-
1
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
DOI 10.1093/nar/25.17.3389
-
SF Altschul TL Madden AA Schaffer, et al. 1997 Gapped BLAST and PSI-BLAST: a new generation of protein database search programs Nucleic Acids Res 25 3389 3402 9254694 10.1093/nar/25.17.3389 1:CAS:528:DyaK2sXlvFyhu7w%3D (Pubitemid 27359211)
-
(1997)
Nucleic Acids Research
, vol.25
, Issue.17
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
2
-
-
77953651099
-
Family IV. Heliobacteriaceae
-
P. De Vos G.M. Garrity D. Jones N.R. Krieg W. Ludwig F.A. Rainey K.H. Schleifer B. Whitman (eds). 2 3 Springer Dordrecht
-
Asao M, Madigan MT (2009) Family IV. Heliobacteriaceae. In: De Vos P, Garrity GM, Jones D, Krieg NR, Ludwig W, Rainey FA, Schleifer KH, Whitman B (eds) The Firmicutes, vol 3, 2nd edn. Springer, Dordrecht, pp 913-916
-
(2009)
The Firmicutes
, pp. 913-916
-
-
Asao, M.1
Madigan, M.T.2
-
3
-
-
0018419825
-
Methanogens: Reevaluation of a unique biological group
-
WE Balch GE Fox LJ Magrum CR Woese, et al. 1979 Methanogens: reevaluation of a unique biological group Microbiol Rev 43 260 296 390357 1:CAS:528:DyaE1MXkvVKqurc%3D (Pubitemid 9231879)
-
(1979)
Microbiological Reviews
, vol.43
, Issue.2
, pp. 260-296
-
-
Balch, W.E.1
Fox, G.E.2
Magrum, L.J.3
-
4
-
-
2942711661
-
Clostridium tunisiense sp. nov., a new proteolytic, sulfur-reducing bacterium isolated from an olive mill wastewater contaminated by phosphogypse
-
DOI 10.1016/j.anaerobe.2004.04.002, PII S1075996404000290
-
O Ben Dhia Thabet ML Fardeau C Joulian, et al. 2004 Clostridium tunisiense sp. nov., a new proteolytic, sulphur-reducing bacterium isolated from an olive mill wastewater contaminated by phosphogypse Anaerobe 10 185 190 10.1016/j.anaerobe.2004.04.002 (Pubitemid 38789120)
-
(2004)
Anaerobe
, vol.10
, Issue.3
, pp. 185-190
-
-
Thabet, O.B.D.1
Fardeau, M.-L.2
Joulian, C.3
Thomas, P.4
Hamdi, M.5
Garcia, J.-L.6
Ollivier, B.7
-
6
-
-
0017758250
-
A rapid method for the base ratio determination of bacterial DNA
-
DOI 10.1016/0003-2697(77)90720-5
-
P Cashion MA Holder-Franklin J McCully, et al. 1977 A rapid method for the base ratio determination of bacterial DNA Anal Biochem 81 461 466 907108 10.1016/0003-2697(77)90720-5 1:CAS:528:DyaE2sXkvFyhtb4%3D (Pubitemid 8175059)
-
(1977)
Analytical Biochemistry
, vol.81
, Issue.2
, pp. 461-466
-
-
Cashion, P.1
Holder Franklin, M.A.2
McCully, J.3
Franklin, M.4
-
7
-
-
58149200948
-
The Ribosomal Database Project: Improved alignments and new tools for rRNA analysis
-
(Database issue) doi: 10.1093/nar/gkn879
-
Cole JR, Wang Q, Cardenas E, Fish J et al. (2009) The Ribosomal Database Project: improved alignments and new tools for rRNA analysis. Nucleic Acids Res 37(Database issue): D141-D145. doi: 10.1093/nar/gkn879
-
(2009)
Nucleic Acids Res
, vol.37
-
-
Cole, J.R.1
Wang, Q.2
Cardenas, E.3
Fish, J.4
-
8
-
-
0028126829
-
The phylogeny of the genus Clostridium: Proposal of five new genera and eleven new species combinations
-
MD Collins PA Lawson A Willems, et al. 1994 The phylogeny of the genus Clostridium: proposal of five new genera and eleven new species combinations Int J Syst Bacteriol 44 812 826 7981107 10.1099/00207713-44-4-812 1:STN:280:DyaK2M%2FntF2jsA%3D%3D (Pubitemid 24315163)
