메뉴 건너뛰기




Volumn 17, Issue 3, 2006, Pages 250-255

New opportunities revealed by biotechnological explorations of extremophiles

Author keywords

[No Author keywords available]

Indexed keywords

BIOCHEMISTRY; BIOLOGY; BIOTECHNOLOGY; GENETIC ENGINEERING;

EID: 33744928103     PISSN: 09581669     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.copbio.2006.05.002     Document Type: Review
Times cited : (122)

References (56)
  • 1
    • 27844584367 scopus 로고    scopus 로고
    • Industrial relevance of thermophilic Archaea
    • Egorova K., and Antranikian G. Industrial relevance of thermophilic Archaea. Current Opp Microbiol 8 (2005) 1-7
    • (2005) Current Opp Microbiol , vol.8 , pp. 1-7
    • Egorova, K.1    Antranikian, G.2
  • 2
    • 11144243173 scopus 로고    scopus 로고
    • The biocatalytic potential of extremophiles and extremozymes
    • Gomes J., and Steiner W. The biocatalytic potential of extremophiles and extremozymes. Food Technol Biotechnol 42 (2004) 223-235
    • (2004) Food Technol Biotechnol , vol.42 , pp. 223-235
    • Gomes, J.1    Steiner, W.2
  • 3
    • 16244419351 scopus 로고    scopus 로고
    • Recent progress towards the application of hyperthermophiles and their enzymes
    • Atomi H. Recent progress towards the application of hyperthermophiles and their enzymes. Curr Opin Chem Biol 9 (2005) 166-173
    • (2005) Curr Opin Chem Biol , vol.9 , pp. 166-173
    • Atomi, H.1
  • 4
    • 0037590011 scopus 로고    scopus 로고
    • Extremophiles as a source for novel enzymes
    • van den Burg B. Extremophiles as a source for novel enzymes. Curr Opin Microbiol 6 (2003) 213-218
    • (2003) Curr Opin Microbiol , vol.6 , pp. 213-218
    • van den Burg, B.1
  • 5
    • 27844612307 scopus 로고    scopus 로고
    • Extreme environments as a source for microorganisms and novel biocatalysts
    • A detailed review compiled on a large body of literature on the biotechnological aspects of extremophiles.
    • Antranikian G., Vorgias G.E., and Bertoldo C. Extreme environments as a source for microorganisms and novel biocatalysts. Adv Biochem Eng Biotechnol 96 (2005) 219-262. A detailed review compiled on a large body of literature on the biotechnological aspects of extremophiles.
    • (2005) Adv Biochem Eng Biotechnol , vol.96 , pp. 219-262
    • Antranikian, G.1    Vorgias, G.E.2    Bertoldo, C.3
  • 6
    • 1642480180 scopus 로고    scopus 로고
    • Bioleaching review part A: progress in bioleaching: fundamentals and mechanisms of bacterial metal sulfide oxidation
    • Rohwerder T., Gehrke T., Kinzler K., and Sand W. Bioleaching review part A: progress in bioleaching: fundamentals and mechanisms of bacterial metal sulfide oxidation. Appl Microbiol Biotechnol 63 (2003) 239-248
    • (2003) Appl Microbiol Biotechnol , vol.63 , pp. 239-248
    • Rohwerder, T.1    Gehrke, T.2    Kinzler, K.3    Sand, W.4
  • 7
    • 1642480172 scopus 로고    scopus 로고
    • Bioleaching review part B: progress in bioleaching: applications of microbial processes by the minerals industries
    • Olson G.J., Brierley J.A., and Brierley C.L. Bioleaching review part B: progress in bioleaching: applications of microbial processes by the minerals industries. Appl Microbiol Biotechnol 63 (2003) 249-257
    • (2003) Appl Microbiol Biotechnol , vol.63 , pp. 249-257
    • Olson, G.J.1    Brierley, J.A.2    Brierley, C.L.3
  • 9
    • 26844536951 scopus 로고    scopus 로고
    • Characteristics and adaptability of iron- and sulfur-oxidizing microorganisms used for the recovery of metals from minerals and their concentrates
    • A research review on the physiology and genetic adaptability of biomining microbes supplemented with new data.
