메뉴 건너뛰기




Volumn 78, Issue 5, 2014, Pages 772-782

The potential for manipulating RNA with pentatricopeptide repeat proteins

Author keywords

PPR proteins; PUF proteins; RNA binding; sequence specific; synthetic biology; transcription activator like effectors

Indexed keywords

AMINO ACIDS; NUCLEOTIDES; PLANTS (BOTANY); PROTEINS;

EID: 84901620558     PISSN: 09607412     EISSN: 1365313X     Source Type: Journal    
DOI: 10.1111/tpj.12377     Document Type: Article
Times cited : (60)

References (83)
  • 1
    • 84877677064 scopus 로고    scopus 로고
    • Classification and comparison of small RNAs from plants
    • Axtell, M.J., (2013) Classification and comparison of small RNAs from plants. Annu. Rev. Plant Biol. 64, 137-159.
    • (2013) Annu. Rev. Plant Biol. , vol.64 , pp. 137-159
    • Axtell, M.J.1
  • 2
    • 84887026856 scopus 로고    scopus 로고
    • Structure of a PLS-class pentatricopeptide repeat protein provides insights into mechanism of RNA recognition
    • Ban, T., Ke, J., Chen, R., Gu, X., Tan, M.H., Zhou, X.E., Kang, Y., Melcher, K., Zhu, J.K., and, Xu, H.E., (2013) Structure of a PLS-class pentatricopeptide repeat protein provides insights into mechanism of RNA recognition. J. Biol. Chem. 288, 31540-31548.
    • (2013) J. Biol. Chem. , vol.288 , pp. 31540-31548
    • Ban, T.1    Ke, J.2    Chen, R.3    Gu, X.4    Tan, M.H.5    Zhou, X.E.6    Kang, Y.7    Melcher, K.8    Zhu, J.K.9    Xu, H.E.10
  • 3
    • 84866145891 scopus 로고    scopus 로고
    • A combinatorial amino acid code for RNA recognition by pentatricopeptide repeat proteins
    • Barkan, A., Rojas, M., Fujii, S., Yap, A., Chong, Y.S., Bond, C.S., and, Small, I., (2012) A combinatorial amino acid code for RNA recognition by pentatricopeptide repeat proteins. PLoS Genet. 8, e1002910.
    • (2012) PLoS Genet. , vol.8
    • Barkan, A.1    Rojas, M.2    Fujii, S.3    Yap, A.4    Chong, Y.S.5    Bond, C.S.6    Small, I.7
  • 4
    • 50249171238 scopus 로고    scopus 로고
    • The pentatricopeptide repeat protein PPR5 stabilizes a specific tRNA precursor in maize chloroplasts
    • Beick, S., Schmitz-Linneweber, C., Williams-Carrier, R., Jensen, B., and, Barkan, A., (2008) The pentatricopeptide repeat protein PPR5 stabilizes a specific tRNA precursor in maize chloroplasts. Mol. Cell. Biol. 28, 5337-5347.
    • (2008) Mol. Cell. Biol. , vol.28 , pp. 5337-5347
    • Beick, S.1    Schmitz-Linneweber, C.2    Williams-Carrier, R.3    Jensen, B.4    Barkan, A.5
  • 5
  • 7
    • 79952314299 scopus 로고    scopus 로고
    • Ubiquitination of mRNA cycling sequence binding protein from Leishmania donovani (LdCSBP) modulates the RNA endonuclease activity of its Smr domain
    • Bhandari, D., Guha, K., Bhaduri, N., and, Saha, P., (2011) Ubiquitination of mRNA cycling sequence binding protein from Leishmania donovani (LdCSBP) modulates the RNA endonuclease activity of its Smr domain. FEBS Lett. 585, 809-813.
    • (2011) FEBS Lett. , vol.585 , pp. 809-813
    • Bhandari, D.1    Guha, K.2    Bhaduri, N.3    Saha, P.4
  • 8
    • 80055086282 scopus 로고    scopus 로고
    • The bicoid stability factor controls polyadenylation and expression of specific mitochondrial mRNAs in Drosophila melanogaster
    • Bratic, A., Wredenberg, A., Gronke, S., et al. (2011) The bicoid stability factor controls polyadenylation and expression of specific mitochondrial mRNAs in Drosophila melanogaster. PLoS Genet. 7, e1002324.
    • (2011) PLoS Genet. , vol.7
    • Bratic, A.1    Wredenberg, A.2    Gronke, S.3
  • 11
    • 18444383371 scopus 로고    scopus 로고
    • Protein families and RNA recognition
    • Chen, Y., and, Varani, G., (2005) Protein families and RNA recognition. FEBS J. 272, 2088-2097.
