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Volumn 289, Issue 22, 2014, Pages 15463-15473

Uracil-DNA glycosylase is involved in DNA demethylation and required for embryonic development in the zebrafish embryo

Author keywords

[No Author keywords available]

Indexed keywords

CHEMICAL REACTIONS; TRANSCRIPTION;

EID: 84901706067     PISSN: 00219258     EISSN: 1083351X     Source Type: Journal    
DOI: 10.1074/jbc.M114.561019     Document Type: Article
Times cited : (24)

References (55)
  • 1
    • 84874194072 scopus 로고    scopus 로고
    • DNA methylation: Roles in mammalian development
    • Smith, Z. D., and Meissner, A. (2013) DNA methylation: roles in mammalian development. Nat. Rev. Genet. 14, 204-220
    • (2013) Nat. Rev. Genet. , vol.14 , pp. 204-220
    • Smith, Z.D.1    Meissner, A.2
  • 2
    • 78049414227 scopus 로고    scopus 로고
    • Epigenetic reprogramming in plant and animal development
    • Feng, S., Jacobsen, S. E., and Reik, W. (2010) Epigenetic reprogramming in plant and animal development. Science 330, 622-627
    • (2010) Science , vol.330 , pp. 622-627
    • Feng, S.1    Jacobsen, S.E.2    Reik, W.3
  • 4
    • 0034598784 scopus 로고    scopus 로고
    • Demethylation of the zygotic paternal genome
    • Mayer, W., Niveleau, A., Walter, J., Fundele, R., and Haaf, T. (2000) Demethylation of the zygotic paternal genome. Nature 403, 501-502
    • (2000) Nature , vol.403 , pp. 501-502
    • Mayer, W.1    Niveleau, A.2    Walter, J.3    Fundele, R.4    Haaf, T.5
  • 5
    • 0036145567 scopus 로고    scopus 로고
    • Dynamic reprogramming ofDNAmethylation in the early mouse embryo
    • Santos, F., Hendrich, B., Reik, W., and Dean, W. (2002) Dynamic reprogramming ofDNAmethylation in the early mouse embryo. Dev. Biol. 241, 172-182
    • (2002) Dev. Biol. , vol.241 , pp. 172-182
    • Santos, F.1    Hendrich, B.2    Reik, W.3    Dean, W.4
  • 7
    • 75749142980 scopus 로고    scopus 로고
    • A role for the elongator complex in zygotic paternal genome demethylation
    • Okada, Y., Yamagata, K., Hong, K., Wakayama, T., and Zhang, Y. (2010) A role for the elongator complex in zygotic paternal genome demethylation. Nature 463, 554-558
    • (2010) Nature , vol.463 , pp. 554-558
    • Okada, Y.1    Yamagata, K.2    Hong, K.3    Wakayama, T.4    Zhang, Y.5
  • 8
    • 0036499523 scopus 로고    scopus 로고
    • DNA methylation at promoter regions regulates the timing of gene activation in Xenopus laevis embryos
    • Stancheva, I., El-Maarri, O., Walter, J., Niveleau, A., and Meehan, R. R. (2002) DNA methylation at promoter regions regulates the timing of gene activation in Xenopus laevis embryos. Dev. Biol. 243, 155-165
    • (2002) Dev. Biol. , vol.243 , pp. 155-165
    • Stancheva, I.1    El-Maarri, O.2    Walter, J.3    Niveleau, A.4    Meehan, R.R.5
  • 9
    • 4544291383 scopus 로고    scopus 로고
    • Global changes in genomic methylation levels during early development of the zebrafish embryo
    • Mhanni, A. A., and McGowan, R. A. (2004) Global changes in genomic methylation levels during early development of the zebrafish embryo. Dev. Genes Evol. 214, 412-417
    • (2004) Dev. Genes Evol. , vol.214 , pp. 412-417
    • Mhanni, A.A.1    McGowan, R.A.2
  • 10
    • 35648972684 scopus 로고    scopus 로고
    • Immunological detection of changes in genomicDNAmethylation during early zebrafish development