    • Rawlings D.E. Characteristics and adaptability of iron- and sulfur-oxidizing microorganisms used for the recovery of metals from minerals and their concentrates. Microb Cell Fact 4 (2005) 13. A research review on the physiology and genetic adaptability of biomining microbes supplemented with new data.
    • (2005) Microb Cell Fact , vol.4 , pp. 13
    • Rawlings, D.E.1
  • 10
    • 32044473046 scopus 로고    scopus 로고
    • Biodegradation of petroleum hydrocarbons in seawater at low temperatures (0-5 degrees C) and bacterial communities associated with degradation
    • Brakstad O.G., and Bonaunet K. Biodegradation of petroleum hydrocarbons in seawater at low temperatures (0-5 degrees C) and bacterial communities associated with degradation. Biodegradation 17 (2006) 71-82
    • (2006) Biodegradation , vol.17 , pp. 71-82
    • Brakstad, O.G.1    Bonaunet, K.2
  • 12
    • 33744920623 scopus 로고    scopus 로고
    • Robertson D.E., and Noel J.P. (Eds), Elsevier
    • In: Robertson D.E., and Noel J.P. (Eds). Methods in Enzymology: Protein Engineering vol. 388 (2004), Elsevier
    • (2004) Methods in Enzymology: Protein Engineering , vol.388
  • 15
    • 28444448431 scopus 로고    scopus 로고
    • Increased alkali stability in Trichoderma reesei endo-1, 4-β-xylanase II by site directed mutagenesis
    • Fenel F., Zitting A.J., and Kantelinen A. Increased alkali stability in Trichoderma reesei endo-1, 4-β-xylanase II by site directed mutagenesis. J Biotechnol 121 (2006) 102-107
    • (2006) J Biotechnol , vol.121 , pp. 102-107
    • Fenel, F.1    Zitting, A.J.2    Kantelinen, A.3
  • 16
    • 24644472817 scopus 로고    scopus 로고
    • Physics and evolution of thermophilic adaptation
    • Berezovsky I.N., and Shakhnovich E.I. Physics and evolution of thermophilic adaptation. Proc Natl Acad Sci USA 102 (2005) 12742-12747
    • (2005) Proc Natl Acad Sci USA , vol.102 , pp. 12742-12747
    • Berezovsky, I.N.1    Shakhnovich, E.I.2
  • 17
    • 25844482592 scopus 로고    scopus 로고
    • Prediction of protein thermostability with a direction- and distance-dependent knowledge-based potential
    • Hoppe C., and Schomburg D. Prediction of protein thermostability with a direction- and distance-dependent knowledge-based potential. Protein Sci 14 (2005) 2682-2692
    • (2005) Protein Sci , vol.14 , pp. 2682-2692
    • Hoppe, C.1    Schomburg, D.2
  • 18
    • 18244373419 scopus 로고    scopus 로고
    • Computational thermostabilization of an enzyme
    • A predictive protein thermostabilization study combined with structural and metabolic analyses.
    • Korkegian A., Black M.E., Baker D., and Stoddard B.L. Computational thermostabilization of an enzyme. Science 308 (2005) 857-860. A predictive protein thermostabilization study combined with structural and metabolic analyses.