-
(1994)
International Journal of Systematic Bacteriology
, vol.44
, Issue.4
, pp. 812-826
-
-
Collins, M.D.1
Lawson, P.A.2
Willems, A.3
Cordoba, J.J.4
Fernandez-Garayzabal, J.5
Garcia, P.6
Cai, J.7
Hippe, H.8
Farrow, J.A.E.9
-
9
-
-
0029821778
-
Thermobrachium celere gen. nov., sp. nov., a rapidly growing thermophilic, alkalitolerant, and proteolytic obligate anaerobe
-
M Engle Y Li F Rainey, et al. 1996 Thermobrachium celere gen. nov., sp. nov., a rapidly growing thermophilic, alkalitolerant, and proteolytic obligate anaerobe Int J Syst Bacteriol 46 1025 1033 8863432 10.1099/00207713-46-4-1025 1:STN:280:DyaK2s%2Fhs1yjtA%3D%3D (Pubitemid 26339229)
-
(1996)
International Journal of Systematic Bacteriology
, vol.46
, Issue.4
, pp. 1025-1033
-
-
Engle, M.1
Li, Y.2
Rainey, F.3
DeBlois, S.4
Mai, V.5
Reichert, A.6
Mayer, F.7
Messner, P.8
Wiegel, J.9
-
10
-
-
84954213754
-
Family VI. Peptococcaceae
-
P. De Vos G.M. Garrity D. Jones N.R. Krieg W. Ludwig F.A. Rainey K.H. Schleifer B. Whitman (eds). 2 3 Springer Dordrecht
-
Esaki T (2009) Family VI. Peptococcaceae. In: De Vos P, Garrity GM, Jones D, Krieg NR, Ludwig W, Rainey FA, Schleifer KH, Whitman B (eds) The Firmicutes, vol 3, 2nd edn. Springer, Dordrecht, pp 969-971
-
(2009)
The Firmicutes
, pp. 969-971
-
-
Esaki, T.1
-
11
-
-
0019037990
-
Thermal stability and renaturation of DNA in dimethylsulphoxide solutions: Acceleration of renaturation rate
-
7397315 10.1002/bip.1980.360190708 1:CAS:528:DyaL3cXlt1Ogtr4%3D
-
JF Escara JR Hutton 1980 Thermal stability and renaturation of DNA in dimethylsulphoxide solutions: acceleration of renaturation rate Biopolymers 19 1315 1327 7397315 10.1002/bip.1980.360190708 1:CAS:528:DyaL3cXlt1Ogtr4%3D
-
(1980)
Biopolymers
, vol.19
, pp. 1315-1327
-
-
Escara, J.F.1
Hutton, J.R.2
-
12
-
-
79954441400
-
Genus III. Caldanaerobacter
-
P. De Vos G.M. Garrity D. Jones N.R. Krieg W. Ludwig F.A. Rainey K.H. Schleifer B. Whitman (eds). 2 3 Springer Dordrecht
-
Fardeau ML, Ollivier B, Cayol JL (2009) Genus III. Caldanaerobacter. In: De Vos P, Garrity GM, Jones D, Krieg NR, Ludwig W, Rainey FA, Schleifer KH, Whitman B (eds) The Firmicutes, vol 3, 2nd edn. Springer, Dordrecht, pp 1241-1244
-
(2009)
The Firmicutes
, pp. 1241-1244
-
-
Fardeau, M.L.1
Ollivier, B.2
Cayol, J.L.3
-
13
-
-
0000461280
-
Confidence limits on phylogenies: An approach using the bootstrap
-
10.2307/2408678
-
J Felsenstein 1985 Confidence limits on phylogenies: an approach using the bootstrap Evolution 39 783 791 10.2307/2408678
-
(1985)
Evolution
, vol.39
, pp. 783-791
-
-
Felsenstein, J.1
-
14
-
-
0002051540
-
BioEdit: A user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT
-
1:CAS:528:DC%2BD3cXhtVyjs7Y%3D
-
TA Hall 1999 BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT Nucleic Acids Symp Ser 41 95 98 1:CAS:528:DC%2BD3cXhtVyjs7Y%3D
-
(1999)
Nucleic Acids Symp ser
, vol.41
, pp. 95-98
-
-
Hall, T.A.1
-
15
-
-
11944273392
-
Use of low nutrient enrichments to access novel amylase genes in silent diversity of thermophiles