    • MacKay, A. B., Mhanni, A. A., McGowan, R. A., and Krone, P. H. (2007) Immunological detection of changes in genomicDNAmethylation during early zebrafish development. Genome 50, 778-785
    • (2007) Genome , vol.50 , pp. 778-785
    • Mackay, A.B.1    Mhanni, A.A.2    McGowan, R.A.3    Krone, P.H.4
  • 11
    • 84877711740 scopus 로고    scopus 로고
    • Reprogramming the maternal zebrafish genome after fertilization to match the paternal methylation pattern
    • Potok, M. E., Nix, D. A., Parnell, T. J., and Cairns, B. R. (2013) Reprogramming the maternal zebrafish genome after fertilization to match the paternal methylation pattern. Cell 153, 759-772
    • (2013) Cell , vol.153 , pp. 759-772
    • Potok, M.E.1    Nix, D.A.2    Parnell, T.J.3    Cairns, B.R.4
  • 14
    • 79952763586 scopus 로고    scopus 로고
    • Reprogramming of the paternal genome upon fertilization involves genome-wide oxidation of 5-methylcytosine
    • Iqbal, K., Jin, S. G., Pfeifer, G. P., and Szabó, P. E. (2011) Reprogramming of the paternal genome upon fertilization involves genome-wide oxidation of 5-methylcytosine. Proc. Natl. Acad. Sci. U.S.A. 108, 3642-3647
    • (2011) Proc. Natl. Acad. Sci. U.S.A. , vol.108 , pp. 3642-3647
    • Iqbal, K.1    Jin, S.G.2    Pfeifer, G.P.3    Szabó, P.E.4
  • 16
    • 80054097425 scopus 로고    scopus 로고
    • Replication-dependent loss of 5-hydroxymethylcytosine in mouse preimplantation embryos
    • Inoue, A., and Zhang, Y. (2011) Replication-dependent loss of 5-hydroxymethylcytosine in mouse preimplantation embryos. Science 334, 194
    • (2011) Science , vol.334 , pp. 194
    • Inoue, A.1    Zhang, Y.2
  • 19
    • 0037115911 scopus 로고    scopus 로고
    • Uracil in DNA: Occurrence, consequences and repair
    • Krokan, H. E., Drabløs, F., and Slupphaug, G. (2002) Uracil in DNA: occurrence, consequences and repair. Oncogene 21, 8935-8948
    • (2002) Oncogene , vol.21 , pp. 8935-8948
    • Krokan, H.E.1    Drabløs, F.2    Slupphaug, G.3
  • 22
    • 0017392934 scopus 로고
    • DNA N-glycosidases: Properties of uracil-DNA glycosidase from Escherichia coli
    • Lindahl, T., Ljungquist, S., Siegert, W., Nyberg, B., and Sperens, B. (1977) DNA N-glycosidases: properties of uracil-DNA glycosidase from Escherichia coli. J. Biol. Chem. 252, 3286-3294
    • (1977) J. Biol. Chem. , vol.252 , pp. 3286-3294
    • Lindahl, T.1    Ljungquist, S.2    Siegert, W.3    Nyberg, B.4    Sperens, B.5
  • 24
    • 84887354987 scopus 로고    scopus 로고
    • Active demethylation in mouse zygotes involves cytosine deamination and base excision repair
    • Santos, F., Peat, J., Burgess, H., Rada, C., Reik, W., and Dean, W. (2013) Active demethylation in mouse zygotes involves cytosine deamination and base excision repair. Epigenetics Chromatin 6, 39
    • (2013) Epigenetics Chromatin , vol.6 , pp. 39
    • Santos, F.1    Peat, J.2    Burgess, H.3    Rada, C.4    Reik, W.5    Dean, W.6
  • 25
    • 0032167424 scopus 로고    scopus 로고
    • Base excision repair initiation revealed by crystal structures and binding kinetics of human uracil-DNA glycosylase with DNA
    • Parikh, S. S., Mol, C. D., Slupphaug, G., Bharati, S., Krokan, H. E., and Tainer, J. A. (1998) Base excision repair initiation revealed by crystal structures and binding kinetics of human uracil-DNA glycosylase with DNA. EMBO J. 17, 5214-5226
    • (1998) EMBO J , vol.17 , pp. 5214-5226
    • Parikh, S.S.1    Mol, C.D.2    Slupphaug, G.3    Bharati, S.4    Krokan, H.E.5    Tainer, J.A.6