    • (2005) FEBS J. , vol.272 , pp. 2088-2097
    • Chen, Y.1    Varani, G.2
  • 12
    • 56049091246 scopus 로고    scopus 로고
    • Cell-free selection of RNA-binding proteins using in vitro compartmentalization
    • Chen, Y., Mandic, J., and, Varani, G., (2008) Cell-free selection of RNA-binding proteins using in vitro compartmentalization. Nucleic Acids Res. 36, e128.
    • (2008) Nucleic Acids Res. , vol.36
    • Chen, Y.1    Mandic, J.2    Varani, G.3
  • 13
    • 33748784359 scopus 로고    scopus 로고
    • Engineering RNA sequence specificity of Pumilio repeats
    • Cheong, C.G., and, Hall, T.M., (2006) Engineering RNA sequence specificity of Pumilio repeats. Proc. Natl Acad. Sci. USA 103, 13635-13639.
    • (2006) Proc. Natl Acad. Sci. USA , vol.103 , pp. 13635-13639
    • Cheong, C.G.1    Hall, T.M.2
  • 14
    • 84869419167 scopus 로고    scopus 로고
    • Engineering RNA endonucleases with customized sequence specificities
    • Choudhury, R., Tsai, Y.S., Dominguez, D., Wang, Y., and, Wang, Z., (2012) Engineering RNA endonucleases with customized sequence specificities. Nat. Commun. 3, 1147.
    • (2012) Nat. Commun. , vol.3 , pp. 1147
    • Choudhury, R.1    Tsai, Y.S.2    Dominguez, D.3    Wang, Y.4    Wang, Z.5
  • 16
    • 84885147813 scopus 로고    scopus 로고
    • Systematic study of subcellular localization of Arabidopsis PPR proteins confirms a massive targeting to organelles
    • Colcombet, J., Lopez-Obando, M., Heurtevin, L., Bernard, C., Martin, K., Berthome, R., and, Lurin, C., (2013) Systematic study of subcellular localization of Arabidopsis PPR proteins confirms a massive targeting to organelles. RNA Biol. 10, 1557-1575.
    • (2013) RNA Biol. , vol.10 , pp. 1557-1575
    • Colcombet, J.1    Lopez-Obando, M.2    Heurtevin, L.3    Bernard, C.4    Martin, K.5    Berthome, R.6    Lurin, C.7
  • 17
    • 84873729095 scopus 로고    scopus 로고
    • Multiplex genome engineering using CRISPR/Cas systems
    • Cong, L., Ran, F.A., Cox, D., et al. (2013) Multiplex genome engineering using CRISPR/Cas systems. Science, 339, 819-823.
    • (2013) Science , vol.339 , pp. 819-823
    • Cong, L.1    Ran, F.A.2    Cox, D.3
  • 18
    • 80053159210 scopus 로고    scopus 로고
    • Targeted translational regulation using the PUF protein family scaffold
    • Cooke, A., Prigge, A., Opperman, L., and, Wickens, M., (2011) Targeted translational regulation using the PUF protein family scaffold. Proc. Natl Acad. Sci. USA 108, 15870-15875.
    • (2011) Proc. Natl Acad. Sci. USA , vol.108 , pp. 15870-15875
    • Cooke, A.1    Prigge, A.2    Opperman, L.3    Wickens, M.4
  • 19
    • 84885108311 scopus 로고    scopus 로고
    • The Rf and Rf-like PPR in higher plants, a fast-evolving subclass of PPR genes
    • Dahan, J., and, Mireau, H., (2013) The Rf and Rf-like PPR in higher plants, a fast-evolving subclass of PPR genes. RNA Biol. 10, 1469-1476.
    • (2013) RNA Biol. , vol.10 , pp. 1469-1476
    • Dahan, J.1    Mireau, H.2
  • 20
    • 79954580272 scopus 로고    scopus 로고
    • Current prospects for RNA interference-based therapies
    • Davidson, B.L., and, McCray, P.B. Jr, (2011) Current prospects for RNA interference-based therapies. Nat. Rev. Genet. 12, 329-340.
    • (2011) Nat. Rev. Genet. , vol.12 , pp. 329-340
    • Davidson, B.L.1    Mccray Jr., P.B.2
  • 21
    • 0033200316 scopus 로고    scopus 로고
    • Translation driven by an eIF4G core domain in vivo
    • De Gregorio, E., Preiss, T., and, Hentze, M.W., (1999) Translation driven by an eIF4G core domain in vivo. EMBO J. 18, 4865-4874.
