The zebrafish KLF gene family

Blood

Volumn 98, Issue 6, 2001, Pages 1792-1801

  Oates, Andrew C ^a,b,c,d,e   Pratt, Stephen J ^a,b,c,d,e   Vail, Brenda ^a,b,c,d,e   Yan, Yi Iin ^a,b,c,d,e   Ho, Robert K ^a,b,c,d,e   Johnson, Stephen L ^a,b,c,d,e   Postlethwait, John H ^a,b,c,d,e   Zon, Leonard I ^a,b,c,d,e  

^a BOSTON CHILDREN S HOSPITAL   (United States)

^b ROYAL MELBOURNE HOSPITAL   (Australia)

^c PRINCETON UNIVERSITY   (United States)

^d WASHINGTON UNIVERSITY SCHOOL OF MEDICINE   (United States)

^e UNIVERSITY OF OREGON   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ERYTHROID KRUPPEL LIKE FACTOR; GENE PRODUCT; KRUPPEL LIKE FACTOR; UNCLASSIFIED DRUG;

AMINO ACID SEQUENCE; AMINO TERMINAL SEQUENCE; ANIMAL TISSUE; ARTICLE; BLOOD VESSEL FUNCTION; CELL DIFFERENTIATION; CONTROLLED STUDY; DEVELOPMENT; DNA SEQUENCE; EMBRYO; EPIDERMIS; GENE IDENTIFICATION; GENE ISOLATION; GENE MAPPING; GENE STRUCTURE; HEMATOPOIESIS; MULTIGENE FAMILY; NONHUMAN; PRIORITY JOURNAL; PROTEIN DOMAIN; TRANSCRIPTION REGULATION; ZEBRA FISH;

DANIO RERIO;

EID: 0035885967     PISSN: 00064971     EISSN: None     Source Type: Journal    
DOI: 10.1182/blood.V98.6.1792     Document Type: Article

References (70)

