Screening for genes coding for putative antitumor compounds, antimicrobial and enzymatic activities from haloalkalitolerant and haloalkaliphilic bacteria strains of Algerian Sahara soils

BioMed Research International

Volumn 2014, Issue , 2014, Pages

  Selama, Okba ^a   Amos, Gregory C A ^b   Djenane, Zahia ^a   Borsetto, Chiara ^b   Laidi, Rabah Forar ^c   Porter, David ^b   Nateche, Farida ^a   Wellington, Elizabeth M H ^b   Hacène, Hocine ^a  

^a UNIVERSITY OF SCIENCES AND TECHNOLOGY HOUARI BOUMEDIENE   (Algeria)

^b UNIVERSITY OF WARWICK   (United Kingdom)

^c Ecole Normale Superieure de Kouba   (Algeria)

Author keywords

[No Author keywords available]

Indexed keywords

ANTIINFECTIVE AGENT; ANTINEOPLASTIC AGENT; SODIUM CHLORIDE; ANTIFUNGAL AGENT; PRIMER DNA;

ACTINOBACTERIA; ACTINOPOLYSPORA; ANTIBACTERIAL ACTIVITY; ANTIFUNGAL ACTIVITY; ANTINEOPLASTIC ACTIVITY; ARTICLE; BACILLUS; BACILLUS MOJAVENSIS; BACTERIAL GROWTH; BACTERIAL STRAIN; BACTERIUM ISOLATE; BACTERIUM ISOLATION; BIODIVERSITY; DESERT; ENZYME ACTIVITY; GENETIC CODE; GENETIC SCREENING; HALOALKALIPHILIC BACTERIA; HALOALKALITOLERANT BACTERIUM; MARINOCOCCUS; MICROCOCCUS LUTEUS; NOCARDIA; NONHUMAN; NUCLEOTIDE SEQUENCE; PSEUDONOCARDIACEAE; SACCHAROMYCES CEREVISIAE; STREPTOMYCES; THERMOACTINOMYCES; AFRICA; ALGERIA; BACTERIUM; BIOTECHNOLOGY; CHEMISTRY; DNA SEQUENCE; DRUG EFFECTS; GEOGRAPHY; MICROBIOLOGY; MOLECULAR GENETICS; POLYMERASE CHAIN REACTION;

AFRICA, NORTHERN; ALGERIA; ANTI-INFECTIVE AGENTS; ANTIFUNGAL AGENTS; ANTINEOPLASTIC AGENTS; BACTERIA; BIOTECHNOLOGY; DNA PRIMERS; GEOGRAPHY; MOLECULAR SEQUENCE DATA; NOCARDIA; POLYMERASE CHAIN REACTION; SACCHAROMYCES CEREVISIAE; SEQUENCE ANALYSIS, DNA; SOIL MICROBIOLOGY;

EID: 84902179951     PISSN: 23146133     EISSN: 23146141     Source Type: Journal    
DOI: 10.1155/2014/317524     Document Type: Article

References (60)