    • (1999) EMBO J. , vol.18 , pp. 4865-4874
    • De Gregorio, E.1    Preiss, T.2    Hentze, M.W.3
  • 22
    • 79960671724 scopus 로고    scopus 로고
    • Specific and modular binding code for cytosine recognition in Pumilio/FBF (PUF) RNA-binding domains
    • Dong, S., Wang, Y., Cassidy-Amstutz, C., Lu, G., Bigler, R., Jezyk, M.R., Li, C., Hall, T.M., and, Wang, Z., (2011) Specific and modular binding code for cytosine recognition in Pumilio/FBF (PUF) RNA-binding domains. J. Biol. Chem. 286, 26732-26742.
    • (2011) J. Biol. Chem. , vol.286 , pp. 26732-26742
    • Dong, S.1    Wang, Y.2    Cassidy-Amstutz, C.3    Lu, G.4    Bigler, R.5    Jezyk, M.R.6    Li, C.7    Hall, T.M.8    Wang, Z.9
  • 23
    • 0035917508 scopus 로고    scopus 로고
    • Structure of Pumilio reveals similarity between RNA and peptide binding motifs
    • Edwards, T.A., Pyle, S.E., Wharton, R.P., and, Aggarwal, A.K., (2001) Structure of Pumilio reveals similarity between RNA and peptide binding motifs. Cell, 105, 281-289.
    • (2001) Cell , vol.105 , pp. 281-289
    • Edwards, T.A.1    Pyle, S.E.2    Wharton, R.P.3    Aggarwal, A.K.4
  • 24
    • 77955154599 scopus 로고    scopus 로고
    • Nuclearly encoded splicing factors implicated in RNA splicing in higher plant organelles
    • Falcon de Longevialle, A., Small, I.D., and, Lurin, C., (2010) Nuclearly encoded splicing factors implicated in RNA splicing in higher plant organelles. Mol. Plant 3, 691-705.
    • (2010) Mol. Plant , vol.3 , pp. 691-705
    • Falcon De Longevialle, A.1    Small, I.D.2    Lurin, C.3
  • 25
    • 84857198283 scopus 로고    scopus 로고
    • Modular recognition of nucleic acids by PUF, TALE and PPR proteins
    • Filipovska, A., and, Rackham, O., (2012) Modular recognition of nucleic acids by PUF, TALE and PPR proteins. Mol. BioSyst. 8, 699-708.
    • (2012) Mol. BioSyst. , vol.8 , pp. 699-708
    • Filipovska, A.1    Rackham, O.2
  • 27
    • 79957886185 scopus 로고    scopus 로고
    • The evolution of RNA editing and pentatricopeptide repeat genes
    • Fujii, S., and, Small, I., (2011) The evolution of RNA editing and pentatricopeptide repeat genes. New Phytol. 191, 37-47.
    • (2011) New Phytol. , vol.191 , pp. 37-47
    • Fujii, S.1    Small, I.2
  • 28
    • 79952166885 scopus 로고    scopus 로고
    • Selection patterns on restorer-like genes reveal a conflict between nuclear and mitochondrial genomes throughout angiosperm evolution
    • Fujii, S., Bond, C.S., and, Small, I.D., (2011) Selection patterns on restorer-like genes reveal a conflict between nuclear and mitochondrial genomes throughout angiosperm evolution. Proc. Natl Acad. Sci. USA, 108 1723-1728.
    • (2011) Proc. Natl Acad. Sci. USA , vol.108 , pp. 1723-1728
    • Fujii, S.1    Bond, C.S.2    Small, I.D.3
  • 29
    • 84884686240 scopus 로고    scopus 로고
    • Mutagenesis of individual pentatricopeptide repeat motifs affects RNA binding activity and reveals functional partitioning of Arabidopsis PROTON GRADIENT REGULATION3
    • Fujii, S., Sato, N., and, Shikanai, T., (2013) Mutagenesis of individual pentatricopeptide repeat motifs affects RNA binding activity and reveals functional partitioning of Arabidopsis PROTON GRADIENT REGULATION3. Plant Cell, 25, 3079-3088.
    • (2013) Plant Cell , vol.25 , pp. 3079-3088
    • Fujii, S.1    Sato, N.2    Shikanai, T.3
  • 32
    • 62249133709 scopus 로고    scopus 로고
    • Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals
    • Guttman, M., Amit, I., Garber, M., et al,. (2009) Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals. Nature, 458, 223-227.
    • (2009) Nature , vol.458 , pp. 223-227
    • Guttman, M.1    Amit, I.2    Garber, M.3
  • 34
    • 73249140998 scopus 로고    scopus 로고
    • A study of new Arabidopsis chloroplast RNA editing mutants reveals general features of editing factors and their target sites
    • Hammani, K., Okuda, K., Tanz, S.K., Chateigner-Boutin, A.L., Shikanai, T., and, Small, I., (2009) A study of new Arabidopsis chloroplast RNA editing mutants reveals general features of editing factors and their target sites. Plant Cell, 21, 3686-3699.
