-
1
-
-
84864037467
-
Metabolic reconstruction for metagenomic data and its application to the human microbiome
-
doi: 10.1371/journal.pcbi.1002358
-
Abubucker, S., Segata, N., Goll, J., Schubert, A. M., Izard, J., Cantarel, B. L., et al. (2012). Metabolic reconstruction for metagenomic data and its application to the human microbiome. PLoS Comput. Biol. 8:e1002358. doi: 10.1371/journal.pcbi.1002358.
-
(2012)
PLoS Comput. Biol.
, vol.8
-
-
Abubucker, S.1
Segata, N.2
Goll, J.3
Schubert, A.M.4
Izard, J.5
Cantarel, B.L.6
-
2
-
-
84863662483
-
Reconstruction of genome-scale active metabolic networks for 69 human cell types and 16 cancer types using INIT
-
doi: 10.1371/journal.pcbi.1002518
-
Agren, R., Bordel, S., Mardinoglu, A., Pornputtapong, N., Nookaew, I., and Nielsen, J. (2012). Reconstruction of genome-scale active metabolic networks for 69 human cell types and 16 cancer types using INIT. PLoS Comput. Biol. 8:e1002518. doi: 10.1371/journal.pcbi.1002518.
-
(2012)
PLoS Comput. Biol.
, vol.8
-
-
Agren, R.1
Bordel, S.2
Mardinoglu, A.3
Pornputtapong, N.4
Nookaew, I.5
Nielsen, J.6
-
3
-
-
84875973063
-
The RAVEN toolbox and its use for generating a genome-scale metabolic model for Penicillium chrysogenum
-
doi: 10.1371/journal.pcbi.1002980
-
Agren, R., Liu, L., Shoaie, S., Vongsangnak, W., Nookaew, I., and Nielsen, J. (2013). The RAVEN toolbox and its use for generating a genome-scale metabolic model for Penicillium chrysogenum. PLoS Comput. Biol. 9:e1002980. doi: 10.1371/journal.pcbi.1002980.
-
(2013)
PLoS Comput. Biol.
, vol.9
-
-
Agren, R.1
Liu, L.2
Shoaie, S.3
Vongsangnak, W.4
Nookaew, I.5
Nielsen, J.6
-
4
-
-
84898663879
-
Identification of anticancer drugs for hepatocellular carcinoma through personalized genome-scale metabolic modeling
-
doi: 10.1002/msb.145122
-
Agren, R., Mardinoglu, A., Asplund, A., Kampf, C., Uhlen, M., and Nielsen, J. (2014). Identification of anticancer drugs for hepatocellular carcinoma through personalized genome-scale metabolic modeling. Mol. Syst. Biol. 10:721. doi: 10.1002/msb.145122.
-
(2014)
Mol. Syst. Biol.
, vol.10
, pp. 721
-
-
Agren, R.1
Mardinoglu, A.2
Asplund, A.3
Kampf, C.4
Uhlen, M.5
Nielsen, J.6
-
5
-
-
85027927719
-
Enterotypes of the human gut microbiome
-
doi: 10.1038/Nature09944
-
Arumugam, M., Raes, J., Pelletier, E., Le Paslier, D., Yamada, T., Mende, D. R., et al. (2011). Enterotypes of the human gut microbiome. Nature 473, 174-180. doi: 10.1038/Nature09944.
-
(2011)
Nature
, vol.473
, pp. 174-180
-
-
Arumugam, M.1
Raes, J.2
Pelletier, E.3
Le Paslier, D.4
Yamada, T.5
Mende, D.R.6
-
6
-
-
15544369658
-
Host-bacterial mutualism in the human intestine
-
doi: 10.1126/science.1104816
-
Backhed, F., Ley, R. E., Sonnenburg, J. L., Peterson, D. A., and Gordon, J. I. (2005). Host-bacterial mutualism in the human intestine. Science 307, 1915-1920. doi: 10.1126/science.1104816.