-
DOI 10.1007/s11274-004-2623-4
-
CFV Hobel VT Marteinsson S Hauksdóttir, et al. 2004 Use of low nutrient enrichments to access novel amylase genes in silent diversity of thermophiles World J Microbiol Biotechnol 20 801 809 10.1007/s11274-004-2623-4 1:CAS:528:DC%2BD2cXpvV2qsLY%3D (Pubitemid 40099315)
-
(2004)
World Journal of Microbiology and Biotechnology
, vol.20
, Issue.8
, pp. 801-809
-
-
Hobel, C.F.V.1
Marteinsson, V.T.2
Hauksdottir, S.3
Fridjonsson, O.H.4
Skirnisdottir, S.5
Hreggvidsson, G.O.6
Kristjansson, J.K.7
-
16
-
-
77956868541
-
A roll tube method for the cultivation of strict anaerobes
-
J.R. Norris D.W. Ribbons (eds). Academic Press New York
-
Hungate RE (1969) A roll tube method for the cultivation of strict anaerobes. In: Norris JR, Ribbons DW (eds) Methods in microbiology, vol 3B. Academic Press, New York, pp 117-132
-
(1969)
Methods in Microbiology, Vol 3B
, pp. 117-132
-
-
Hungate, R.E.1
-
17
-
-
0000732090
-
Evolution of protein molecules
-
H.N. Munro (eds). Academic Press New York
-
Jukes TH, Cantor CR (1969) Evolution of protein molecules. In: Munro HN (ed) Mammalian protein metabolism. Academic Press, New York, pp 21-132
-
(1969)
Mammalian Protein Metabolism
, pp. 21-132
-
-
Jukes, T.H.1
Cantor, C.R.2
-
18
-
-
33846151740
-
Biochemical and phylogenetic characterization of a novel terrestrial hyperthermophilic archaeon pertaining to the genus Pyrococcus from an Algerian hydrothermal hot spring
-
DOI 10.1007/s00792-006-0010-9
-
M Kecha S Benallaoua JP Touzel, et al. 2007 Biochemical and phylogenetic characterization of a novel terrestrial hyperthermophilic archaeon pertaining to the genus Pyrococcus from an Algerian hydrothermal hot spring Extremophiles 11 65 73 16969710 10.1007/s00792-006-0010-9 1:CAS:528:DC%2BD2sXjsFOjsQ%3D%3D (Pubitemid 46089630)
-
(2007)
Extremophiles
, vol.11
, Issue.1
, pp. 65-73
-
-
Kecha, M.1
Benallaoua, S.2
Touzel, J.P.3
Bonaly, R.4
Duchiron, F.5
-
19
-
-
0000198211
-
Precise measurement of the G+C content of deoxyribonucleic acid by high-performance liquid chromatography
-
10.1099/00207713-39-2-159 1:CAS:528:DyaL1MXltFWku7o%3D
-
M Mesbah U Premachandran WB Whitman 1989 Precise measurement of the G+C content of deoxyribonucleic acid by high-performance liquid chromatography Int J Syst Bacteriol 39 159 167 10.1099/00207713-39-2-159 1:CAS:528: DyaL1MXltFWku7o%3D
-
(1989)
Int J Syst Bacteriol
, vol.39
, pp. 159-167
-
-
Mesbah, M.1
Premachandran, U.2
Whitman, W.B.3
-
20
-
-
33747333106
-
Use of dinitrosalicylic acid reagent for determination of reducing sugars
-
10.1021/ac60147a030 1:CAS:528:DyaG1MXmtFKiuw%3D%3D
-
GL Miller 1959 Use of dinitrosalicylic acid reagent for determination of reducing sugars Anal Chem 31 426 442 10.1021/ac60147a030 1:CAS:528: DyaG1MXmtFKiuw%3D%3D
-
(1959)
Anal Chem
, vol.31
, pp. 426-442
-
-
Miller, G.L.1
-
21
-
-
75849147281
-
Genus II. Thermoanaerobacterium
-
P. De Vos G.M. Garrity D. Jones N.R. Krieg W. Ludwig F.A. Rainey K.H. Schleifer B. Whitman (eds). 2 3 Springer Dordrecht
-