    • (2009) Plant Cell , vol.21 , pp. 3686-3699
    • Hammani, K.1    Okuda, K.2    Tanz, S.K.3    Chateigner-Boutin, A.L.4    Shikanai, T.5    Small, I.6
  • 35
    • 79953081860 scopus 로고    scopus 로고
    • An Arabidopsis dual-localized pentatricopeptide repeat protein interacts with nuclear proteins involved in gene expression regulation
    • Hammani, K., Gobert, A., Hleibieh, K., Choulier, L., Small, I., and, Giege, P., (2011) An Arabidopsis dual-localized pentatricopeptide repeat protein interacts with nuclear proteins involved in gene expression regulation. Plant Cell, 23, 730-740.
    • (2011) Plant Cell , vol.23 , pp. 730-740
    • Hammani, K.1    Gobert, A.2    Hleibieh, K.3    Choulier, L.4    Small, I.5    Giege, P.6
  • 36
    • 0037062951 scopus 로고    scopus 로고
    • RNA interference
    • Hannon, G.J., (2002) RNA interference. Nature, 418, 244-251.
    • (2002) Nature , vol.418 , pp. 244-251
    • Hannon, G.J.1
  • 37
    • 0037313537 scopus 로고    scopus 로고
    • Genome-wide analysis of RNA-protein interactions illustrates specificity of the mRNA export machinery
    • Hieronymus, H., and, Silver, P.A., (2003) Genome-wide analysis of RNA-protein interactions illustrates specificity of the mRNA export machinery. Nat. Genet. 33, 155-161.
    • (2003) Nat. Genet. , vol.33 , pp. 155-161
    • Hieronymus, H.1    Silver, P.A.2
  • 38
    • 84867071659 scopus 로고    scopus 로고
    • Mitochondrial ribonuclease P structure provides insight into the evolution of catalytic strategies for precursor-tRNA 5' processing
    • Howard, M.J., Lim, W.H., Fierke, C.A., and, Koutmos, M., (2012) Mitochondrial ribonuclease P structure provides insight into the evolution of catalytic strategies for precursor-tRNA 5' processing. Proc. Natl Acad. Sci. USA 109, 16149-16154.
    • (2012) Proc. Natl Acad. Sci. USA , vol.109 , pp. 16149-16154
    • Howard, M.J.1    Lim, W.H.2    Fierke, C.A.3    Koutmos, M.4
  • 39
    • 83755172749 scopus 로고    scopus 로고
    • Evolution of the deaminase fold and multiple origins of eukaryotic editing and mutagenic nucleic acid deaminases from bacterial toxin systems
    • Iyer, L.M., Zhang, D., Rogozin, I.B., and, Aravind, L., (2011) Evolution of the deaminase fold and multiple origins of eukaryotic editing and mutagenic nucleic acid deaminases from bacterial toxin systems. Nucleic Acids Res. 39, 9473-9497.
    • (2011) Nucleic Acids Res. , vol.39 , pp. 9473-9497
    • Iyer, L.M.1    Zhang, D.2    Rogozin, I.B.3    Aravind, L.4
  • 41
    • 49249105375 scopus 로고    scopus 로고
    • Suppression mechanism of mitochondrial ORF79 accumulation by Rf1 protein in BT-type cytoplasmic male sterile rice
    • Kazama, T., Nakamura, T., Watanabe, M., Sugita, M., and, Toriyama, K., (2008) Suppression mechanism of mitochondrial ORF79 accumulation by Rf1 protein in BT-type cytoplasmic male sterile rice. Plant J. 55, 619-628.
    • (2008) Plant J. , vol.55 , pp. 619-628
    • Kazama, T.1    Nakamura, T.2    Watanabe, M.3    Sugita, M.4    Toriyama, K.5
  • 43
    • 84867599386 scopus 로고    scopus 로고
    • Apolipoprotein B mRNA-editing, catalytic polypeptide cytidine deaminases and retroviral restriction
    • Koito, A., and, Ikeda, T., (2012) Apolipoprotein B mRNA-editing, catalytic polypeptide cytidine deaminases and retroviral restriction. Wiley Interdiscip. Rev. RNA 3, 529-541.