-
(2005)
Science
, vol.307
, pp. 1915-1920
-
-
Backhed, F.1
Ley, R.E.2
Sonnenburg, J.L.3
Peterson, D.A.4
Gordon, J.I.5
-
7
-
-
84862149788
-
Ageing of the human metaorganism: the microbial counterpart
-
doi: 10.1007/s11357-011-9217-5
-
Biagi, E., Candela, M., Fairweather-Tait, S., Franceschi, C., and Brigidi, P. (2012). Ageing of the human metaorganism: the microbial counterpart. Age 34, 247-267. doi: 10.1007/s11357-011-9217-5.
-
(2012)
Age
, vol.34
, pp. 247-267
-
-
Biagi, E.1
Candela, M.2
Fairweather-Tait, S.3
Franceschi, C.4
Brigidi, P.5
-
8
-
-
80054969621
-
A multi-tissue type genome-scale metabolic network for analysis of whole-body systems physiology
-
doi: 10.1186/1752-0509-5-180
-
Bordbar, A., Feist, A. M., Usaite-Black, R., Woodcock, J., Palsson, B. O., and Famili, I. (2011). A multi-tissue type genome-scale metabolic network for analysis of whole-body systems physiology. BMC Syst. Biol. 5:180. doi: 10.1186/1752-0509-5-180.
-
(2011)
BMC Syst. Biol.
, vol.5
, pp. 180
-
-
Bordbar, A.1
Feist, A.M.2
Usaite-Black, R.3
Woodcock, J.4
Palsson, B.O.5
Famili, I.6
-
9
-
-
77958537509
-
Insight into human alveolar macrophage and M. tuberculosis interactions via metabolic reconstructions
-
doi: 10.1038/msb.2010.68
-
Bordbar, A., Lewis, N. E., Schellenberger, J., Palsson, B. O., and Jamshidi, N. (2010). Insight into human alveolar macrophage and M. tuberculosis interactions via metabolic reconstructions. Mol. Syst. Biol. 6:422. doi: 10.1038/msb.2010.68.
-
(2010)
Mol. Syst. Biol.
, vol.6
, pp. 422
-
-
Bordbar, A.1
Lewis, N.E.2
Schellenberger, J.3
Palsson, B.O.4
Jamshidi, N.5
-
10
-
-
67649422301
-
Comparative effects of very low-carbohydrate, high-fat and high-carbohydrate, low-fat weight-loss diets on bowel habit and faecal short-chain fatty acids and bacterial populations
-
doi: 10.1017/S0007114508094658
-
Brinkworth, G. D., Noakes, M., Clifton, P. M., and Bird, A. R. (2009). Comparative effects of very low-carbohydrate, high-fat and high-carbohydrate, low-fat weight-loss diets on bowel habit and faecal short-chain fatty acids and bacterial populations. Br. J. Nutr. 101, 1493-1502. doi: 10.1017/S0007114508094658.
-
(2009)
Br. J. Nutr.
, vol.101
, pp. 1493-1502
-
-
Brinkworth, G.D.1
Noakes, M.2
Clifton, P.M.3
Bird, A.R.4
-
11
-
-
84859199206
-
Genome-scale metabolic reconstructions of Pichia stipitis and Pichia pastoris and in silico evaluation of their potentials
-
doi: 10.1186/1752-0509-6-24
-
Caspeta, L., Shoaie, S., Agren, R., Nookaew, I., and Nielsen, J. (2012). Genome-scale metabolic reconstructions of Pichia stipitis and Pichia pastoris and in silico evaluation of their potentials. BMC Syst. Biol. 6:24. doi: 10.1186/1752-0509-6-24.
-
(2012)
BMC Syst. Biol.
, vol.6
, pp. 24
-
-
Caspeta, L.1
Shoaie, S.2
Agren, R.3
Nookaew, I.4
Nielsen, J.5
-
12
-
-
84864722033
-
Gut microbiota composition correlates with diet and health in the elderly
-
doi: 10.1038/Nature11319
-
Claesson, M. J., Jeffery, I. B., Conde, S., Power, S. E., O'Connor, E. M., Cusack, S., et al. (2012). Gut microbiota composition correlates with diet and health in the elderly. Nature 488, 178-184. doi: 10.1038/Nature11319.