1. Podar M., Reysenbach A. L., New opportunities revealed by biotechnological explorations of extremophiles. Current Opinion in Biotechnology 2006 17 3 250 255 2-s2.0-33744928103 10.1016/j.copbio.2006.05.002 (Pubitemid 43850259)
2. Subramaniam S., Productivity and attrition: key challenges for biotech and pharma. Drug Discovery Today 2003 8 12 513 515 2-s2.0-0037785182 10.1016/S1359-6446(03)02658-8 (Pubitemid 36773663)
3. Lam K. S., New aspects of natural products in drug discovery. Trends in Microbiology 2007 15 6 279 289 2-s2.0-34249811180 10.1016/j.tim.2007.04.001 (Pubitemid 46856162)
4. Perić-Concha N., Long P. F., Mining the microbial metabolome: a new frontier for natural product lead discovery. Drug Discovery Today 2003 8 23 1078 1084 2-s2.0-1642453829 10.1016/S1359-6446(03)02901-5 (Pubitemid 38124473)
5. Spížek J., Novotná J., Řezanka T., Demain A. L., Do we need new antibiotics? The search for new targets and new compounds. Journal of Industrial Microbiology and Biotechnology 2010 37 12 1241 1248 2-s2.0-78651269003 10.1007/s10295-010-0849-8
6. Rainey F. A., Oren A., Rainey F. A., Oren A., Extremophile microorganisms and the methods to handle them. Extremophiles Methods in Microbiology 2006 35 London, UK Academic Press 1 25
7. Ma Y., Galinski E. A., Grant W. D., Oren A., Ventosa A., Halophiles 2010: life in saline environments. Applied and Environmental Microbiology 2010 76 21 6971 6981 2-s2.0-78149452539 10.1128/AEM.01868-10
8. Rothschild L. J., Mancinelli R. L., Life in extreme environments. Nature 2001 409 6823 1092 1101 2-s2.0-0035931866 10.1038/35059215 (Pubitemid 32204065)
9. El Hidri D., Guesmi A., Najjari A., Cultivation-dependant assessment, diversity, and ecology of haloalkaliphilic bacteria in arid saline systems of southern Tunisia. BioMed Research International 2013 2013 15 648141 10.1155/2013/648141
10. Soliman G. S. H., Trueper H. G., Halobacterium pharaonis sp.nov., a new, extremely haloalkaliphilic archaebacterium with low magnesium requirement. Zentralblatt für Bakteriologie Mikrobiologie und Hygiene: I. Abt. Originale C 1982 3 2 318 329 2-s2.0-0019983009 (Pubitemid 12051229)
11. Horikoshi K., Alkaliphiles 2008 Wiley Online Library
12. Horikoshi K., Alkaliphiles: some applications of their products for biotechnology. Microbiology and Molecular Biology Reviews 1999 63 4 735 750 2-s2.0-0032712358
13. Takami H., Takaki Y., Uchiyama I., Genome sequence of Oceanobacillus iheyensis isolated from the Iheya Ridge and its unexpected adaptive capabilities to extreme environments. Nucleic Acids Research 2002 30 18 3927 3935 2-s2.0-0037106449
14. Singh S. P., Extreme environments and extremophiles. E-Book: Environmental Microbiology 2006 New Delhi, India National Science Digital Library (CSIR) 1 35
15. Joshi A. A., Kanekar P. P., Kelkar A. S., Shouche Y. S., Vani A. A., Borgave S. B., Sarnaik S. S., Cultivable bacterial diversity of alkaline Lonar lake, India. Microbial Ecology 2008 55 2 163 172 2-s2.0-38649089758 10.1007/s00248-007-9264-8 (Pubitemid 351171458)
16. Hacène H., Sabaou N., Bounaga N., Lefebvre G., Screening for non-polyenic antifungal antibiotics produced by rare Actinomycetales. Microbios 1994 79 319 81 85 2-s2.0-0028190570
17. Hacene H., Kebir K., Othmane D. S., Lefebvre G., HM17, a new polyene antifungal antibiotic produced by a new strain of Spirillospora. Journal of Applied Bacteriology 1994 77 5 484 489 2-s2.0-0028020720 (Pubitemid 24339320)
18. Hacène H., Daoudi-Hamdad F., Bhatnagar T., Baratti J. C., Lefebvre G., H107, a new aminoglycoside anti-Pseudomonas antibiotic produced by a new strain of Spirillospora. Microbios 2000 102 402 69 77 2-s2.0-0346387062