    • (2012) Wiley Interdiscip. Rev. RNA , vol.3 , pp. 529-541
    • Koito, A.1    Ikeda, T.2
  • 44
    • 0029615981 scopus 로고
    • Analysis of RNA-binding proteins by in vitro genetic selection: Identification of an amino acid residue important for locking U1A onto its RNA target
    • Laird-Offringa, I.A., and, Belasco, J.G., (1995) Analysis of RNA-binding proteins by in vitro genetic selection: identification of an amino acid residue important for locking U1A onto its RNA target. Proc. Natl Acad. Sci. USA 92, 11859-11863.
    • (1995) Proc. Natl Acad. Sci. USA , vol.92 , pp. 11859-11863
    • Laird-Offringa, I.A.1    Belasco, J.G.2
  • 45
    • 84885170146 scopus 로고    scopus 로고
    • PPR-SMRs: Ancient proteins with enigmatic functions
    • Liu, S., Melonek, J., Boykin, L.M., Small, I., and, Howell, K.A., (2013) PPR-SMRs: ancient proteins with enigmatic functions. RNA Biol. 10, 1501-1510.
    • (2013) RNA Biol. , vol.10 , pp. 1501-1510
    • Liu, S.1    Melonek, J.2    Boykin, L.M.3    Small, I.4    Howell, K.A.5
  • 46
    • 79952460244 scopus 로고    scopus 로고
    • Alternate modes of cognate RNA recognition by human PUMILIO proteins
    • Lu, G., and, Hall, T.M., (2011) Alternate modes of cognate RNA recognition by human PUMILIO proteins. Structure, 19, 361-367.
    • (2011) Structure , vol.19 , pp. 361-367
    • Lu, G.1    Hall, T.M.2
  • 47
    • 4043172772 scopus 로고    scopus 로고
    • Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins reveals their essential role in organelle biogenesis
    • Lurin, C., Andres, C., Aubourg, S., et al,. (2004) Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins reveals their essential role in organelle biogenesis. Plant Cell, 16, 2089-2103.
    • (2004) Plant Cell , vol.16 , pp. 2089-2103
    • Lurin, C.1    Andres, C.2    Aubourg, S.3
  • 49
    • 79953729355 scopus 로고    scopus 로고
    • Plastid biotechnology: Food, fuel, and medicine for the 21st century
    • Maliga, P., and, Bock, R., (2011) Plastid biotechnology: food, fuel, and medicine for the 21st century. Plant Physiol. 155, 1501-1510.
    • (2011) Plant Physiol. , vol.155 , pp. 1501-1510
    • Maliga, P.1    Bock, R.2
  • 50
    • 0035028602 scopus 로고    scopus 로고
    • BSF binds specifically to the bicoid mRNA 3' untranslated region and contributes to stabilization of bicoid mRNA
    • Mancebo, R., Zhou, X., Shillinglaw, W., Henzel, W., and, Macdonald, P.M., (2001) BSF binds specifically to the bicoid mRNA 3' untranslated region and contributes to stabilization of bicoid mRNA. Mol. Cell. Biol. 21, 3462-3471.
    • (2001) Mol. Cell. Biol. , vol.21 , pp. 3462-3471
    • Mancebo, R.1    Zhou, X.2    Shillinglaw, W.3    Henzel, W.4    Macdonald, P.M.5
  • 52
    • 41649092045 scopus 로고    scopus 로고
    • Basis of altered RNA-binding specificity by PUF proteins revealed by crystal structures of yeast Puf4p
    • Miller, M.T., Higgin, J.J., and, Hall, T.M., (2008) Basis of altered RNA-binding specificity by PUF proteins revealed by crystal structures of yeast Puf4p. Nat. Struct. Mol. Biol. 15, 397-402.
    • (2008) Nat. Struct. Mol. Biol. , vol.15 , pp. 397-402
    • Miller, M.T.1    Higgin, J.J.2    Hall, T.M.3
  • 53
    • 77954251055 scopus 로고    scopus 로고
    • PNAzymes that are artificial RNA restriction enzymes
    • Murtola, M., Wenska, M., and, Stromberg, R., (2010) PNAzymes that are artificial RNA restriction enzymes. J. Am. Chem. Soc. 132, 8984-8990.
    • (2010) J. Am. Chem. Soc. , vol.132 , pp. 8984-8990
    • Murtola, M.1    Wenska, M.2    Stromberg, R.3
  • 54
    • 84863957655 scopus 로고    scopus 로고
    • Mechanistic insight into pentatricopeptide repeat proteins as sequence-specific RNA-binding proteins for organellar RNAs in plants
    • Nakamura, T., Yagi, Y., and, Kobayashi, K., (2012) Mechanistic insight into pentatricopeptide repeat proteins as sequence-specific RNA-binding proteins for organellar RNAs in plants. Plant Cell Physiol. 53, 1171-1179.