-
(2012)
Nature
, vol.488
, pp. 178-184
-
-
Claesson, M.J.1
Jeffery, I.B.2
Conde, S.3
Power, S.E.4
O'Connor, E.M.5
Cusack, S.6
-
13
-
-
33846434794
-
The effects of short-chain fatty acids on colon epithelial proliferation and survival depend on the cellular phenotype (vol. 132, pg 487, 2006)
-
doi: 10.1007/s00432-006-0172-y
-
Comalada, M., Bailon, E., De Haro, O., Lara-Villoslada, F., Xaus, J., Zarzuelo, A., et al. (2007). The effects of short-chain fatty acids on colon epithelial proliferation and survival depend on the cellular phenotype (vol. 132, pg 487, 2006). J. Cancer Res. Clin. Oncol. 133:211. doi: 10.1007/s00432-006-0172-y.
-
(2007)
J. Cancer Res. Clin. Oncol.
, vol.133
, pp. 211
-
-
Comalada, M.1
Bailon, E.2
De Haro, O.3
Lara-Villoslada, F.4
Xaus, J.5
Zarzuelo, A.6
-
14
-
-
84883057637
-
Dietary intervention impact on gut microbial gene richness
-
doi: 10.1038/Nature12480
-
Cotillard, A., Kennedy, S. P., Kong, L. C., Prifti, E., Pons, N., Le Chatelier, E., et al. (2013). Dietary intervention impact on gut microbial gene richness. Nature 500, 585-588. doi: 10.1038/Nature12480.
-
(2013)
Nature
, vol.500
, pp. 585-588
-
-
Cotillard, A.1
Kennedy, S.P.2
Kong, L.C.3
Prifti, E.4
Pons, N.5
Le Chatelier, E.6
-
15
-
-
84893013094
-
High-fat diet alters gut microbiota physiology in mice
-
doi: 10.1038/ismej.2013.155
-
Daniel, H., Moghaddas Gholami, A., Berry, D., Desmarchelier, C., Hahne, H., Loh, G., et al. (2014). High-fat diet alters gut microbiota physiology in mice. ISME J. 8, 295-308. doi: 10.1038/ismej.2013.155.
-
(2014)
ISME J.
, vol.8
, pp. 295-308
-
-
Daniel, H.1
Moghaddas Gholami, A.2
Berry, D.3
Desmarchelier, C.4
Hahne, H.5
Loh, G.6
-
16
-
-
84892828465
-
Diet rapidly and reproducibly alters the human gut microbiome
-
doi: 10.1038/nature12820
-
David, L. A., Maurice, C. F., Carmody, R. N., Gootenberg, D. B., Button, J. E., Wolfe, B. E., et al. (2014). Diet rapidly and reproducibly alters the human gut microbiome. Nature 505, 559-563. doi: 10.1038/nature12820.
-
(2014)
Nature
, vol.505
, pp. 559-563
-
-
David, L.A.1
Maurice, C.F.2
Carmody, R.N.3
Gootenberg, D.B.4
Button, J.E.5
Wolfe, B.E.6
-
17
-
-
0038676409
-
Inhibition of histone deacetylase activity by butyrate
-
Davie, J. R. (2003). Inhibition of histone deacetylase activity by butyrate. J. Nutr. 133, 2485s-2493s.
-
(2003)
J. Nutr.
, vol.133
-
-
Davie, J.R.1
-
18
-
-
70849133150
-
Bile acid transporters
-
doi: 10.1194/jlr.R900012-JLR200
-
Dawson, P. A., Lan, T., and Rao, A. (2009). Bile acid transporters. J. Lipid Res. 50, 2340-2357. doi: 10.1194/jlr.R900012-JLR200.
-
(2009)
J. Lipid Res.
, vol.50
, pp. 2340-2357
-
-
Dawson, P.A.1
Lan, T.2
Rao, A.3
-
19
-
-
77957075815
-
Impact of diet in shaping gut microbiota revealed by a comparative study in children from Europe and rural Africa
-
doi: 10.1073/pnas.1005963107
-
De Filippo, C., Cavalieri, D., Di Paola, M., Ramazzotti, M., Poullet, J. B., Massart, S., et al. (2010). Impact of diet in shaping gut microbiota revealed by a comparative study in children from Europe and rural Africa. Proc. Natl. Acad. Sci. U.S.A. 107, 14691-14696. doi: 10.1073/pnas.1005963107.
