Molecular and General Genetics 204(2): 322-327.
-
(1986)
Molecular and General Genetics
, vol.204
, Issue.2
, pp. 322-327
-
-
Leach, D.1
Lindsay, J.2
-
25
-
-
0021675784
-
Organization of higher order chromatin loops: Specific DNA attachment sites on nuclear scaffold
-
Mirkovitch J, Mirault ME, Laemmli UK. 1984. Organization of higher order chromatin loops: specific DNA attachment sites on nuclear scaffold. Cell 39(1): 223-232.
-
(1984)
Cell
, vol.39
, Issue.1
, pp. 223-232
-
-
Mirkovitch, J.1
Mirault, M.E.2
Laemmli, U.K.3
-
26
-
-
0031915974
-
A nuclear matrix/scaffold attachment region co-localizes with the gypsy retrotransposon insulator sequence
-
Nabirochkin S, Ossokina M, Heidmann T. 1998. A nuclear matrix/scaffold attachment region co-localizes with the gypsy retrotransposon insulator sequence. The Journal of Biological Chemistry 273(4): 2473-2479.
-
(1998)
The Journal of Biological Chemistry
, vol.273
, Issue.4
, pp. 2473-2479
-
-
Nabirochkin, S.1
Ossokina, M.2
Heidmann, T.3
-
27
-
-
0035110880
-
Experimental observations of a nuclear matrix
-
Nickerson J. 2001. Experimental observations of a nuclear matrix. Journal of Cell Science 114: 463-474.
-
(2001)
Journal of Cell Science
, vol.114
, pp. 463-474
-
-
Nickerson, J.1
-
28
-
-
34347335677
-
Boundary elementassociated factor 32B connects chromatin domains to the nuclear matrix
-
Pathak RU, Rangaraj N, Kallappagoudar S, Mishra K, Mishra RK. Boundary elementassociated factor 32B connects chromatin domains to the nuclear matrix. Molecular and Cellular Biology 27(13): 4796-4806.
-
Molecular and Cellular Biology
, vol.27
, Issue.13
, pp. 4796-4806
-
-
Pathak, R.U.1
Rangaraj, N.2
Kallappagoudar, S.3
Mishra, K.4
Mishra, R.K.5
-
29
-
-
67549119096
-
CTCF: Master weaver of the genome
-
Phillips JE, Corces VG. 2009. CTCF: master weaver of the genome. Cell 137(7): 1194-1211.
-
(2009)
Cell
, vol.137
, Issue.7
, pp. 1194-1211
-
-
Phillips, J.E.1
Corces, V.G.2
-
30
-
-
34248211598
-
Chromatin domains and regulation of transcription
-
Razin SV, Larovaia OV, Sjakste N, Sjakste T, Bagdoniene L, Rynditch AV, Eivazova ER, Lipinski M, Vassetzky YS. 2007. Chromatin domains and regulation of transcription. Journal of Molecular Biology 369: 597-607.
-
(2007)
Journal of Molecular Biology
, vol.369
, pp. 597-607
-
-
Razin, S.V.1
Larovaia, O.V.2
Sjakste, N.3
Sjakste, T.4
Bagdoniene, L.5
Rynditch, A.V.6
Eivazova, E.R.7
Lipinski, M.8
Vassetzky, Y.S.9
-
31
-
-
35848952522
-
Gene regulation through nuclear organization
-
Sexton T, Schober H, Fraser P, Gasser SM. 2007. Gene regulation through nuclear organization. Nature Structural and Molecular Biology 14(11): 1049-1055.
-
(2007)
Nature Structural and Molecular Biology
, vol.14
, Issue.11
, pp. 1049-1055
-
-
Sexton, T.1
Schober, H.2
Fraser, P.3
Gasser, S.M.4
-
32
-
-
65949089044
-
Discovering matrix attachment regions (MARs) in genomic databases
-
Singh GB. 2000. Discovering matrix attachment regions (MARs) in genomic databases. SIGKDD explorations 1: 39-45.
-
(2000)
SIGKDD Explorations
, vol.1
, pp. 39-45
-
-
Singh, G.B.1
-
33
-
-
0003328368
-
Evidence for large domains of similarly expressed genes in the Drosophila genome
-
Spellman PT, Rubin GM. 2002. Evidence for large domains of similarly expressed genes in the Drosophila genome. Journal of Biology 1: 1-8.
-
(2002)
Journal of Biology
, vol.1
, pp. 1-8
-
-
Spellman, P.T.1
Rubin, G.M.2
-
34
-
-
84861540628
-
Chromatin domain boundary element search tool for Drosophila
-
Srinivasan A and Mishra RK. 2011. Chromatin domain boundary element search tool for Drosophila. Nucleic Acids Research 40(10): 4385-4395.
-
(2011)
Nucleic Acids Research
, vol.40
, Issue.10
, pp. 4385-4395
-
-
Srinivasan, A.1
Mishra, R.K.2
-
35
-
-
41649088383
-
Regulation of mammalian gene expression by retroelements and noncoding tandem repeats
-
Tomilin NV. 2008. Regulation of mammalian gene expression by retroelements and noncoding tandem repeats. Bioessays 30(4): 338-348.
-
(2008)
Bioessays
, vol.30
, Issue.4
, pp. 338-348
-
-
Tomilin, N.V.1
-
36
-
-
80054808420
-
Dynamics of nuclear matrix proteome during embryonic development in Drosophila melanogaster
-
Varma P, Mishra RK. 2011. Dynamics of nuclear matrix proteome during embryonic development in Drosophila melanogaster. Journal of Biosciences 36(3): 439-459.
-
(2011)
Journal of Biosciences
, vol.36
, Issue.3
, pp. 439-459
-
-
Varma, P.1
Mishra, R.K.2
-
37
-
-
0035793429
-
Analysis of sequence dependent curvature in matrix attachment regions
-
Yamamura J, Nomura K. 2001. Analysis of sequence dependent curvature in matrix attachment regions. FEBS Letters 489(2-3): 166-170.
-
(2001)
FEBS Letters
, vol.489
, Issue.2-3
, pp. 166-170
-
-
Yamamura, J.1
Nomura, K.2
-
38
-
-
2942537834
-
The 5'- HS4 chicken beta-globin insulator is a CTCFdependent nuclear-matrix associated element
-
Yusufzai TM, Felsenfeld G. 2004. The 5'- HS4 chicken beta-globin insulator is a CTCFdependent nuclear-matrix associated element. Proceedings of the National Academy of Sciences USA 101(23): 8620-8624
-
(2004)
Proceedings of the National Academy of Sciences USA
, vol.101
, Issue.23
, pp. 8620-8624
-
-
Yusufzai, T.M.1
Felsenfeld, G.2
|