    • (2012) Plant Cell Physiol. , vol.53 , pp. 1171-1179
    • Nakamura, T.1    Yagi, Y.2    Kobayashi, K.3
  • 56
    • 34250210525 scopus 로고    scopus 로고
    • Imaging dynamics of endogenous mitochondrial RNA in single living cells
    • Ozawa, T., Natori, Y., Sato, M., and, Umezawa, Y., (2007) Imaging dynamics of endogenous mitochondrial RNA in single living cells. Nat. Methods 4, 413-419.
    • (2007) Nat. Methods , vol.4 , pp. 413-419
    • Ozawa, T.1    Natori, Y.2    Sato, M.3    Umezawa, Y.4
  • 58
    • 84878125012 scopus 로고    scopus 로고
    • Site-directed nucleases: A paradigm shift in predictable, knowledge-based plant breeding
    • Podevin, N., Davies, H.V., Hartung, F., Nogue, F., and, Casacuberta, J.M., (2013) Site-directed nucleases: a paradigm shift in predictable, knowledge-based plant breeding. Trends Biotechnol. 31, 375-383.
    • (2013) Trends Biotechnol. , vol.31 , pp. 375-383
    • Podevin, N.1    Davies, H.V.2    Hartung, F.3    Nogue, F.4    Casacuberta, J.M.5
  • 59
    • 78651068887 scopus 로고    scopus 로고
    • Mechanism of RNA stabilization and translational activation by a pentatricopeptide repeat protein
    • Prikryl, J., Rojas, M., Schuster, G., and, Barkan, A., (2011) Mechanism of RNA stabilization and translational activation by a pentatricopeptide repeat protein. Proc. Natl Acad. Sci. USA 108, 415-420.
    • (2011) Proc. Natl Acad. Sci. USA , vol.108 , pp. 415-420
    • Prikryl, J.1    Rojas, M.2    Schuster, G.3    Barkan, A.4
  • 60
    • 84874513053 scopus 로고    scopus 로고
    • Repression of essential chloroplast genes reveals new signaling pathways and regulatory feedback loops in Chlamydomonas
    • Ramundo, S., Rahire, M., Schaad, O., and, Rochaix, J.D., (2013) Repression of essential chloroplast genes reveals new signaling pathways and regulatory feedback loops in Chlamydomonas. Plant Cell, 25, 167-186.
    • (2013) Plant Cell , vol.25 , pp. 167-186
    • Ramundo, S.1    Rahire, M.2    Schaad, O.3    Rochaix, J.D.4
  • 61
    • 84860147226 scopus 로고    scopus 로고
    • Short non-coding RNA fragments accumulating in chloroplasts: Footprints of RNA binding proteins?
    • Ruwe, H., and, Schmitz-Linneweber, C., (2012) Short non-coding RNA fragments accumulating in chloroplasts: footprints of RNA binding proteins? Nucleic Acids Res. 40, 3106-3116.
    • (2012) Nucleic Acids Res. , vol.40 , pp. 3106-3116
    • Ruwe, H.1    Schmitz-Linneweber, C.2
  • 63
    • 84929517488 scopus 로고    scopus 로고
    • A survey of PPR proteins identifies DYW domains like those of land plant RNA editing factors in diverse eukaryotes
    • Schallenberg-Rudinger, M., Lenz, H., Polsakiewicz, M., Gott, J.M., and, Knoop, V., (2013) A survey of PPR proteins identifies DYW domains like those of land plant RNA editing factors in diverse eukaryotes. RNA Biol. 10, 1549-1556.
    • (2013) RNA Biol. , vol.10 , pp. 1549-1556
    • Schallenberg-Rudinger, M.1    Lenz, H.2    Polsakiewicz, M.3    Gott, J.M.4    Knoop, V.5
  • 64
    • 56549095978 scopus 로고    scopus 로고
    • Pentatricopeptide repeat proteins: A socket set for organelle gene expression
    • Schmitz-Linneweber, C., and, Small, I., (2008) Pentatricopeptide repeat proteins: a socket set for organelle gene expression. Trends Plant Sci. 13, 663-670.
    • (2008) Trends Plant Sci. , vol.13 , pp. 663-670
    • Schmitz-Linneweber, C.1    Small, I.2
  • 65
    • 31544432771 scopus 로고    scopus 로고
    • RNA immunoprecipitation and microarray analysis show a chloroplast pentatricopeptide repeat protein to be associated with the 5'-region of mRNAs whose translation it activates
    • Schmitz-Linneweber, C., Williams-Carrier, R., and, Barkan, A., (2005) RNA immunoprecipitation and microarray analysis show a chloroplast pentatricopeptide repeat protein to be associated with the 5'-region of mRNAs whose translation it activates. Plant Cell, 17, 2791-2804.