-
(2010)
Proc. Natl. Acad. Sci. U.S.A.
, vol.107
, pp. 14691-14696
-
-
De Filippo, C.1
Cavalieri, D.2
Di Paola, M.3
Ramazzotti, M.4
Poullet, J.B.5
Massart, S.6
-
20
-
-
33846910173
-
Global reconstruction of the human metabolic network based on genomic and bibliomic data
-
doi: 10.1073/pnas.0610772104
-
Duarte, N. C., Becker, S. A., Jamshidi, N., Thiele, I., Mo, M. L., Vo, T. D., et al. (2007). Global reconstruction of the human metabolic network based on genomic and bibliomic data. Proc. Natl. Acad. Sci. U.S.A. 104, 1777-1782. doi: 10.1073/pnas.0610772104.
-
(2007)
Proc. Natl. Acad. Sci. U.S.A.
, vol.104
, pp. 1777-1782
-
-
Duarte, N.C.1
Becker, S.A.2
Jamshidi, N.3
Thiele, I.4
Mo, M.L.5
Vo, T.D.6
-
21
-
-
79955634137
-
The microbial-mammalian metabolic axis: beyond simple metabolism
-
doi: 10.1016/j.cmet.2011.04.005
-
Dumas, M. E. (2011). The microbial-mammalian metabolic axis: beyond simple metabolism. Cell Metab. 13, 489-490. doi: 10.1016/j.cmet.2011.04.005.
-
(2011)
Cell Metab.
, vol.13
, pp. 489-490
-
-
Dumas, M.E.1
-
22
-
-
0033580813
-
Systems properties of the Haemophilus influenzae Rd metabolic genotype
-
doi: 10.1074/jbc.274.25.17410
-
Edwards, J. S., and Palsson, B. O. (1999). Systems properties of the Haemophilus influenzae Rd metabolic genotype. J. Biol. Chem. 274, 17410-17416. doi: 10.1074/jbc.274.25.17410.
-
(1999)
J. Biol. Chem.
, vol.274
, pp. 17410-17416
-
-
Edwards, J.S.1
Palsson, B.O.2
-
23
-
-
84893276590
-
Analysis of the human tissue-specific expression by genome-wide integration of transcriptomics and antibody-based proteomics
-
doi: 10.1074/mcp.M113.035600
-
Fagerberg, L., Hallstrom, B. M., Oksvold, P., Kampf, C., Djureinovic, D., Odeberg, J., et al. (2014). Analysis of the human tissue-specific expression by genome-wide integration of transcriptomics and antibody-based proteomics. Mol. Cell. Proteomics 13, 397-406. doi: 10.1074/mcp.M113.035600.
-
(2014)
Mol. Cell. Proteomics
, vol.13
, pp. 397-406
-
-
Fagerberg, L.1
Hallstrom, B.M.2
Oksvold, P.3
Kampf, C.4
Djureinovic, D.5
Odeberg, J.6
-
24
-
-
79959855078
-
Predicting a human gut microbiota's response to diet in gnotobiotic mice
-
doi: 10.1126/science.1206025
-
Faith, J. J., McNulty, N. P., Rey, F. E., and Gordon, J. I. (2011). Predicting a human gut microbiota's response to diet in gnotobiotic mice. Science 333, 101-104. doi: 10.1126/science.1206025.
-
(2011)
Science
, vol.333
, pp. 101-104
-
-
Faith, J.J.1
McNulty, N.P.2
Rey, F.E.3
Gordon, J.I.4
-
25
-
-
0029653518
-
Whole-genome random sequencing and assembly of Haemophilus Influenzae Rd
-
doi: 10.1126/science.7542800
-
Fleischmann, R. D., Adams, M. D., White, O., Clayton, R. A., Kirkness, E. F., Kerlavage, A. R., et al. (1995). Whole-genome random sequencing and assembly of Haemophilus Influenzae Rd. Science 269, 496-512. doi: 10.1126/science.7542800.
