-
1
-
-
0029030020
-
Xer site-specific recombination in vitro
-
Arciszewska LK, Sherratt DJ (1995) Xer site-specific recombination in vitro. EMBO J 14: 2112-2120
-
(1995)
EMBO J
, vol.14
, pp. 2112-2120
-
-
Arciszewska, L.K.1
Sherratt, D.J.2
-
2
-
-
85158033913
-
Mobile introns: Pathways and proteins
-
Craig NL, Craigie R, Gellert M, Lambowitz AM eds, pp, Washington, DC: ASM Press
-
Belfort M, Derbyshire V, Parker MM, Cousineau B, Lambowitz AM (2002) Mobile introns: pathways and proteins. In Mobile DNA II, Craig NL, Craigie R, Gellert M, Lambowitz AM (eds), pp 761-783. Washington, DC: ASM Press
-
(2002)
Mobile DNA II
, pp. 761-783
-
-
Belfort, M.1
Derbyshire, V.2
Parker, M.M.3
Cousineau, B.4
Lambowitz, A.M.5
-
3
-
-
67649839463
-
-
Biswas T, Aihara H, Radman-Livaja M, Filman D, Landy A
-
Biswas T, Aihara H, Radman-Livaja M, Filman D, Landy A,
-
-
-
-
4
-
-
21344466779
-
A structural basis for allosteric control of DNA recombination by lambda integrase
-
Ellenberger T (2005) A structural basis for allosteric control of DNA recombination by lambda integrase. Nature 435: 1059-1066
-
(2005)
Nature
, vol.435
, pp. 1059-1066
-
-
Ellenberger, T.1
-
5
-
-
0031874849
-
Improved properties of FLP recombinase evolved by cycling mutagenesis
-
Buchholz F, Angrand PO, Stewart AF (1998) Improved properties of FLP recombinase evolved by cycling mutagenesis. Nat Biotechnol 16: 657-662
-
(1998)
Nat Biotechnol
, vol.16
, pp. 657-662
-
-
Buchholz, F.1
Angrand, P.O.2
Stewart, A.F.3
-
6
-
-
0020956508
-
RNA splicing: Three themes with variations
-
Cech TR (1983) RNA splicing: three themes with variations. Cell 34: 713-716
-
(1983)
Cell
, vol.34
, pp. 713-716
-
-
Cech, T.R.1
-
7
-
-
27444436381
-
Hairpin telomeres and genome plasticity in Borrelia: All mixed up in the end
-
Chaconas G (2005) Hairpin telomeres and genome plasticity in Borrelia: all mixed up in the end. Mol Microbiol 58: 625-635
-
(2005)
Mol Microbiol
, vol.58
, pp. 625-635
-
-
Chaconas, G.1
-
8
-
-
0026651559
-
DNA cleavage in trans by the active site tyrosine during Flp recombination: Switching protein partners before exchanging strands
-
Chen JW, Lee J, Jayaram M (1992) DNA cleavage in trans by the active site tyrosine during Flp recombination: switching protein partners before exchanging strands. Cell 69: 647-658
-
(1992)
Cell
, vol.69
, pp. 647-658
-
-
Chen, J.W.1
Lee, J.2
Jayaram, M.3
-
9
-
-
0027193305
-
Tests for the fractional activesite model in Flp site-specific recombination. Assembly of a functional recombination complex in half-site and full-site strand transfer
-
Chen JW, Yang SH, Jayaram M (1993) Tests for the fractional activesite model in Flp site-specific recombination. Assembly of a functional recombination complex in half-site and full-site strand transfer. J Biol Chem 268: 14417-14425
-
(1993)
J Biol Chem
, vol.268
, pp. 14417-14425
-
-
Chen, J.W.1
Yang, S.H.2
Jayaram, M.3
-
10
-
-
0033637213
-
Crystal structure of a Flp recombinase-Holliday junction complex: Assembly of an active oligomer by helix swapping
-
Chen Y, Narendra U, Iype LE, Cox MM, Rice PA (2000) Crystal structure of a Flp recombinase-Holliday junction complex: assembly of an active oligomer by helix swapping. Mol Cell 6: 885-897