  • 26
    • 77950866717 scopus 로고    scopus 로고
    • Chromatin signature of embryonic pluripotency is established during genome activation
    • Vastenhouw, N. L., Zhang, Y., Woods, I. G., Imam, F., Regev, A., Liu, X. S., Rinn, J., and Schier, A. F. (2010) Chromatin signature of embryonic pluripotency is established during genome activation. Nature 464, 922-926
    • (2010) Nature , vol.464 , pp. 922-926
    • Vastenhouw, N.L.1    Zhang, Y.2    Woods, I.G.3    Imam, F.4    Regev, A.5    Liu, X.S.6    Rinn, J.7    Schier, A.F.8
  • 30
    • 20644469667 scopus 로고    scopus 로고
    • Bloodthirsty, an RBCC/TRIM gene required for erythropoiesis in zebrafish
    • Yergeau, D. A., Cornell, C. N., Parker, S. K., Zhou, Y., and Detrich, H. W., 3rd (2005) bloodthirsty, an RBCC/TRIM gene required for erythropoiesis in zebrafish. Dev. Biol. 283, 97-112
    • (2005) Dev. Biol. , vol.283 , pp. 97-112
    • Yergeau, D.A.1    Cornell, C.N.2    Parker, S.K.3    Zhou, Y.4    Detrich III, H.W.5
  • 31
    • 20444408738 scopus 로고    scopus 로고
    • Gli function is essential for motor neuron induction in zebrafish
    • Vanderlaan, G., Tyurina, O. V., Karlstrom, R. O., and Chandrasekhar, A. (2005) Gli function is essential for motor neuron induction in zebrafish. Dev. Biol. 282, 550-570
    • (2005) Dev. Biol. , vol.282 , pp. 550-570
    • Vanderlaan, G.1    Tyurina, O.V.2    Karlstrom, R.O.3    Chandrasekhar, A.4
  • 32
    • 79957587784 scopus 로고    scopus 로고
    • Hmx4 regulates Sonic hedgehog signaling through control of retinoic acid synthesis during forebrain patterning
    • Gongal, P. A., March, L. D., Holly, V. L., Pillay, L. M., Berry-Wynne, K. M., Kagechika, H., and Waskiewicz, A. J. (2011) Hmx4 regulates Sonic hedgehog signaling through control of retinoic acid synthesis during forebrain patterning. Dev. Biol. 355, 55-64
    • (2011) Dev. Biol. , vol.355 , pp. 55-64
    • Gongal, P.A.1    March, L.D.2    Holly, V.L.3    Pillay, L.M.4    Berry-Wynne, K.M.5    Kagechika, H.6    Waskiewicz, A.J.7
  • 33
    • 57649196594 scopus 로고    scopus 로고
    • DNA demethylation in zebrafish involves the coupling of a deaminase, a glycosylase, and gadd45
    • Rai, K., Huggins, I. J., James, S. R., Karpf, A. R., Jones, D. A., and Cairns, B. R. (2008) DNA demethylation in zebrafish involves the coupling of a deaminase, a glycosylase, and gadd45. Cell 135, 1201-1212
    • (2008) Cell , vol.135 , pp. 1201-1212
    • Rai, K.1    Huggins, I.J.2    James, S.R.3    Karpf, A.R.4    Jones, D.A.5    Cairns, B.R.6
  • 36
    • 77956189495 scopus 로고    scopus 로고
    • Role of Tet proteins in 5mC to 5hmC conversion, ES-cell self-renewal and inner cell mass specification
    • Ito, S., D'Alessio, A. C., Taranova, O. V., Hong, K., Sowers, L. C., and Zhang, Y. (2010) Role of Tet proteins in 5mC to 5hmC conversion, ES-cell self-renewal and inner cell mass specification. Nature 466, 1129-1133
    • (2010) Nature , vol.466 , pp. 1129-1133
    • Ito, S.1    D'alessio, A.C.2    Taranova, O.V.3    Hong, K.4    Sowers, L.C.5    Zhang, Y.6
  • 37
    • 0042346416 scopus 로고    scopus 로고
    • Valproate induces replicationindependent activeDNAdemethylation
    • Detich, N., Bovenzi, V., and Szyf, M. (2003) Valproate induces replicationindependent activeDNAdemethylation. J. Biol. Chem. 278, 27586-27592
    • (2003) J. Biol. Chem. , vol.278 , pp. 27586-27592
    • Detich, N.1    Bovenzi, V.2    Szyf, M.3
  • 39