-
(1995)
Science
, vol.269
, pp. 496-512
-
-
Fleischmann, R.D.1
Adams, M.D.2
White, O.3
Clayton, R.A.4
Kirkness, E.F.5
Kerlavage, A.R.6
-
26
-
-
81155133821
-
Dietary guidelines for Americans 2010: implications for cardiovascular disease
-
doi: 10.1007/s11883-011-0205-0
-
Flock, M. R., and Kris-Etherton, P. M. (2011). Dietary guidelines for Americans 2010: implications for cardiovascular disease. Curr. Atheroscler. Rep. 13, 499-507. doi: 10.1007/s11883-011-0205-0.
-
(2011)
Curr. Atheroscler. Rep.
, vol.13
, pp. 499-507
-
-
Flock, M.R.1
Kris-Etherton, P.M.2
-
27
-
-
84455174807
-
Competitive and cooperative metabolic interactions in bacterial communities
-
doi: 10.1038/Ncomms1597
-
Freilich, S., Zarecki, R., Eilam, O., Segal, E. S., Henry, C. S., Kupiec, M., et al. (2011). Competitive and cooperative metabolic interactions in bacterial communities. Nat. Commun. 2:589. doi: 10.1038/Ncomms1597.
-
(2011)
Nat. Commun.
, vol.2
, pp. 589
-
-
Freilich, S.1
Zarecki, R.2
Eilam, O.3
Segal, E.S.4
Henry, C.S.5
Kupiec, M.6
-
28
-
-
80052577723
-
13C tracer recovery in human stools after digestion of a fat-rich meal labelled with [1,1,1-13C3]tripalmitin and [1,1,1-13C3]triolein
-
doi: 10.1002/rcm.5067
-
Gabert, L., Vors, C., Louche-Pelissier, C., Sauvinet, V., Lambert-Porcheron, S., Drai, J., et al. (2011). 13C tracer recovery in human stools after digestion of a fat-rich meal labelled with [1,1,1-13C3]tripalmitin and [1,1,1-13C3]triolein. Rapid Commun. Mass Spectrom. 25, 2697-2703. doi: 10.1002/rcm.5067.
-
(2011)
Rapid Commun. Mass Spectrom.
, vol.25
, pp. 2697-2703
-
-
Gabert, L.1
Vors, C.2
Louche-Pelissier, C.3
Sauvinet, V.4
Lambert-Porcheron, S.5
Drai, J.6
-
29
-
-
23744514277
-
Fibre and effects on probiotics (the prebiotic concept)
-
doi: 10.1016/j.clnu.2004.09.005.
-
Gibson, G. R. (2004). Fibre and effects on probiotics (the prebiotic concept). Clin. Nutr. 25-31. doi: 10.1016/j.clnu.2004.09.005.
-
(2004)
Clin. Nutr.
, pp. 25-31
-
-
Gibson, G.R.1
-
30
-
-
4544371669
-
Determination of the core of a minimal bacterial gene set
-
doi: 10.1128/Mmbr.68.3.518-537.2004
-
Gil, R., Silva, F. J., Pereto, J., and Moya, A. (2004). Determination of the core of a minimal bacterial gene set. Microbiol. Mol. Biol. Rev. 68, 518-537. doi: 10.1128/Mmbr.68.3.518-537.2004.
-
(2004)
Microbiol. Mol. Biol. Rev.
, vol.68
, pp. 518-537
-
-
Gil, R.1
Silva, F.J.2
Pereto, J.3
Moya, A.4
-
31
-
-
83755207153
-
Functional analysis of colonic bacterial metabolism: relevant to health?
-
doi: 10.1152/ajpgi.00048.2011
-
Hamer, H. M., De Preter, V., Windey, K., and Verbeke, K. (2012). Functional analysis of colonic bacterial metabolism: relevant to health? Am. J. Physiol. Gastrointest. Liver Physiol. 302, G1-G9. doi: 10.1152/ajpgi.00048.2011.
-
(2012)
Am. J. Physiol. Gastrointest. Liver Physiol.