1. Licht JD, Grossel MJ, Figge J, Hansen UM. Drosophila Kruppel protein is a transcriptional repressor. Nature. 1990;346:76-79.
2. Schuh R, Aicher W, Gaul U, et al. A conserved family of nuclear proteins containing structural elements of the finger protein encoded by Kruppel, a Drosophila segmentation gene. Cell. 1986;47:1025-1032.
3. Stanojevic D, Hoey T, Levine M. Sequence-specific DNA-binding activities of the gap proteins encoded by hunchback and Kruppel in Drosophila. Nature. 1989;341:331-335.
4. Turner J, Crossley M. Mammalian Kruppel-like transcription factors: more than just a pretty finger. Trends Biochem Sci. 1999;24:236-240.
5. Perkins AC, Gaensler KM, Orkin SH. Silencing of human fetal globin expression is impaired in the absence of the adult beta-globin gene activator protein EKLF. Proc Natl Acad Sci U S A. 1996;93:12267-12271.
6. Nuez B, Michalovich D, Bygrave A, Ploemacher R, Grosveld F. Defective haematopoiesis in fetal liver resulting from inactivation of the EKLF gene. Nature. 1995;375:316-318.
7. Kuo CT, Veselits ML, Leiden JM. LKLF: a transcriptional regulator of single-positive T cell quiescence and survival. Science. 1997;277:1986-1990.
8. Kuo CT, Veselits ML, Barton KP, Lu MM, Clendenin C, Leiden JM. The LKLF transcription factor is required for normal tunica media formation and blood vessel stabilization during murine embryogenesis. Genes Dev. 1997;11:2996-3006.
9. Segre JA, Bauer C, Fuchs E. Klf4 is a transcription factor required for establishing the barrier function of the skin. Nat Genet. 1999;22:356-360.
10. Ruppert JM, Kinzler KW, Wong AJ, et al. The GLI-Kruppel family of human genes. Mol Cell Biol. 1988;8:3104-3113.
11. Klevit RE. Recognition of DNA by Cys2, His2 zinc fingers. Science. 1991;253:1367, 1393.
12. Miller IJ, Bieker JJ. A novel, erythroid cell-specific murine transcription factor that binds to the CACCC element and is related to the Kruppel family of nuclear proteins. Mol Cell Biol. 1993;13:2776-2786.
13. Crossley M, Whitelaw E, Perkins A, Williams G, Fujiwara Y, Orkin SH. Isolation and characterization of the cDNA encoding BKLF/TEF-2, a major CACCC-box-binding protein in erythroid cells and selected other cells. Mol Cell Biol. 1996;16:1695-1705.
14. Garrett-Sinha LA, Eberspaecher H, Seldin MF, de Crombrugghe B. A gene for a novel zinc-finger protein expressed in differentiated epithelial cells and transiently in certain mesenchymal cells. J Biol Chem. 1996;271:31384-31390.
15. Yet SF, McA'Nulty MM, Folta SC, et al. Human EZF, a Kruppel-like zinc finger protein, is expressed in vascular endothelial cells and contains transcriptional activation and repression domains. J Biol Chem. 1998;273:1026-1031.
16. van Vliet J, Turner J, Crossley M. Human Kruppel-like factor 8: a CACCC-box binding protein that associates with CtBP and represses transcription. Nucleic Acids Res. 2000;28:1955-1962.
17. Shields JM, Yang VW. Identification of the DNA sequence that interacts with the gut-enriched Kruppel-like factor. Nucleic Acids Res. 1998;26:796-802.
18. Bieker JJ, Southwood CM. The erythroid Kruppel-like factor transactivation domain is a critical component for cell-specific inducibility of a beta-globin promoter. Mol Cell Biol. 1995;15:852-860.
19. Chen X, Bieker JJ. Erythroid Kruppel-like factor (EKLF) contains a multifunctional transcriptional activation domain important for inter- and intramolecular interactions. EMBO J. 1996;15:5888-5896.
20. Matsumoto N, Laub F, Aldabe R, et al. Cloning the cDNA for a new human zinc finger protein defines a group of closely related Kruppel-like transcription factors. J Biol Chem. 1998;273:28229-28237.
21. Ratziu V, Lalazar A, Wong L, et al. Zf9, a Kruppel-like transcription factor up-regulated in vivo during early hepatic fibrosis. Proc Natl Acad Sci U S A. 1998;95:9500-9505.
22. Turner J, Crossley M, Cloning and characterization of mCtBP2, a co-repressor that associates with basic Kruppel-like factor and other mammalian transcriptional regulators. EMBO J. 1998;17:5129-5140.