    • (2005) Plant Cell , vol.17 , pp. 2791-2804
    • Schmitz-Linneweber, C.1    Williams-Carrier, R.2    Barkan, A.3
  • 66
    • 28544448500 scopus 로고    scopus 로고
    • In vitro selection, characterization, and application of deoxyribozymes that cleave RNA
    • Silverman, S.K., (2005) In vitro selection, characterization, and application of deoxyribozymes that cleave RNA. Nucleic Acids Res. 33, 6151-6163.
    • (2005) Nucleic Acids Res. , vol.33 , pp. 6151-6163
    • Silverman, S.K.1
  • 67
    • 0033965922 scopus 로고    scopus 로고
    • The PPR motif - A TPR-related motif prevalent in plant organellar proteins
    • Small, I.D., and, Peeters, N., (2000) The PPR motif-a TPR-related motif prevalent in plant organellar proteins. Trends Biochem. Sci. 25, 46-47.
    • (2000) Trends Biochem. Sci. , vol.25 , pp. 46-47
    • Small, I.D.1    Peeters, N.2
  • 69
    • 84859475178 scopus 로고    scopus 로고
    • Multiple organellar RNA editing factor (MORF) family proteins are required for RNA editing in mitochondria and plastids of plants
    • Takenaka, M., Zehrmann, A., Verbitskiy, D., Kugelmann, M., Hartel, B., and, Brennicke, A., (2012) Multiple organellar RNA editing factor (MORF) family proteins are required for RNA editing in mitochondria and plastids of plants. Proc. Natl Acad. Sci. USA 109, 5104-5109.
    • (2012) Proc. Natl Acad. Sci. USA , vol.109 , pp. 5104-5109
    • Takenaka, M.1    Zehrmann, A.2    Verbitskiy, D.3    Kugelmann, M.4    Hartel, B.5    Brennicke, A.6
  • 70
    • 84878784240 scopus 로고    scopus 로고
    • Improved computational target site prediction for pentatricopeptide repeat RNA editing factors
    • Takenaka, M., Zehrmann, A., Brennicke, A., and, Graichen, K., (2013) Improved computational target site prediction for pentatricopeptide repeat RNA editing factors. PLoS ONE 8, e65343.
    • (2013) PLoS ONE , vol.8
    • Takenaka, M.1    Zehrmann, A.2    Brennicke, A.3    Graichen, K.4
  • 72
    • 62549107493 scopus 로고    scopus 로고
    • Characterization of Raphanus sativus pentatricopeptide repeat proteins encoded by the fertility restorer locus for Ogura cytoplasmic male sterility
    • Uyttewaal, M., Arnal, N., Quadrado, M., Martin-Canadell, A., Vrielynck, N., Hiard, S., Gherbi, H., Bendahmane, A., Budar, F., and, Mireau, H., (2008) Characterization of Raphanus sativus pentatricopeptide repeat proteins encoded by the fertility restorer locus for Ogura cytoplasmic male sterility. Plant Cell, 20, 3331-3345.
    • (2008) Plant Cell , vol.20 , pp. 3331-3345
    • Uyttewaal, M.1    Arnal, N.2    Quadrado, M.3    Martin-Canadell, A.4    Vrielynck, N.5    Hiard, S.6    Gherbi, H.7    Bendahmane, A.8    Budar, F.9    Mireau, H.10
  • 74
    • 0037162703 scopus 로고    scopus 로고
    • Modular recognition of RNA by a human pumilio-homology domain
    • Wang, X., McLachlan, J., Zamore, P.D., and, Hall, T.M., (2002) Modular recognition of RNA by a human pumilio-homology domain. Cell, 110, 501-512.
    • (2002) Cell , vol.110 , pp. 501-512
    • Wang, X.1    McLachlan, J.2    Zamore, P.D.3    Hall, T.M.4
  • 75
    • 33646835190 scopus 로고    scopus 로고
    • Cytoplasmic male sterility of rice with Boro II cytoplasm is caused by a cytotoxic peptide and is restored by two related PPR motif genes via distinct modes of mRNA silencing
    • Wang, Z., Zou, Y., Li, X., et al,. (2006) Cytoplasmic male sterility of rice with Boro II cytoplasm is caused by a cytotoxic peptide and is restored by two related PPR motif genes via distinct modes of mRNA silencing. Plant Cell, 18, 676-687.