-
(2000)
Mol Cell
, vol.6
, pp. 885-897
-
-
Chen, Y.1
Narendra, U.2
Iype, L.E.3
Cox, M.M.4
Rice, P.A.5
-
11
-
-
0042090348
-
The role of the conserved Trp330 in Flpmediated recombination: Functional and structural analysis
-
Chen Y, Rice PA (2003) The role of the conserved Trp330 in Flpmediated recombination: functional and structural analysis. J Biol Chem 278: 24800-24807
-
(2003)
J Biol Chem
, vol.278
, pp. 24800-24807
-
-
Chen, Y.1
Rice, P.A.2
-
12
-
-
0032549763
-
Conservation of structure and mechanism between eukaryotic topoisomerase I and site-specific recombinases
-
Cheng C, Kussie P, Pavletich N, Shuman S (1998) Conservation of structure and mechanism between eukaryotic topoisomerase I and site-specific recombinases. Cell 92: 841-850
-
(1998)
Cell
, vol.92
, pp. 841-850
-
-
Cheng, C.1
Kussie, P.2
Pavletich, N.3
Shuman, S.4
-
13
-
-
0037436326
-
Structural plasticity of the Flp-Holliday junction complex
-
Conway AB, Chen Y, Rice PA (2003) Structural plasticity of the Flp-Holliday junction complex. J Mol Biol 326: 425-434
-
(2003)
J Mol Biol
, vol.326
, pp. 425-434
-
-
Conway, A.B.1
Chen, Y.2
Rice, P.A.3
-
14
-
-
85158027421
-
Mobile DNA: An introduction
-
Craig NL, Craigie R, Gellert M, Lambowitz AM eds, pp, Washington, DC: ASM Press
-
Craig NL (2002) Mobile DNA: an introduction. In Mobile DNA II, Craig NL, Craigie R, Gellert M, Lambowitz AM (eds), pp 3-11. Washington, DC: ASM Press
-
(2002)
Mobile DNA II
, pp. 3-11
-
-
Craig, N.L.1
-
15
-
-
0030816550
-
The integrase family of tyrosine recombinases: Evolution of a conserved active site domain
-
Esposito D, Scocca JJ (1997) The integrase family of tyrosine recombinases: evolution of a conserved active site domain. Nucl Acids Res 25: 3605-3614
-
(1997)
Nucl Acids Res
, vol.25
, pp. 3605-3614
-
-
Esposito, D.1
Scocca, J.J.2
-
16
-
-
0022596135
-
Copy number amplification of the 2 micron circle plasmid of Saccharomyces cerevisiae
-
Futcher AB (1986) Copy number amplification of the 2 micron circle plasmid of Saccharomyces cerevisiae. J Theor Biol 119: 197-204
-
(1986)
J Theor Biol
, vol.119
, pp. 197-204
-
-
Futcher, A.B.1
-
17
-
-
0030886293
-
Structure of Cre recombinase complexed with DNA in a site-specific recombination synapse
-
Guo F, Gopaul DN, Van Duyne GD (1997) Structure of Cre recombinase complexed with DNA in a site-specific recombination synapse. Nature 389: 40-46
-
(1997)
Nature
, vol.389
, pp. 40-46
-
-
Guo, F.1
Gopaul, D.N.2
Van Duyne, G.D.3
-
18
-
-
0033382191
-
Reciprocal control of catalysis by the tyrosine recombinases XerC and XerD: An enzymatic switch in site-specific recombination
-
Hallet B, Arciszewska LK, Sherratt DJ (1999) Reciprocal control of catalysis by the tyrosine recombinases XerC and XerD: an enzymatic switch in site-specific recombination. Mol Cell 4: 949-959
-
(1999)
Mol Cell
, vol.4
, pp. 949-959
-
-
Hallet, B.1
Arciszewska, L.K.2
Sherratt, D.J.3
-
19
-
-
23644448115
-
Receipt of the Cterminal tail from a neighboring lambda Int protomer allosterically stimulates Holliday junction resolution
-