Onyenwoke RU, Wiegel J (2009) Genus II. Thermoanaerobacterium. In: De Vos P, Garrity GM, Jones D, Krieg NR, Ludwig W, Rainey FA, Schleifer KH, Whitman B (eds) The Firmicutes, vol 3, 2nd edn. Springer, Dordrecht, pp 1279-1287
-
(2009)
The Firmicutes
, pp. 1279-1287
-
-
Onyenwoke, R.U.1
Wiegel, J.2
-
22
-
-
77955653964
-
Genus I. Thermoanaerobacter
-
P. De Vos G.M. Garrity D. Jones N.R. Krieg W. Ludwig F.A. Rainey K.H. Schleifer B. Whitman (eds). 2 3 Springer Dordrecht
-
Onyenwoke RU, Wiegel J (2009) Genus I. Thermoanaerobacter. In: De Vos P, Garrity GM, Jones D, Krieg NR, Ludwig W, Rainey FA, Schleifer KH, Whitman B (eds) The Firmicutes, vol 3, 2nd edn. Springer, Dordrecht, pp 1225-1239
-
(2009)
The Firmicutes
, pp. 1225-1239
-
-
Onyenwoke, R.U.1
Wiegel, J.2
-
23
-
-
0023104761
-
Clostridium fervidus sp. nov., a new chemoorganotrophic acetogenic thermophile
-
BKC Patel C Monk H Littleworth, et al. 1987 Clostridium fervidus sp. nov., a new chemoorganotrophic acetogenic thermophile Int J Syst Bacteriol 37 123 126 10.1099/00207713-37-2-123 1:CAS:528:DyaL2sXitFSksr8%3D (Pubitemid 17050755)
-
(1987)
International Journal of Systematic Bacteriology
, vol.37
, Issue.2
, pp. 123-126
-
-
Patel, B.K.C.1
Monk, C.2
Littleworth, H.3
-
24
-
-
78649658138
-
Order I. Clostridiales
-
P. De Vos G.M. Garrity D. Jones N.R. Krieg W. Ludwig F.A. Rainey K.H. Schleifer B. Whitman (eds). 2 3 Springer Dordrecht
-
Rayney FA (2009) Order I. Clostridiales. In: De Vos P, Garrity GM, Jones D, Krieg NR, Ludwig W, Rainey FA, Schleifer KH, Whitman B (eds) The Firmicutes, vol 3, 2nd edn. Springer, Dordrecht, p 736
-
(2009)
The Firmicutes
, pp. 736
-
-
Rayney, F.A.1
-
25
-
-
0023375195
-
The neighbor-joining method: A new method for reconstructing phylogenetic trees
-
N Saitou M Nei 1987 The neighbor-joining method: a new method for reconstructing phylogenetic trees Mol Biol Evol 4 405 425
-
(1987)
Mol Biol Evol
, vol.4
, pp. 405-425
-
-
Saitou, N.1
Nei, M.2
-
26
-
-
84975246903
-
Family syntrophomonadaceae
-
P. De Vos G.M. Garrity D. Jones N.R. Krieg W. Ludwig F.A. Rainey K.H. Schleifer B. Whitman (eds). 2 3 Springer Dordrecht
-
Sekiguchi Y (2009) Family Syntrophomonadaceae. In: De Vos P, Garrity GM, Jones D, Krieg NR, Ludwig W, Rainey FA, Schleifer KH, Whitman B (eds) The Firmicutes, vol 3, 2nd edn. Springer, Dordrecht, pp 1044-1045
-
(2009)
The Firmicutes
, pp. 1044-1045
-
-
Sekiguchi, Y.1
-
27
-
-
33244463973
-
Tepidimicrobium ferriphilum gen. nov., sp. nov., a novel moderately thermophilic, Fe(III)-reducing bacterium of the order Clostridiales
-
DOI 10.1099/ijs.0.63694-0
-
AI Slobodkin TP Tourova NA Kostrikina, et al. 2006 Tepidimicrobium ferriphilum gen. nov., sp. nov., a novel moderately thermophilic, Fe(III)-reducing bacterium of the order Clostridiales Int J Syst Evol Microbiol 56 369 372 16449442 10.1099/ijs.0.63694-0 1:CAS:528:DC%2BD28XislKhtLs%3D (Pubitemid 43273850)
-
(2006)
International Journal of Systematic and Evolutionary Microbiology
, vol.56
, Issue.2
, pp. 369-372
-
-
Slobodkin, A.I.1
Tourova, T.P.2
Kostrikina, N.A.3
Lysenko, A.M.4
German, K.E.5
Bonch-Osmolovskaya, E.A.6
Birkeland, N.-K.7
-
28
-
-
41349115515
-
Diversity of thermophilic anaerobes
-