    • 55549136099 scopus 로고    scopus 로고
    • Haploid male germ cell- and oocyte-specific Mbd3l1 and Mbd3l2 genes are dispensable for early development, fertility, and zygotic DNA demethylation in the mouse
    • Jin, S. G., Tsark, W., Szabó, P. E., and Pfeifer, G. P. (2008) Haploid male germ cell- and oocyte-specific Mbd3l1 and Mbd3l2 genes are dispensable for early development, fertility, and zygotic DNA demethylation in the mouse. Dev. Dyn. 237, 3435-3443
    • (2008) Dev. Dyn. , vol.237 , pp. 3435-3443
    • Jin, S.G.1    Tsark, W.2    Szabó, P.E.3    Pfeifer, G.P.4
  • 42
    • 43049105333 scopus 로고    scopus 로고
    • Demethylation of (cytosine-5-C-methyl) DNA and regulation of transcription in the epigenetic pathways of cancer development
    • Patra, S. K., Patra, A., Rizzi, F., Ghosh, T. C., and Bettuzzi, S. (2008) Demethylation of (cytosine-5-C-methyl) DNA and regulation of transcription in the epigenetic pathways of cancer development. Cancer Metastasis Rev. 27, 315-334
    • (2008) Cancer Metastasis Rev. , vol.27 , pp. 315-334
    • Patra, S.K.1    Patra, A.2    Rizzi, F.3    Ghosh, T.C.4    Bettuzzi, S.5
  • 43
    • 33746807366 scopus 로고    scopus 로고
    • Role of the Arabidopsis DNA glycosylase/lyase ROS1 in active DNA demethylation
    • Agius, F., Kapoor, A., and Zhu, J. K. (2006) Role of the Arabidopsis DNA glycosylase/lyase ROS1 in active DNA demethylation. Proc. Natl. Acad. Sci. U.S.A. 103, 11796-11801
    • (2006) Proc. Natl. Acad. Sci. U.S.A. , vol.103 , pp. 11796-11801
    • Agius, F.1    Kapoor, A.2    Zhu, J.K.3
  • 44
    • 26944485107 scopus 로고    scopus 로고
    • Preventing transcriptional gene silencing by active DNA demethylation
    • Kapoor, A., Agius, F., and Zhu, J. K. (2005) Preventing transcriptional gene silencing by active DNA demethylation. FEBS Lett. 579, 5889-5898
    • (2005) FEBS Lett. , vol.579 , pp. 5889-5898
    • Kapoor, A.1    Agius, F.2    Zhu, J.K.3
  • 45
    • 0028934977 scopus 로고
    • Mechanisms of DNA demethylation in chicken embryos: Purification and properties of a 5-methylcytosine-DNA glycosylase
    • Jost, J. P., Siegmann, M., Sun, L., and Leung, R. (1995) Mechanisms of DNA demethylation in chicken embryos: purification and properties of a 5-methylcytosine-DNA glycosylase. J. Biol. Chem. 270, 9734-9739
    • (1995) J. Biol. Chem. , vol.270 , pp. 9734-9739
    • Jost, J.P.1    Siegmann, M.2    Sun, L.3    Leung, R.4
  • 46
    • 0034625141 scopus 로고    scopus 로고
    • 5-Methylcytosine-DNA glycosylase activity is present in a cloned G/T mismatch DNA glycosylase associated with the chicken embryo DNA demethylation complex
    • Zhu, B., Zheng, Y., Hess, D., Angliker, H., Schwarz, S., Siegmann, M., Thiry, S., and Jost, J. P. (2000) 5-Methylcytosine-DNA glycosylase activity is present in a cloned G/T mismatch DNA glycosylase associated with the chicken embryo DNA demethylation complex. Proc. Natl. Acad. Sci. U.S.A. 97, 5135-5139
    • (2000) Proc. Natl. Acad. Sci. U.S.A. , vol.97 , pp. 5135-5139
    • Zhu, B.1    Zheng, Y.2    Hess, D.3    Angliker, H.4    Schwarz, S.5    Siegmann, M.6    Thiry, S.7    Jost, J.P.8
  • 47
    • 0029057905 scopus 로고
    • Mechanism of active DNA demethylation during embryonic development and cellular differentiation in vertebrates
    • Jost, J. P., and Jost, Y. C. (1995) Mechanism of active DNA demethylation during embryonic development and cellular differentiation in vertebrates. Gene 157, 265-266