Hazelbaker D, Radman-Livaja M, Landy A (2005) Receipt of the Cterminal tail from a neighboring lambda Int protomer allosterically stimulates Holliday junction resolution. J Mol Biol 351: 948-955
-
(2005)
J Mol Biol
, vol.351
, pp. 948-955
-
-
Hazelbaker, D.1
Radman-Livaja, M.2
Landy, A.3
-
20
-
-
0030904786
-
Molecular organization in site-specific recombination: The catalytic domain of bacteriophage HP1 integrase at 2.7A° resolution
-
Hickman AB, Waninger S, Scocca JJ, Dyda F (1997) Molecular organization in site-specific recombination: the catalytic domain of bacteriophage HP1 integrase at 2.7A° resolution. Cell 89: 227-237
-
(1997)
Cell
, vol.89
, pp. 227-237
-
-
Hickman, A.B.1
Waninger, S.2
Scocca, J.J.3
Dyda, F.4
-
21
-
-
4143105544
-
Site-specific recombination and partitioning systems in the stable high copy propagation of the 2-micron yeast plasmid
-
Moldave K ed, Academic Press
-
Jayaram M, Mehta S, Uzri D, Voziyanov Y, Velmurugan S (2004) Site-specific recombination and partitioning systems in the stable high copy propagation of the 2-micron yeast plasmid. In Progress in Nucleic Acid Research and Molecular Biology, Moldave K (ed), Vol. 77, pp 127-172. Academic Press
-
(2004)
Progress in Nucleic Acid Research and Molecular Biology
, vol.77
, pp. 127-172
-
-
Jayaram, M.1
Mehta, S.2
Uzri, D.3
Voziyanov, Y.4
Velmurugan, S.5
-
22
-
-
85158066964
-
Site-specific recombination by the Flp protein of Saccharomyces cerevisiae
-
Craig NL, Craigie R, Gellert M, Lambowitz AM eds, pp, Washington, DC: ASM Press
-
Jayaram M, Tribble G, Grainge I (2002) Site-specific recombination by the Flp protein of Saccharomyces cerevisiae. In Mobile DNA II, Craig NL, Craigie R, Gellert M, Lambowitz AM (eds), pp 192-218. Washington, DC: ASM Press
-
(2002)
Mobile DNA II
, pp. 192-218
-
-
Jayaram, M.1
Tribble, G.2
Grainge, I.3
-
23
-
-
0027277026
-
Sequence-specific cleavage of DNA via nucleophilic attack of hydrogen peroxide, assisted by Flp recombinase
-
Kimball AS, Lee J, Jayaram M, Tullius TD (1993) Sequence-specific cleavage of DNA via nucleophilic attack of hydrogen peroxide, assisted by Flp recombinase. Biochemistry 32: 4698-4701
-
(1993)
Biochemistry
, vol.32
, pp. 4698-4701
-
-
Kimball, A.S.1
Lee, J.2
Jayaram, M.3
Tullius, T.D.4
-
24
-
-
0033634688
-
Catalytic mechanism of DNA topoisomerase IB
-
Krogh BO, Shuman S (2000) Catalytic mechanism of DNA topoisomerase IB. Mol Cell 5: 1035-1041
-
(2000)
Mol Cell
, vol.5
, pp. 1035-1041
-
-
Krogh, B.O.1
Shuman, S.2
-
25
-
-
0027248517
-
Mechanism of site-specific recombination. Logic of assembling recombinase catalytic site from fractional active sites
-
Lee J, Jayaram M (1993) Mechanism of site-specific recombination. Logic of assembling recombinase catalytic site from fractional active sites. J Biol Chem 268: 17564-17570
-
(1993)
J Biol Chem
, vol.268
, pp. 17564-17570
-
-
Lee, J.1
Jayaram, M.2
-
26
-
-
0028906487
-
Role of partner homology in DNA recombination
-
Lee J, Jayaram M (1995) Role of partner homology in DNA recombination. J Biol Chem 270: 4042-4052
-
(1995)
J Biol Chem
, vol.270
, pp. 4042-4052
-
-
Lee, J.1
Jayaram, M.2
-
27
-
-
0030886990
-