23. Geiman DE, Ton-That H, Johnson JM, Yang VW. Transactivation and growth suppression by the gut-enriched Kruppel-like factor (Kruppel-like factor 4) are dependent on acidic amino acid residues and protein-protein interaction. Nucleic Acids Res. 2000;28:1106-1113.
24. Zhang W, Bieker JJ. Acetylation and modulation of erythroid Kruppel-like factor (EKLF) activity by interaction with histone acetyltransferases. Proc Natl Acad Sci U S A. 1998;95:9855-9860.
25. Ouyang L, Chen X, Bieker JJ. Regulation of erythroid Kruppel-like factor (EKLF) transcriptional activity by phosphorylation of a protein kinase casein kinase II site within its interaction domain. J Biol Chem. 1998;273:23019-23025.
26. Perkins AC, Sharpe AH, Orkin SH. Lethal betathalassaemia in mice lacking the erythroid CACCC-transcription factor EKLF. Nature. 1995;375:318-322.
27. Weinstein BM, Schier AF, Abdelilah S, et al. Hematopoietic mutations in the zebrafish. Development. 1996;123:303-309.
28. Ransom DG, Haffter P, Odenthal J, et al. Characterization of zebrafish mutants with defects in embryonic hematopoiesis. Development. 1996;123:311-319.
29. Bellefroid EJ, Lecocq PJ, Benhida A, Poncelet DA, Belayew A, Martial JA. The human genome contains hundreds of genes coding for finger proteins of the Kruppel type. DNA. 1989;8:377-387.
30. Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG. The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 1997;25:4876-4882.
31. Thompson JD, Higgins DG, Gibson TJ. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 1994;22:4673-4680.
32. Johnson SL, Gates MA, Johnson M, et al. Centromere-linkage analysis and consolidation of the zebrafish genetic map. Genetics. 1996;142:1277-1288.
33. Johnson SL, Africa D, Horne S, Postlethwait JH. Half-tetrad analysis in zebrafish: mapping the ros mutation and the centromere of linkage group I. Genetics. 1995;139:1727-1735.
34. Postlethwait JH, Yan YL, Gates MA, et al. Vertebrate genome evolution and the zebrafish gene map [published erratum appears in Nat Genet. 1998;19:303]. Nat Genet. 1998;18:345-349.
35. Kwok C, Korn RM, Davis ME, et al. Characterization of whole genome radiation hybrid mapping resources for non-mammalian vertebrates. Nucleic Acids Res. 1998;26:3562-3566.
36. Schulte-Merker S, Ho RK, Herrmann BG, Nusslein-Volhard C. The protein product of the zebrafish homologue of the mouse T gene is expressed in nuclei of the germ ring and the notochord of the early embryo. Development. 1992;116:1021-1032.
37. Oates AC, Brownlie A, Pratt SJ, et al. Gene duplication of zebrafish JAK2 homologs is accompanied by divergent embryonic expression patterns: only jak2a is expressed during erythropoiesis. Blood. 1999;94:2622-2636.
38. Anderson KP, Kern CB, Crable SC, Lingrel JB. Isolation of a gene encoding a functional zinc finger protein homologous to erythroid Kruppel-like factor: identification of a new multigene family. Mol Cell Biol. 1995;15:5957-5965.
39. Shields JM, Christy RJ, Yang VW. Identification and characterization of a gene encoding a gutenriched Kruppel-like factor expressed during growth arrest. J Biol Chem. 1996;271:20009-20017.
40. Brownlie A, Donovan A, Pratt SJ, et al. Positional cloning of the zebrafish sauternes gene: a model for congenital sideroblastic anaemia. Nat Genet. 1998;20:244-250.
41. Donovan A, Brownlie A, Zhou Y, et al. Positional cloning of zebrafish ferroportin1 identifies a conserved vertebrate iron exporter. Nature. 2000;403:776-781.
42. Childs S, Weinstein BM, Mohideen MA, Donohue S, Bonkovsky H, Fishman MC. Zebrafish dracula encodes ferrochelatase and its mutation provides a model for erythropoietic protoporphyria. Curr Biol. 2000;10:1001-1004.
43. Wang H, Long Q, Marty SD, Sassa S, Lin S. A zebrafish model for hepatoerythropoietic porphyria. Nat Genet. 1998;20:239-243.
44. Liao EC, Paw BH, Peters LL, et al. Hereditary spherocytosis in zebrafish riesling illustrates evolution of erythroid beta-spectrin structure, and function in red cell morphogenesis and membrane stability. Development. 2000;127:5123-5132.
45. Griffin KJ, Amacher SL, Kimmel CB, Kimelman D. Molecular identification of spadetail: regulation of zebrafish trunk and tail mesoderm formation by T-box genes. Development. 1998;125:3379-3388.