    • (2006) Plant Cell , vol.18 , pp. 676-687
    • Wang, Z.1    Zou, Y.2    Li, X.3
  • 76
    • 70350719211 scopus 로고    scopus 로고
    • Engineering splicing factors with designed specificities
    • Wang, Y., Cheong, C.G., Hall, T.M., and, Wang, Z., (2009) Engineering splicing factors with designed specificities. Nat. Methods 6, 825-830.
    • (2009) Nat. Methods , vol.6 , pp. 825-830
    • Wang, Y.1    Cheong, C.G.2    Hall, T.M.3    Wang, Z.4
  • 77
    • 84885898647 scopus 로고    scopus 로고
    • Engineered proteins with Pumilio/fem-3 mRNA binding factor scaffold to manipulate RNA metabolism
    • Wang, Y., Wang, Z., and, Hall, T.M., (2013) Engineered proteins with Pumilio/fem-3 mRNA binding factor scaffold to manipulate RNA metabolism. FEBS J. 280, 3755-3767.
    • (2013) FEBS J. , vol.280 , pp. 3755-3767
    • Wang, Y.1    Wang, Z.2    Hall, T.M.3
  • 78
    • 84874588115 scopus 로고    scopus 로고
    • Elucidation of the RNA recognition code for pentatricopeptide repeat proteins involved in organelle RNA editing in plants
    • Yagi, Y., Hayashi, S., Kobayashi, K., Hirayama, T., and, Nakamura, T., (2013a) Elucidation of the RNA recognition code for pentatricopeptide repeat proteins involved in organelle RNA editing in plants. PLoS ONE, 8, e57286.
    • (2013) PLoS ONE , vol.8
    • Yagi, Y.1    Hayashi, S.2    Kobayashi, K.3    Hirayama, T.4    Nakamura, T.5
  • 79
    • 84929517201 scopus 로고    scopus 로고
    • Pentatricopeptide repeat proteins involved in plant organellar RNA editing
    • Yagi, Y., Tachikawa, M., Noguchi, H., Satoh, S., Obokata, J., and, Nakamura, T., (2013b) Pentatricopeptide repeat proteins involved in plant organellar RNA editing. RNA Biol. 10, 1419-1425.
    • (2013) RNA Biol. , vol.10 , pp. 1419-1425
    • Yagi, Y.1    Tachikawa, M.2    Noguchi, H.3    Satoh, S.4    Obokata, J.5    Nakamura, T.6
  • 80
    • 84889567382 scopus 로고    scopus 로고
    • Structural basis for the modular recognition of single-stranded RNA by PPR proteins
    • Yin, P., Li, Q., Yan, C., et al. (2013) Structural basis for the modular recognition of single-stranded RNA by PPR proteins. Nature 504, 168-171.
    • (2013) Nature , vol.504 , pp. 168-171
    • Yin, P.1    Li, Q.2    Yan, C.3
  • 81
    • 0029877354 scopus 로고    scopus 로고
    • Extensive RNA editing of U to C in addition to C to U substitution in the rbcL transcripts of hornwort chloroplasts and the origin of RNA editing in green plants
    • Yoshinaga, K., Iinuma, H., Masuzawa, T., and, Uedal, K., (1996) Extensive RNA editing of U to C in addition to C to U substitution in the rbcL transcripts of hornwort chloroplasts and the origin of RNA editing in green plants. Nucleic Acids Res. 24, 1008-1014.
    • (1996) Nucleic Acids Res. , vol.24 , pp. 1008-1014
    • Yoshinaga, K.1    Iinuma, H.2    Masuzawa, T.3    Uedal, K.4
  • 82
    • 84860153569 scopus 로고    scopus 로고
    • Protein-mediated protection as the predominant mechanism for defining processed mRNA termini in land plant chloroplasts
    • Zhelyazkova, P., Hammani, K., Rojas, M., Voelker, R., Vargas-Suarez, M., Borner, T., and, Barkan, A., (2012) Protein-mediated protection as the predominant mechanism for defining processed mRNA termini in land plant chloroplasts. Nucleic Acids Res. 40, 3092-3105.
    • (2012) Nucleic Acids Res. , vol.40 , pp. 3092-3105
    • Zhelyazkova, P.1    Hammani, K.2    Rojas, M.3    Voelker, R.4    Vargas-Suarez, M.5    Borner, T.6    Barkan, A.7
  • 83
    • 84883214673 scopus 로고    scopus 로고
    • MicroRNA-mediated gene regulation: Potential applications for plant genetic engineering
    • Zhou, M., and, Luo, H., (2013) MicroRNA-mediated gene regulation: potential applications for plant genetic engineering. Plant Mol. Biol. 83, 59-75.
    • (2013) Plant Mol. Biol. , vol.83 , pp. 59-75
    • Zhou, M.1    Luo, H.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.