A tetramer of the Flp recombinase silences the trimers within it during resolution of a Holliday junction substrate
-
Lee J, Jayaram M (1997) A tetramer of the Flp recombinase silences the trimers within it during resolution of a Holliday junction substrate. Genes Dev 11: 2438-2447
-
(1997)
Genes Dev
, vol.11
, pp. 2438-2447
-
-
Lee, J.1
Jayaram, M.2
-
28
-
-
0029993536
-
Assembly and orientation of Flp recombinase active sites on two-, three- and four-armed DNA substrates: Implications for a recombination mechanism
-
Lee J, Whang I, Jayaram M (1996) Assembly and orientation of Flp recombinase active sites on two-, three- and four-armed DNA substrates: implications for a recombination mechanism. J Mol Biol 257: 532-549
-
(1996)
J Mol Biol
, vol.257
, pp. 532-549
-
-
Lee, J.1
Whang, I.2
Jayaram, M.3
-
29
-
-
33947316369
-
Unveiling hidden catalytic contributions of the conserved His/ Trp-III in tyrosine recombinases: Assembly of a novel active site in Flp recombinase harboring alanine at this position
-
Ma CH, Kwiatek A, Bolusani S, Voziyanov Y, Jayaram M (2007) Unveiling hidden catalytic contributions of the conserved His/ Trp-III in tyrosine recombinases: assembly of a novel active site in Flp recombinase harboring alanine at this position. J Mol Biol 368: 183-196
-
(2007)
J Mol Biol
, vol.368
, pp. 183-196
-
-
Ma, C.H.1
Kwiatek, A.2
Bolusani, S.3
Voziyanov, Y.4
Jayaram, M.5
-
30
-
-
0023664818
-
Purification of the FLP site-specific recombinase by affinity chromatography and re-examination of basic properties of the system
-
Meyer-Leon L, Gates CA, Attwood JM, Wood EA, Cox MM (1987) Purification of the FLP site-specific recombinase by affinity chromatography and re-examination of basic properties of the system. Nucleic Acids Res 15: 6469-6488
-
(1987)
Nucleic Acids Res
, vol.15
, pp. 6469-6488
-
-
Meyer-Leon, L.1
Gates, C.A.2
Attwood, J.M.3
Wood, E.A.4
Cox, M.M.5
-
31
-
-
0030628279
-
Polynucleotidyl transfer reactions in site-specific DNA recombination
-
Mizuuchi K (1997) Polynucleotidyl transfer reactions in site-specific DNA recombination. Genes Cells 2: 1-12
-
(1997)
Genes Cells
, vol.2
, pp. 1-12
-
-
Mizuuchi, K.1
-
32
-
-
0038659759
-
Similarities and differences among 105 members of the Int family of site-specific recombinases
-
Nunes-Duby SE, Kwon HJ, Tirumalai RS, Ellenberger T, Landy A (1998) Similarities and differences among 105 members of the Int family of site-specific recombinases. Nucleic Acids Res 26: 391-406
-
(1998)
Nucleic Acids Res
, vol.26
, pp. 391-406
-
-
Nunes-Duby, S.E.1
Kwon, H.J.2
Tirumalai, R.S.3
Ellenberger, T.4
Landy, A.5
-
33
-
-
0028168871
-
Lambda integrase cleaves DNA in cis
-
Nunes-Duby SE, Tirumalai RS, Dorgai L, Yagil E, Weisberg RA, Landy A (1994) Lambda integrase cleaves DNA in cis. EMBO J 13: 4421-4430
-
(1994)
EMBO J
, vol.13
, pp. 4421-4430
-
-
Nunes-Duby, S.E.1
Tirumalai, R.S.2
Dorgai, L.3
Yagil, E.4
Weisberg, R.A.5
Landy, A.6
-
34
-
-
0023708318
-
Step-arrest mutants of FLP recombinase: Implications for the catalytic mechanism of DNA recombination
-
Parsons RL, Prasad PV, Harshey RM, Jayaram M (1988) Step-arrest mutants of FLP recombinase: implications for the catalytic mechanism of DNA recombination. Mol Cell Biol 8: 3303-3310