DOI 10.1196/annals.1419.029, Incredible Anaerobes From Physiology to Genomics to Fuels
-
ID Wagner J Wiegel 2008 Diversity of thermophilic anaerobes Ann N Y Acad Sci 1125 1 43 18378585 10.1196/annals.1419.029 1:CAS:528:DC%2BD1cXlsV2rsrs%3D (Pubitemid 351451170)
-
(2008)
Annals of the New York Academy of Sciences
, vol.1125
, pp. 1-43
-
-
Wagner, I.D.1
Wiegel, J.2
-
29
-
-
0000770675
-
Report of the Ad Hoc committee on reconciliation of approaches to bacterial systematics
-
10.1099/00207713-37-4-463
-
LG Wayne DJ Brenner RR Colwell, et al. 1987 Report of the Ad Hoc committee on reconciliation of approaches to bacterial systematics Int J Syst Bacteriol 37 463 464 10.1099/00207713-37-4-463
-
(1987)
Int J Syst Bacteriol
, vol.37
, pp. 463-464
-
-
Wayne, L.G.1
Brenner, D.J.2
Colwell, R.R.3
-
30
-
-
0026067797
-
16S Ribosomal DNA Amplification for phylogenetic study
-
1987160 1:CAS:528:DyaK3MXhsl2lurY%3D
-
WG Weisburg SM Barns DA Pelletier, et al. 1991 16S Ribosomal DNA Amplification for phylogenetic study J Bacteriol 173 697 703 1987160 1:CAS:528:DyaK3MXhsl2lurY%3D
-
(1991)
J Bacteriol
, vol.173
, pp. 697-703
-
-
Weisburg, W.G.1
Barns, S.M.2
Pelletier, D.A.3
-
31
-
-
77951768239
-
Order III. Thermoanaerobacterales
-
P. De Vos G.M. Garrity D. Jones N.R. Krieg W. Ludwig F.A. Rainey K.H. Schleifer B. Whitman (eds). 2 3 Springer Dordrecht
-
Wiegel J (2009) Order III. Thermoanaerobacterales. In: De Vos P, Garrity GM, Jones D, Krieg NR, Ludwig W, Rainey FA, Schleifer KH, Whitman B (eds) The Firmicutes, vol 3, 2nd edn. Springer, Dordrecht, p 1224
-
(2009)
The Firmicutes
, pp. 1224
-
-
Wiegel, J.1
-
32
-
-
78651439052
-
Family I. Clostridiaceae
-
P. De Vos G.M. Garrity D. Jones N.R. Krieg W. Ludwig F.A. Rainey K.H. Schleifer B. Whitman (eds). 2 3 Springer Dordrecht
-
Wiegel J (2009) Family I. Clostridiaceae. In: De Vos P, Garrity GM, Jones D, Krieg NR, Ludwig W, Rainey FA, Schleifer KH, Whitman B (eds) The Firmicutes, vol 3, 2nd edn. Springer, Dordrecht, pp 736-738
-
(2009)
The Firmicutes
, pp. 736-738
-
-
Wiegel, J.1
-
33
-
-
0000027787
-
A definition of the domains, Archaea, Bacteria and Eucarya in terms of small subunit ribosomal RNA characteristics
-
S Winker CR Woese 1991 A definition of the domains, Archaea, Bacteria and Eucarya in terms of small subunit ribosomal RNA characteristics Syst Appl Microbiol 13 161 165
-
(1991)
Syst Appl Microbiol
, vol.13
, pp. 161-165
-
-
Winker, S.1
Woese, C.R.2
-
34
-
-
76849114726
-
Caldicoprobacter oshimai gen. nov., sp. nov., an anaerobic, xylanolytic, extremely thermophilic bacterium isolated from sheep faeces, and proposal of Caldicoprobacteraceae fam. nov
-
19648349 10.1099/ijs.0.011379-0 1:CAS:528:DC%2BC3cXis1agu7o%3D
-
H Yokoyama ID Wagner J Wiegel 2010 Caldicoprobacter oshimai gen. nov., sp. nov., an anaerobic, xylanolytic, extremely thermophilic bacterium isolated from sheep faeces, and proposal of Caldicoprobacteraceae fam. nov Int J Syst Evol Microbiol 60 67 71 19648349 10.1099/ijs.0.011379-0 1:CAS:528: DC%2BC3cXis1agu7o%3D
-
(2010)
Int J Syst Evol Microbiol
, vol.60
, pp. 67-71
-
-
Yokoyama, H.1
Wagner, I.D.2
Wiegel, J.3
|