19. Hacěne H., Rafa F., Chebhouni N., Boutaiba S., Bhatnagar T., Baratti J. C., Ollivier B., Biodiversity of prokaryotic microflora in El Golea Salt lake, Algerian Sahara. Journal of Arid Environments 2004 58 3 273 284 2-s2.0-2942529091 10.1016/j.jaridenv.2003.08.006 (Pubitemid 38730070)
20. Boutaiba S., Hacene H., Bidle K. A., Maupin-Furlow J. A., Microbial diversity of the hypersaline Sidi Ameur and Himalatt Salt Lakes of the Algerian Sahara. Journal of Arid Environments 2011 75 10 909 916 2-s2.0-79959784134 10.1016/j.jaridenv.2011.04.010
21. Bouanane-Darenfed A., Fardeau M. L., Grégoire P., Joseph M., Kebbouche-Gana S., Benayad T., Hacene H., Cayol J. L., Ollivier B., Caldicoprobacter algeriensis sp. nov. a new thermophilic anaerobic, xylanolytic bacterium isolated from an Algerian hot spring. Current Microbiology 2011 62 3 826 832 2-s2.0-79954446484 10.1007/s00284-010-9789-9
22. Addou A. N., Schumann P., Spröer C., Hacene H., Cayol J. L., Fardeau M. L., Melghirimyces algeriensis gen. nov., sp. nov., a member of the family Thermoactinomycetaceae, isolated from a salt lake. International Journal of Systematic and Evolutionary Microbiology 2012 62 part 7 1491 1498 10.1099/ijs.0.028985-0
23. Addou A. N., Schumann P., Spröer C., Bouanane-Darenfed A., Amarouche-Yala S., Hacene H., Cayol J. L., Fardeau M. L., Melghirimyces thermohalophilus sp. nov., a thermoactinomycete isolated from an Algerian salt lake. International Journal of Systematic and Evolutionary Microbiology 2013 63 part 5 1717 1722 10.1099/ijs.0.043760-0
24. Amziane M., Metiaz F., Darenfed-Bouanane A., Djenane Z., Selama O., Abderrahmani A., Cayol J. L., Fardeau M. L., Virgibacillus natechei sp. nov., a moderately halophilic bacterium isolated from sediment of a saline lake in southwest of Algeria. Current Microbiology 2013 66 5 462 466 10.1007/s00284-012-0300-7
25. Bhatnagar T., Boutaiba S., Hacene H., Cayol J. L., Fardeau M. L., Ollivier B., Baratti J. C., Lipolytic activity from Halobacteria: screening and hydrolase production. FEMS Microbiology Letters 2005 248 2 133 140 2-s2.0-21744450712 10.1016/j.femsle.2005.05.044 (Pubitemid 40942120)
26. Boutaiba S., Bhatnagar T., Hacene H., Mitchell D. A., Baratti J. C., Preliminary characterisation of a lipolytic activity from an extremely halophilic archaeon, Natronococcus sp. Journal of Molecular Catalysis B: Enzymatic 2006 41 1-2 21 26 2-s2.0-33745138590 10.1016/j.molcatb.2006.03.010 (Pubitemid 43903347)
27. Shirling E. B., Gottlieb D., Methods for characterization of Streptomyces species. International Journal of Systematic Bacteriology 1966 16 313 340 10.1099/00207713-16-3-313
28. Edwards U., Rogall T., Blocker H., Emde M., Bottger E. C., Isolation and direct complete nucleotide determination of entire genes. Characterization of a gene coding for 16S ribosomal RNA. Nucleic Acids Research 1989 17 19 7843 7853 2-s2.0-0024444791 (Pubitemid 19251951)
29. Decker H., Gaisser S., Pelzer S., A general approach for cloning and characterizing dNDP-glucose dehydratase genes from actinomycetes. FEMS Microbiology Letters 1996 141 195 201 10.1111/j.1574-6968.1996.tb08384.x (Pubitemid 26241853)
30. Chang F. Y., Brady S. F., Cloning and characterization of an environmental DNA-derived gene cluster that encodes the biosynthesis of the antitumor substance BE-54017. Journal of the American Chemical Society 2011 133 26 9996 9999 2-s2.0-79959894320 10.1021/ja2022653