    • (2005) Science , vol.308 , pp. 857-860
    • Korkegian, A.1    Black, M.E.2    Baker, D.3    Stoddard, B.L.4
  • 19
    • 25144491745 scopus 로고    scopus 로고
    • How genomics has affected the concept of microbiology
    • Ward N., and Fraser C.M. How genomics has affected the concept of microbiology. Curr Opin Microbiol 8 (2005) 564-571
    • (2005) Curr Opin Microbiol , vol.8 , pp. 564-571
    • Ward, N.1    Fraser, C.M.2
  • 20
    • 25144462641 scopus 로고    scopus 로고
    • Genomic perspectives in microbial oceanography
    • DeLong E.F., and Karl D.M. Genomic perspectives in microbial oceanography. Nature 437 (2005) 336-342
    • (2005) Nature , vol.437 , pp. 336-342
    • DeLong, E.F.1    Karl, D.M.2
  • 21
    • 25144481477 scopus 로고    scopus 로고
    • The secret of being cool
    • Galperin M.Y. The secret of being cool. Environ Microbiol 7 (2005) 1499-1504
    • (2005) Environ Microbiol , vol.7 , pp. 1499-1504
    • Galperin, M.Y.1
  • 25
    • 20044393188 scopus 로고    scopus 로고
    • Life at depth: Photobacterium profundum genome sequence and expression analysis
    • A study of the genomic determinants of bacterial adaptation to high pressure and low temperature.
    • Vezzi A., Campanaro S., D'Angelo M., Simonato F., Vitulo N., Lauro F.M., Cestaro A., Malacrida G., Simionati B., Cannata N., et al. Life at depth: Photobacterium profundum genome sequence and expression analysis. Science 307 (2005) 1459-1461. A study of the genomic determinants of bacterial adaptation to high pressure and low temperature.
    • (2005) Science , vol.307 , pp. 1459-1461
    • Vezzi, A.1    Campanaro, S.2    D'Angelo, M.3    Simonato, F.4    Vitulo, N.5    Lauro, F.M.6    Cestaro, A.7    Malacrida, G.8    Simionati, B.9    Cannata, N.10
  • 26
    • 1842509102 scopus 로고    scopus 로고
    • Psychrophilic enzymes: hot topics in cold adaptation
    • Feller G., and Gerday C. Psychrophilic enzymes: hot topics in cold adaptation. Nat Rev Microbiol 1 (2003) 200-208
    • (2003) Nat Rev Microbiol , vol.1 , pp. 200-208
    • Feller, G.1    Gerday, C.2
  • 28
    • 0037383069 scopus 로고    scopus 로고
    • Potential genomic determinants of hyperthermophily
    • Makarova K.S., Wolf Y., and Koonin E.V. Potential genomic determinants of hyperthermophily. Trends Genet 19 (2003) 172-176
    • (2003) Trends Genet , vol.19 , pp. 172-176
    • Makarova, K.S.1    Wolf, Y.2    Koonin, E.V.3
  • 29
    • 3042814762 scopus 로고    scopus 로고
    • Reverse gyrase is not a prerequisite for hyperthermophilic life
    • Atomi H., Matsumi R., and Imanaka T. Reverse gyrase is not a prerequisite for hyperthermophilic life. J Bacteriol 186 (2004) 4829-4833
    • (2004) J Bacteriol , vol.186 , pp. 4829-4833
    • Atomi, H.1    Matsumi, R.2    Imanaka, T.3
  • 30
    • 22244456412 scopus 로고    scopus 로고
    • Uracil content of 16S rRNA of thermophilic and psychrophilic prokaryotes correlates inversely with their optimal growth temperatures
    • Khachane A.N., Timmis K.N., and Dos Santos V.A. Uracil content of 16S rRNA of thermophilic and psychrophilic prokaryotes correlates inversely with their optimal growth temperatures. Nucleic Acids Res 33 (2005) 4016-4022
    • (2005) Nucleic Acids Res , vol.33 , pp. 4016-4022
    • Khachane, A.N.1    Timmis, K.N.2    Dos Santos, V.A.3
  • 32
    • 0242300069 scopus 로고    scopus 로고
    • The genome of Nanoarchaeum equitans: insights into early archaeal evolution and derived parasitism
    • The first genome of an obligate archaeal symbiont with numerous unique genomic features. The authors propose that Nanoarchaea are a basal archaeal lineage.