46. Amores A, Force A, Yan Y-L, et al. Zebrafish hox clusters and vertebrate genome evolution. Science. 1998;282:1711-1714.
47. Gates MA, Kim L, Egan ES, et al. A genetic linkage map for zebrafish: comparative analysis and localization of genes and expressed sequences. Genome Res. 1999;9:334-347.
48. Woods IG, Kelly PD, Chu F, et al. A comparative map of the Zebrafish genome. Genome Res. 2000;10:1903-1914.
49. Al-Adhami MA, Kunz YW. Ontogenesis of hematopoietic sites in Brachydanio rerio (Hamilton-Buchanan) (Teleostei). Cell Growth Differ. 1977;19:171-179.
50. Detrich HW 3rd, Kieran MW, Chan FY, et al. Intraembryonic hematopoietic cell migration during vertebrate development. Proc Natl Acad Sci U S A. 1995;92:10713-10717.
51. Thompson MA, Ransom DG, Pratt SJ, et al. The cloche and spadetail genes differentially affect hematopoiesis and vasculogenesis. Dev Biol. 1998;197:248-269.
52. Quinkertz A, Campos-Ortega JA. A new beta-globin gene from the zebrafish, betaE1, and its pattern of transcription during embryogenesis. Dev Genes Evol. 1999;209:126-131.
53. Liao EC, Paw BH, Oates AC, Pratt SJ, Postlethwait JH, Zon LI. SCL/Tal-1 transcription factor acts downstream of cloche to specify hematopoietic and vascular progenitors in zebrafish. Genes Dev. 1998;12:621-626.
54. Liao W, Bisgrove BW, Sawyer H, et al. The zebrafish gene cloche acts upstream of a flk-1 homologue to regulate endothelial cell differentiation. Development. 1997;124:381-389.
55. Stainier DY, Weinstein BM, Detrich HW 3rd, Zon LI, Fishman MC. Cloche, an early acting zebrafish gene, is required by both the endothelial and hematopoietic lineages. Development. 1995;121:3141-3150.
56. Parker L, Stainier DY. Cell-autonomous and nonautonomous requirements for the zebrafish gene cloche in hematopoiesis. Development. 1999;126:2643-2651.
57. Holder N, Hill J. Retinoic acid modifies development of the midbrain-hindbrain border and affects cranial ganglion formation in zebrafish embryos. Development. 1991;113:1159-1170.
58. Shields JM, Yang VW. Two potent nuclear localization signals in the gut-enriched Kruppel-like factor define a subfamily of closely related Kruppel proteins. J Biol Chem. 1997;272:18504-18507.
59. Brent R, Finley RL Jr. Understanding gene and allele function with two-hybrid methods. Annu Rev Genet. 1997;31:663-704.
60. Long Q, Meng A, Wang H, Jessen JR, Farrell MJ, Lin S. GATA-1 expression pattern can be recapitulated in living transgenic zebrafish using GFP reporter gene. Development. 1997;124:4105-4111.
61. Asano H, Li XS, Stamatoyannopoulos G. FKLF, a novel Kruppel-like factor that activates human embryonic and fetal beta-like globin genes. Mol Cell Biol. 1999;19:3571-3579.
62. Asano H, Li XS, Stamatoyannopoulos G. FKLF-2: a novel Kruppel-like transcriptional factor that activates globin and other erythroid lineage genes. Blood. 2000;95:3578-3584.
63. Ton-That H, Kaestner KH, Shields JM, Mahatanankoon CS, Yang VW. Expression of the gutenriched Kruppel-like factor gene during development and intestinal tumorigenesis. FEBS Lett. 1997;419:239-243.
64. Nemes Z, Steinert PM. Bricks and mortar of the epidermal barrier. Exp Mol Med. 1999;31:5-19.
65. Grandel H, Schulte-Merker S. The development of the paired fins in the zebrafish (Danio rerio). Mech Dev. 1998;79:99-120.
66. Nasevicius A, Ekker SC. Effective targeted gene 'knockdown' in zebrafish [in process citation]. Nat Genet. 2000;26:216-220.
67. Kawahara A, Dawid IB. Expression of the Kruppel-like zinc finger gene biklf during zebrafish development. Mech Dev. 2000;97:173-176.
68. Rubinstein AL, Lee D, Luo R, Henion PD, Halpern ME. Genes dependent on zebrafish cyclops function identified by AFLP differential gene expression screen. Genesis. 2000;26:86-97.
69. Shimoda N, Knapik EW, Ziniti J, et al. Zebrafish genetic map with 2000 microsatellite markers. Genomics. 1999;58:219-232.
70. Page RDM. University of Glasgow. Treeview. Available at: http://taxonomy.zoology.gla.ac.uk/rod/treeview/treeview.html. Accessed November 1998.