-
(1988)
Mol Cell Biol
, vol.8
, pp. 3303-3310
-
-
Parsons, R.L.1
Prasad, P.V.2
Harshey, R.M.3
Jayaram, M.4
-
35
-
-
33746410027
-
Structural basis for specificity in the poxvirus topoisomerase
-
Perry K, Hwang Y, Bushman FD, Van Duyne GD (2006) Structural basis for specificity in the poxvirus topoisomerase. Mol Cell 23: 343-354
-
(2006)
Mol Cell
, vol.23
, pp. 343-354
-
-
Perry, K.1
Hwang, Y.2
Bushman, F.D.3
Van Duyne, G.D.4
-
36
-
-
0029166595
-
Asymmetry in active complexes of FLP recombinase
-
Qian XH, Cox MM (1995) Asymmetry in active complexes of FLP recombinase. Genes Dev 9: 2053-2064
-
(1995)
Genes Dev
, vol.9
, pp. 2053-2064
-
-
Qian, X.H.1
Cox, M.M.2
-
37
-
-
0032489634
-
Crystal structures of human topoisomerase I in covalent and noncovalent complexes with DNA
-
Redinbo MR, Stewart L, Kuhn P, Champoux JJ, Hol WG (1998) Crystal structures of human topoisomerase I in covalent and noncovalent complexes with DNA. Science 279: 1504-1513
-
(1998)
Science
, vol.279
, pp. 1504-1513
-
-
Redinbo, M.R.1
Stewart, L.2
Kuhn, P.3
Champoux, J.J.4
Hol, W.G.5
-
38
-
-
0023431265
-
Roles of the 2 micron gene products in stable maintenance of the 2 micron plasmid of Saccharomyces cerevisiae
-
Reynolds AE, Murray AW, Szostak JW (1987) Roles of the 2 micron gene products in stable maintenance of the 2 micron plasmid of Saccharomyces cerevisiae. Mol Cell Biol 7: 3566-3573
-
(1987)
Mol Cell Biol
, vol.7
, pp. 3566-3573
-
-
Reynolds, A.E.1
Murray, A.W.2
Szostak, J.W.3
-
39
-
-
85104615966
-
Theme and variation in tyrosine recombinases: Structure of a Flp-DNA complex
-
Craig NL, Craigie R, Gellert M, Lambowitz AM eds, pp, Wahington, DC: ASM Press
-
Rice PA (2002) Theme and variation in tyrosine recombinases: structure of a Flp-DNA complex. In Mobile DNA II, Craig NL, Craigie R, Gellert M, Lambowitz AM (eds), pp 219-229. Wahington, DC: ASM Press
-
(2002)
Mobile DNA II
, pp. 219-229
-
-
Rice, P.A.1
-
40
-
-
0024292652
-
DNA recognition by the FLP recombinase of the yeast 2 micron plasmid. A mutational analysis of the FLP binding site
-
Senecoff JF, Rossmeissl PJ, Cox MM (1988) DNA recognition by the FLP recombinase of the yeast 2 micron plasmid. A mutational analysis of the FLP binding site. J Mol Biol 201: 405-421
-
(1988)
J Mol Biol
, vol.201
, pp. 405-421
-
-
Senecoff, J.F.1
Rossmeissl, P.J.2
Cox, M.M.3
-
41
-
-
0043127392
-
Guarding the genome: Electrostatic repulsion of water by DNA suppresses a potent nuclease activity of topoisomerase IB
-
Tian L, Claeboe CD, Hecht SM, Shuman S (2003) Guarding the genome: electrostatic repulsion of water by DNA suppresses a potent nuclease activity of topoisomerase IB. Mol Cell 12: 199-208
-
(2003)
Mol Cell
, vol.12
, pp. 199-208
-
-
Tian, L.1
Claeboe, C.D.2
Hecht, S.M.3
Shuman, S.4
-
42
-
-
17044399694
-
Mechanistic plasticity of DNA topoisomerase IB: Phosphate electrostatics dictate the need for a catalytic arginine
-
Tian L, Claeboe CD, Hecht SM, Shuman S (2005) Mechanistic plasticity of DNA topoisomerase IB: phosphate electrostatics dictate the need for a catalytic arginine. Structure 13: 513-520