    • Waters E., Hohn M.J., Ahel I., Graham D.E., Adams M.D., Barnstead M., Beeson K.Y., Bibbs L., Bolanos R., Keller M., et al. The genome of Nanoarchaeum equitans: insights into early archaeal evolution and derived parasitism. Proc Natl Acad Sci USA 100 (2003) 12984-12988. The first genome of an obligate archaeal symbiont with numerous unique genomic features. The authors propose that Nanoarchaea are a basal archaeal lineage.
    • (2003) Proc Natl Acad Sci USA , vol.100 , pp. 12984-12988
    • Waters, E.1    Hohn, M.J.2    Ahel, I.3    Graham, D.E.4    Adams, M.D.5    Barnstead, M.6    Beeson, K.Y.7    Bibbs, L.8    Bolanos, R.9    Keller, M.10
  • 33
    • 13544250517 scopus 로고    scopus 로고
    • Complete genome sequence of the hyperthermophilic archaeon Thermococcus kodakaraensis KOD1 and comparison with Pyrococcus genomes
    • Fukui T., Atomi H., Kanai T., Matsumi R., Fujiwara S., and Imanaka T. Complete genome sequence of the hyperthermophilic archaeon Thermococcus kodakaraensis KOD1 and comparison with Pyrococcus genomes. Genome Res 15 (2005) 352-363
    • (2005) Genome Res , vol.15 , pp. 352-363
    • Fukui, T.1    Atomi, H.2    Kanai, T.3    Matsumi, R.4    Fujiwara, S.5    Imanaka, T.6
  • 36
    • 0037007636 scopus 로고    scopus 로고
    • A new phylum of Archaea represented by a nanosized hyperthermophilic symbiont
    • The discovery of a new group of Archaea, the first obligate symbiont on another archaeon.
    • Huber H., Hohn M.J., Rachel R., Fuchs T., Wimmer V.C., and Stetter K.O. A new phylum of Archaea represented by a nanosized hyperthermophilic symbiont. Nature 417 (2002) 63-67. The discovery of a new group of Archaea, the first obligate symbiont on another archaeon.
    • (2002) Nature , vol.417 , pp. 63-67
    • Huber, H.1    Hohn, M.J.2    Rachel, R.3    Fuchs, T.4    Wimmer, V.C.5    Stetter, K.O.6
  • 37
    • 13444251251 scopus 로고    scopus 로고
    • Nanoarchaeum equitans creates functional tRNAs from separate genes for their 5′- and 3′-halves
    • Reports the computational prediction and experimental confirmation of the presence of split tRNA genes in N. equitans, the only organism known so far in which such tRNA trans-splicing occurs.
    • Randau L., Munch R., Hohn M.J., Jahn D., and Soll D. Nanoarchaeum equitans creates functional tRNAs from separate genes for their 5′- and 3′-halves. Nature 433 (2005) 537-541. Reports the computational prediction and experimental confirmation of the presence of split tRNA genes in N. equitans, the only organism known so far in which such tRNA trans-splicing occurs.
    • (2005) Nature , vol.433 , pp. 537-541
    • Randau, L.1    Munch, R.2    Hohn, M.J.3    Jahn, D.4    Soll, D.5
  • 38
    • 32044468517 scopus 로고    scopus 로고
    • Protein trans-splicing and characterization of a split family B-type DNA polymerase from the hyperthermophilic archaeal parasite Nanoarchaeum equitans
    • Choi J.J., Nam K.H., Min B., Kim S.J., Soll D., and Kwon S. Protein trans-splicing and characterization of a split family B-type DNA polymerase from the hyperthermophilic archaeal parasite Nanoarchaeum equitans. J Mol Biol 356 (2006) 1093-1106
    • (2006) J Mol Biol , vol.356 , pp. 1093-1106
    • Choi, J.J.1    Nam, K.H.2    Min, B.3    Kim, S.J.4    Soll, D.5    Kwon, S.6
  • 40
    • 25844454133 scopus 로고    scopus 로고
    • Living with two extremes: conclusions from the genome sequence of Natronomonas pharaonis
    • Falb M., Pfeiffer F., Palm P., Rodewald K., Hickmann V., Tittor J., and Oesterhelt D. Living with two extremes: conclusions from the genome sequence of Natronomonas pharaonis. Genome Res 15 (2005) 1336-1343
    • (2005) Genome Res , vol.15 , pp. 1336-1343
    • Falb, M.1    Pfeiffer, F.2    Palm, P.3    Rodewald, K.4    Hickmann, V.5    Tittor, J.6    Oesterhelt, D.7
  • 42
    • 10344227692 scopus 로고    scopus 로고
    • Metagenomics: application of genomics to uncultured microorganisms
    • A detailed review of the types of metagenomic approaches used to study microbial communities and how they can be mined for useful genes.