31. Ouyang Y., Wu H., Xie L., Wang G., Dai S., Chen M., Yang K., Li X., A method to type the potential angucycline producers in actinomycetes isolated from marine sponges. International Journal of Sciences: Basic and Applied Research 2011 99 4 807 815 2-s2.0-79958183674 10.1007/s10482-011-9554-5
32. Kim O. S., Cho Y. J., Lee K., Introducing EzTaxon-e: a prokaryotic 16S rRNA Gene sequence database with phylotypes that represent uncultured species. International Journal of Systematic and Evolutionary Microbiology 2012 62 part 3 716 721 10.1099/ijs.0.038075-0
33. Tamura K., Dudley J., Nei M., Kumar S., MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Molecular Biology and Evolution 2007 24 8 1596 1599 2-s2.0-34547781750 10.1093/molbev/msm092 (Pubitemid 47236692)
34. Thompson J. D., Higgins D. G., Gibson T. J., CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Research 1994 22 22 4673 4680 2-s2.0-0027968068 (Pubitemid 24354800)
35. Tamura K., Nei M., Kumar S., Prospects for inferring very large phylogenies by using the neighbor-joining method. Proceedings of the National Academy of Sciences of the United States of America 2004 101 30 11030 11035 2-s2.0-3342920601 10.1073/pnas.0404206101 (Pubitemid 38989579)
36. Saitou N., Nei M., The neighbor-joining method: a new method for reconstructing phylogenetic trees. Molecular Biology and Evolution 1987 4 4 406 425 2-s2.0-0023375195
37. Felsenstein J., Confidence limits on phylogenies: an approach using the bootstrap. Evolution 1985 39 783 791 10.2307/2408678
38. Forar-Laidi R., Abderrahmane A., Hocine-Norya A. A., Identification and antibiosis of a novel actinomycete strain RAF-11 isolated from Iraqi soil. International Journal of Sciences: Basic and Applied Research 2013 12 1 141 159
39. Phillips E., Nash P., Lennette E. H., Balows A., Hausler W. J. Jr., Shadomy H. J., Culture media. Manual of Clinical Microbiology 1985 4th Washington, DC, USA American Society for Microbiology 1064 1065
40. Ventosa A., Mellado E., Sanchez-Porro C., Marquez M. C., Dion P., Nautiyal C. S., Halophilic and halotolerant micro-organisms from soils. Microbiology of Extreme Soils, Soil Biology 2008 13 Berlin, Germany Springer 87 115
41. Wu J., Guan T., Jiang H., Zhi X., Tang S., Dong H., Zhang L., Li W., Diversity of actinobacterial community in saline sediments from Yunnan and Xinjiang, China. Extremophiles 2009 13 4 623 632 2-s2.0-70349440592 10.1007/s00792-009-0245-3
42. Meklat A., Sabaou N., Zitouni A., Mathieu F., Lebrihi A., Isolation, taxonomy, and antagonistic properties of halophilic actinomycetes in saharan soils of algeria. Applied and Environmental Microbiology 2011 77 18 6710 6714 2-s2.0-80052800569 10.1128/AEM.00326-11
43. Pagaling E., Wang H., Venables M., Wallace A., Grant W. D., Cowan D. A., Jones B. E., Ma Y., Ventosa A., Heaphy S., Microbial biogeography of six salt lakes in Inner Mongolia, China, and a salt lake in Argentina. Applied and Environmental Microbiology 2009 75 18 5750 5760 2-s2.0-70149120519 10.1128/AEM.00040-09
44. Genomes OnLine Database. http://genomesonline.org/cgi-bin/GOLD/index.cgi
45. Hamedi J., Mohammadipanah F., Ventosa A., Systematic and biotechnological aspects of halophilic and halotolerant actinomycetes. Extremophiles 2013 17 1 13
46. Chaudhary A. K., Dhakal D., Sohng J. K., An insight into the "-omics" based engineering of streptomycetes for secondary metabolite overproduction. BioMed Research International 2013 2013 15 968518 10.1155/2013/968518
47. Metsä-Ketelä M., Halo L., Munukka E., Hakala J., Mäntsäla P., Ylihonko K., Molecular evolution of aromatic polyketides and comparative sequence analysis of polyketide ketosynthase and 16S ribosomal DNA genes from various Streptomyces species. Applied and Environmental Microbiology 2002 68 9 4472 4479 2-s2.0-0036731845 10.1128/AEM.68.9.4472-4479. 2002 (Pubitemid 34988130)