    • (1995) Gene , vol.157 , pp. 265-266
    • Jost, J.P.1    Jost, Y.C.2
  • 48
    • 59849090498 scopus 로고    scopus 로고
    • TAF12 recruits Gadd45a and the nucleotide excision repair complex to the promoter of rRNA genes leading to active DNA demethylation
    • Schmitz, K. M., Schmitt, N., Hoffmann-Rohrer, U., Schäfer, A., Grummt, I., and Mayer, C. (2009) TAF12 recruits Gadd45a and the nucleotide excision repair complex to the promoter of rRNA genes leading to active DNA demethylation. Mol. Cell 33, 344-353
    • (2009) Mol. Cell , vol.33 , pp. 344-353
    • Schmitz, K.M.1    Schmitt, N.2    Hoffmann-Rohrer, U.3    Schäfer, A.4    Grummt, I.5    Mayer, C.6
  • 49
    • 84865377934 scopus 로고    scopus 로고
    • XPG and XPF endonucleases trigger chromatin looping and DNA demethylation for accurate expression of activated genes
    • Le May, N., Fradin, D., Iltis, I., Bougnères, P., and Egly, J. M. (2012) XPG and XPF endonucleases trigger chromatin looping and DNA demethylation for accurate expression of activated genes. Mol. Cell 47, 622-632
    • (2012) Mol. Cell , vol.47 , pp. 622-632
    • Le May, N.1    Fradin, D.2    Iltis, I.3    Bougnères, P.4    Egly, J.M.5
  • 50
    • 0037068433 scopus 로고    scopus 로고
    • AlkB-mediated oxidative demethylation reverses DNA damage in Escherichia coli
    • Falnes, P. O., Johansen, R. F., and Seeberg, E. (2002) AlkB-mediated oxidative demethylation reverses DNA damage in Escherichia coli. Nature 419, 178-182
    • (2002) Nature , vol.419 , pp. 178-182
    • Falnes, P.O.1    Johansen, R.F.2    Seeberg, E.3
  • 51
    • 37549024986 scopus 로고    scopus 로고
    • Kinetic studies of Escherichia coli AlkB using a new fluorescence-based assay for DNA demethylation
    • Roy, T. W., and Bhagwat, A. S. (2007) Kinetic studies of Escherichia coli AlkB using a new fluorescence-based assay for DNA demethylation. Nucleic Acids Res. 35, e147
    • (2007) Nucleic Acids Res. , vol.35
    • Roy, T.W.1    Bhagwat, A.S.2
  • 52
    • 79955538247 scopus 로고    scopus 로고
    • Hydroxylation of 5-methylcytosine by TET1 promotes activeDNAdemethylation in the adult brain
    • Guo, J. U., Su, Y., Zhong, C., Ming, G. L., and Song, H. (2011) Hydroxylation of 5-methylcytosine by TET1 promotes activeDNAdemethylation in the adult brain. Cell 145, 423-434
    • (2011) Cell , vol.145 , pp. 423-434
    • Guo, J.U.1    Su, Y.2    Zhong, C.3    Ming, G.L.4    Song, H.5
  • 53
    • 77649104794 scopus 로고    scopus 로고
    • Reprogramming towards pluripotency requires AID-dependent DNA demethylation
    • Bhutani, N., Brady, J. J., Damian, M., Sacco, A., Corbel, S. Y., and Blau, H. M. (2010) Reprogramming towards pluripotency requires AID-dependent DNA demethylation. Nature 463, 1042-1047
    • (2010) Nature , vol.463 , pp. 1042-1047
    • Bhutani, N.1    Brady, J.J.2    Damian, M.3    Sacco, A.4    Corbel, S.Y.5    Blau, H.M.6
  • 54
    • 0037157138 scopus 로고    scopus 로고
    • 5-Methyldeoxycytidine monophosphate deaminase and 5-methylcytidyl-DNA deaminase activities are present in human mature sperm cells
    • Jost, J. P., Thiry, S., and Siegmann, M. (2002) 5-Methyldeoxycytidine monophosphate deaminase and 5-methylcytidyl-DNA deaminase activities are present in human mature sperm cells. FEBS Lett. 519, 128-134
    • (2002) FEBS Lett. , vol.519 , pp. 128-134
    • Jost, J.P.1    Thiry, S.2    Siegmann, M.3


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