    • Handelsman J. Metagenomics: application of genomics to uncultured microorganisms. Microbiol Mol Biol Rev 68 (2004) 669-685. A detailed review of the types of metagenomic approaches used to study microbial communities and how they can be mined for useful genes.
    • (2004) Microbiol Mol Biol Rev , vol.68 , pp. 669-685
    • Handelsman, J.1
  • 43
    • 19044401068 scopus 로고    scopus 로고
    • Community genomics in microbial ecology and evolution
    • Allen E.F., and Banfield J.F. Community genomics in microbial ecology and evolution. Nat Rev Microbiol 3 (2005) 489-498
    • (2005) Nat Rev Microbiol , vol.3 , pp. 489-498
    • Allen, E.F.1    Banfield, J.F.2
  • 44
    • 19144366814 scopus 로고    scopus 로고
    • Metagenomics and industrial applications
    • A chronological and approach-specific review of how genomics and metagenomics have impacted the biotechnology industry.
    • Lorenz P., and Eck J. Metagenomics and industrial applications. Nat Rev Microbiol 3 (2005) 510-516. A chronological and approach-specific review of how genomics and metagenomics have impacted the biotechnology industry.
    • (2005) Nat Rev Microbiol , vol.3 , pp. 510-516
    • Lorenz, P.1    Eck, J.2
  • 47
    • 24344443169 scopus 로고    scopus 로고
    • Evolution of a microbial nitrilase gene family: a comparative and environmental genomics study
    • A combination of genomic, metagenomic and biochemical data with phylogenetic analysis leading to new hypotheses on the evolution and function of nitrilases.
    • Podar M., Eads J.R., and Richardson T.H. Evolution of a microbial nitrilase gene family: a comparative and environmental genomics study. BMC Evol Biol 5 (2005) 42. A combination of genomic, metagenomic and biochemical data with phylogenetic analysis leading to new hypotheses on the evolution and function of nitrilases.
    • (2005) BMC Evol Biol , vol.5 , pp. 42
    • Podar, M.1    Eads, J.R.2    Richardson, T.H.3
  • 49
    • 1542377296 scopus 로고    scopus 로고
    • Community structure and metabolism through reconstruction of microbial genomes from the environment
    • The first genomic assembly and detailed microbial community analysis using random sequencing of environmental DNA libraries.
    • Tyson G.W., Chapman J., Hugenholtz P., Allen E.E., Ram R.J., Richardson P.M., Solovyev V.V., Rubin E.M., Rokhsar D.S., and Banfield J.F. Community structure and metabolism through reconstruction of microbial genomes from the environment. Nature 428 (2004) 37-43. The first genomic assembly and detailed microbial community analysis using random sequencing of environmental DNA libraries.
    • (2004) Nature , vol.428 , pp. 37-43
    • Tyson, G.W.1    Chapman, J.2    Hugenholtz, P.3    Allen, E.E.4    Ram, R.J.5    Richardson, P.M.6    Solovyev, V.V.7    Rubin, E.M.8    Rokhsar, D.S.9    Banfield, J.F.10
  • 50
    • 26844447711 scopus 로고    scopus 로고
    • Genome-directed isolation of the key nitrogen fixer Leptospirillum ferrodiazotrophum sp. nov. from an acidophilic microbial community
    • The first microorganism to be isolated using experimental conditions designed on the basis of metagenomic analyses of the microbial community.