48. Ridley C. P., Ho Y. L., Khosla C., Evolution of polyketide synthases in bacteria. Proceedings of the National Academy of Sciences of the United States of America 2008 105 12 4595 4600 2-s2.0-42449158575 10.1073/pnas.0710107105 (Pubitemid 351753793)
49. Steffensky M., Mühlenweg A., Wang Z. X., Li S. M., Heide L., Identification of the novobiocin biosynthetic gene cluster of Streptomyces spheroides NCIB 11891. Antimicrobial Agents and Chemotherapy 2000 44 5 1214 1222 2-s2.0-0034048695 10.1128/AAC.44.5.1214-1222.2000 (Pubitemid 30228297)
50. Liu W., Shen B., Genes for production of the enediyne antitumor antibiotic C-1027 in Streptomyces globisporus are clustered with the cagA gene that encodes the C-1027 apoprotein. Antimicrobial Agents and Chemotherapy 2000 44 2 382 392 2-s2.0-0033984077 10.1128/AAC.44.2.382-392.2000 (Pubitemid 30060735)
51. Ramos A., Lombó F., Braña A. F., Rohr J., Méndez C., Salas J. A., Biosynthesis of elloramycin in Streptomyces olivaceus requires glycosylation by enzymes encoded outside the aglycon cluster. Microbiology 2008 154 3 781 788 2-s2.0-42949168430 10.1099/mic.0.2007/014035-0 (Pubitemid 351736292)
52. Li W., Khullar A., Chou S., Sacramo A., Gerratana B., Biosynthesis of sibiromycin, a potent antitumor antibiotic. Applied and Environmental Microbiology 2009 75 9 2869 2878 2-s2.0-65549123941 10.1128/AEM.02326-08
53. Kharel M. K., Nybo S. E., Shepherd M. D., Rohr J., Cloning and characterization of the ravidomycin and chrysomycin biosynthetic gene clusters. ChemBioChem 2010 11 4 523 532 2-s2.0-77149132457 10.1002/cbic.200900673
54. Yoon T. M., Kim J. W., Kim J. G., Kim W. G., Suh J. W., Talosins A and B: new isoflavonol glycosides with potent antifungal activity from Kitasatospora kifunensis MJM341 I. Taxonomy, fermentation, isolation, and biological activities. Journal of Antibiotics 2006 59 10 633 639 2-s2.0-33845342485 10.1038/ja.2006.84 (Pubitemid 44870939)
55. Kaysser L., Wemakor E., Siebenberg S., Salas J. A., Sohng J. K., Kammerer B., Gust B., Formation and attachment of the deoxysugar moiety and assembly of the gene cluster for caprazamycin biosynthesis. Applied and Environmental Microbiology 2010 76 12 4008 4018 2-s2.0-77953630416 10.1128/AEM.02740-09
56. Zhang G., Zhang H., Li S., Characterization of the amicetin biosynthesis gene cluster from Streptomyces vinaceusdrappus NRRL 2363 implicates two alternative strategies for amide bond formation. Applied and Environmental Microbiology 2012 78 7 2393 2401 10.1128/AEM.07185-11
57. Lee S. D., Nocardia jejuensis sp. nov., a novel actinomycete isolated from a natural cave on Jeju Island, Republic of Korea. International Journal of Systematic and Evolutionary Microbiology 2006 56 3 559 562 2-s2.0-33645231296 10.1099/ijs.0.63866-0
58. Margesin R., Schinner F., Potential of halotolerant and halophilic microorganisms for biotechnology. Extremophiles 2001 5 2 73 83 2-s2.0-0035319086 10.1007/s007920100184 (Pubitemid 33725466)
59. Oren A., Industrial and environmental applications of halophilic microorganisms. Environmental Technology 2010 31 8-9 825 834 2-s2.0-77953700376 10.1080/09593330903370026
60. Selama O., James P., Nateche F., Wellington E. M. H., Hacène H., The world bacterial biogeography and biodiversity through databases: a case study of NCBI Nucleotide Database and GBIF Database. BioMed Research International 2013 2013 11 240175 10.1155/2013/240175