-
(2005)
Structure
, vol.13
, pp. 513-520
-
-
Tian, L.1
Claeboe, C.D.2
Hecht, S.M.3
Shuman, S.4
-
43
-
-
85157962287
-
A structural view of tyrosine recombinase site-specific recombination
-
Craig NL, Craigie R, Gellert M, Lambowitz AM eds, pp, Washington, DC: ASM Press
-
Van Duyne GD (2002) A structural view of tyrosine recombinase site-specific recombination. In Mobile DNA II, Craig NL, Craigie R, Gellert M, Lambowitz AM (eds), pp 93-117. Washington, DC: ASM Press
-
(2002)
Mobile DNA II
, pp. 93-117
-
-
Van Duyne, G.D.1
-
44
-
-
0035805515
-
Uncoupling of 30-phosphatase and 50- kinase functions in budding yeast. Characterization of Saccharomyces cerevisiae DNA 30-phosphatase (TPP1)
-
Vance JR, Wilson TE (2001) Uncoupling of 30-phosphatase and 50- kinase functions in budding yeast. Characterization of Saccharomyces cerevisiae DNA 30-phosphatase (TPP1). J Biol Chem 276: 15073-15081
-
(2001)
J Biol Chem
, vol.276
, pp. 15073-15081
-
-
Vance, J.R.1
Wilson, T.E.2
-
45
-
-
0022497169
-
Site-specific recombination promotes plasmid amplification in yeast
-
Volkert FC, Broach JR (1986) Site-specific recombination promotes plasmid amplification in yeast. Cell 46: 541-550
-
(1986)
Cell
, vol.46
, pp. 541-550
-
-
Volkert, F.C.1
Broach, J.R.2
-
46
-
-
33847079942
-
Identification of a potential general acid/base in the reversible phosphoryl transfer reactions catalyzed by tyrosine recombinases: Flp H305
-
Whiteson KL, Chen Y, Chopra N, Raymond AC, Rice PA (2007) Identification of a potential general acid/base in the reversible phosphoryl transfer reactions catalyzed by tyrosine recombinases: Flp H305. Chem Biol 14: 121-129
-
(2007)
Chem Biol
, vol.14
, pp. 121-129
-
-
Whiteson, K.L.1
Chen, Y.2
Chopra, N.3
Raymond, A.C.4
Rice, P.A.5
-
47
-
-
30044445827
-
Consequences of P-chirality in chimeric 20-O-methyloligoribonucleotides with stereoregular methylphosphonothioate linkages
-
Wozniak LA, Janicka M, Bukowiecka-Matusiak M (2005) Consequences of P-chirality in chimeric 20-O-methyloligoribonucleotides with stereoregular methylphosphonothioate linkages. Euro J Organic Chem 24: 5189-5197
-
(2005)
Euro J Organic Chem
, vol.24
, pp. 5189-5197
-
-
Wozniak, L.A.1
Janicka, M.2
Bukowiecka-Matusiak, M.3
-
48
-
-
33745399036
-
One-Pot synthesis of dinucleoside(30,50)-methylphosphonothioates and their seleno congeners via the phosphonotriazolidite approach
-
Wozniak LA, Bukowiecka-Matusiak M, Gora M, Stec WJ (2006) One-Pot synthesis of dinucleoside(30,50)-methylphosphonothioates and their seleno congeners via the phosphonotriazolidite approach. Synlett 9: 1331-1334
-
(2006)
Synlett
, vol.9
, pp. 1331-1334
-
-
Wozniak, L.A.1
Bukowiecka-Matusiak, M.2
Gora, M.3
Stec, W.J.4
-
49
-
-
0032037326
-
Unveiling two distinct ribonuclease activities and a topoisomerase activity in a site-specific DNA recombinase
-
Xu C-J, Grainge I, Lee J, Harshey RM, Jayaram M (1998) Unveiling two distinct ribonuclease activities and a topoisomerase activity in a site-specific DNA recombinase. Mol Cell 1: 729-739
-
(1998)
Mol Cell
, vol.1
, pp. 729-739
-
-
Xu, C.-J.1
Grainge, I.2
Lee, J.3
Harshey, R.M.4
Jayaram, M.5
|