    • Tyson G.W., Lo I., Baker B.J., Allen E.E., Hugenholtz P., and Banfield J.F. Genome-directed isolation of the key nitrogen fixer Leptospirillum ferrodiazotrophum sp. nov. from an acidophilic microbial community. Appl Environ Microbiol 71 (2005) 6319-6324. The first microorganism to be isolated using experimental conditions designed on the basis of metagenomic analyses of the microbial community.
    • (2005) Appl Environ Microbiol , vol.71 , pp. 6319-6324
    • Tyson, G.W.1    Lo, I.2    Baker, B.J.3    Allen, E.E.4    Hugenholtz, P.5    Banfield, J.F.6
  • 52
    • 4444370893 scopus 로고    scopus 로고
    • Reverse methanogenesis: testing the hypothesis with environmental genomics
    • The authors used selective enrichment techniques and metagenomic sequencing and analysis to identify genes and infer metabolic characteristics of deep-sea archaeal methanotrophs.
    • Hallam S.J., Putnam N., Preston C.M., Detter J.C., Rokhsar D., Richardson P.M., and DeLong E.F. Reverse methanogenesis: testing the hypothesis with environmental genomics. Science 305 (2004) 1457-1462. The authors used selective enrichment techniques and metagenomic sequencing and analysis to identify genes and infer metabolic characteristics of deep-sea archaeal methanotrophs.
    • (2004) Science , vol.305 , pp. 1457-1462
    • Hallam, S.J.1    Putnam, N.2    Preston, C.M.3    Detter, J.C.4    Rokhsar, D.5    Richardson, P.M.6    DeLong, E.F.7
  • 53
    • 20244376755 scopus 로고    scopus 로고
    • Comparative metagenomics of microbial communities
    • A metagenomic study of three whale fall microbial communities and a soil sample. Comparative analysis of the data with other public metagenomic sequences revealed specific gene signatures and metabolic features that can be used to identify and characterize different consortia.
    • Tringe S.G., von Mering C., Kobayashi A., Salamov A.A., Chen K., Chang H.W., Podar M., Short J.M., Mathur E.J., Detter J.C., et al. Comparative metagenomics of microbial communities. Science 308 (2005) 554-557. A metagenomic study of three whale fall microbial communities and a soil sample. Comparative analysis of the data with other public metagenomic sequences revealed specific gene signatures and metabolic features that can be used to identify and characterize different consortia.
    • (2005) Science , vol.308 , pp. 554-557
    • Tringe, S.G.1    von Mering, C.2    Kobayashi, A.3    Salamov, A.A.4    Chen, K.5    Chang, H.W.6    Podar, M.7    Short, J.M.8    Mathur, E.J.9    Detter, J.C.10
  • 54
    • 29444441352 scopus 로고    scopus 로고
    • Microbial origin of excess methane in glacial ice and implications for life on Mars
    • Tung H.C., Bramall N.E., and Price P.B. Microbial origin of excess methane in glacial ice and implications for life on Mars. Proc Natl Acad Sci USA 102 (2005) 18292-18296
    • (2005) Proc Natl Acad Sci USA , vol.102 , pp. 18292-18296
    • Tung, H.C.1    Bramall, N.E.2    Price, P.B.3
  • 55
    • 33744902917 scopus 로고    scopus 로고
    • Microbial ecology and biodiversity in permafrost
    • Epub ahead of print
    • Steven B., Leveille R., Pollard W.H., and Whyte L.G. Microbial ecology and biodiversity in permafrost. Extremophiles 10 (2006) Epub ahead of print
    • (2006) Extremophiles , vol.10
    • Steven, B.1    Leveille, R.2    Pollard, W.H.3    Whyte, L.G.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.