, vol.302
-
-
Hamer, H.M.1
De Preter, V.2
Windey, K.3
Verbeke, K.4
-
32
-
-
10344227692
-
Metagenomics: application of genomics to uncultured microorganisms
-
doi: 10.1128/Mmbr.68.4.669-685.2004
-
Handelsman, J. (2004). Metagenomics: application of genomics to uncultured microorganisms. Microbiol. Mol. Biol. Rev. 68, 669-685. doi: 10.1128/Mmbr.68.4.669-685.2004.
-
(2004)
Microbiol. Mol. Biol. Rev.
, vol.68
, pp. 669-685
-
-
Handelsman, J.1
-
33
-
-
77956696072
-
High-throughput generation, optimization and analysis of genome-scale metabolic models
-
doi: 10.1038/nbt.1672
-
Henry, C. S., Dejongh, M., Best, A. A., Frybarger, P. M., Linsay, B., and Stevens, R. L. (2010). High-throughput generation, optimization and analysis of genome-scale metabolic models. Nat. Biotechnol. 28, 977-982. doi: 10.1038/nbt.1672.
-
(2010)
Nat. Biotechnol.
, vol.28
, pp. 977-982
-
-
Henry, C.S.1
Dejongh, M.2
Best, A.A.3
Frybarger, P.M.4
Linsay, B.5
Stevens, R.L.6
-
34
-
-
84871454511
-
Gut microbiota composition and activity in relation to host metabolic phenotype and disease risk
-
doi: 10.1016/j.cmet.2012.10.007
-
Holmes, E., Li, J. V., Marchesi, J. R., and Nicholson, J. K. (2012). Gut microbiota composition and activity in relation to host metabolic phenotype and disease risk. Cell Metab. 16, 559-564. doi: 10.1016/j.cmet.2012.10.007.
-
(2012)
Cell Metab.
, vol.16
, pp. 559-564
-
-
Holmes, E.1
Li, J.V.2
Marchesi, J.R.3
Nicholson, J.K.4
-
35
-
-
84864818817
-
Revolutionizing medicine in the 21st century through systems approaches
-
doi: 10.1002/biot.201100306
-
Hood, L., Balling, R., and Auffray, C. (2012). Revolutionizing medicine in the 21st century through systems approaches. Biotechnol. J. 7, 992-1001. doi: 10.1002/biot.201100306.
-
(2012)
Biotechnol. J.
, vol.7
, pp. 992-1001
-
-
Hood, L.1
Balling, R.2
Auffray, C.3
-
36
-
-
84862276328
-
Structure, function and diversity of the healthy human microbiome
-
doi: 10.1038/Nature11234
-
Huttenhower, C., Gevers, D., Knight, R., Abubucker, S., Badger, J. H., Chinwalla, A. T., et al. (2012). Structure, function and diversity of the healthy human microbiome. Nature 486, 207-214. doi: 10.1038/Nature11234.
-
(2012)
Nature
, vol.486
, pp. 207-214
-
-
Huttenhower, C.1
Gevers, D.2
Knight, R.3
Abubucker, S.4
Badger, J.H.5
Chinwalla, A.T.6
-
37
-
-
84871814687
-
Symptomatic atherosclerosis is associated with an altered gut metagenome
-
doi: 10.1038/Ncomms2266
-
Karlsson, F. H., Fak, F., Nookaew, I., Tremaroli, V., Fagerberg, B., Petranovic, D., et al. (2012). Symptomatic atherosclerosis is associated with an altered gut metagenome. Nat. Commun. 3:1245. doi: 10.1038/Ncomms2266.
-
(2012)
Nat. Commun.
, vol.3
, pp. 1245
-
-
Karlsson, F.H.1
Fak, F.2
Nookaew, I.3
Tremaroli, V.4
Fagerberg, B.5
Petranovic, D.6
-
38
-
-
84891524250
-
Assessing the human gut microbiota in metabolic diseases
-
doi: 10.2337/Db13-0844
-
Karlsson, F., Tremaroli, V., Nielsen, J., and Backhed, F. (2013a). Assessing the human gut microbiota in metabolic diseases. Diabetes Metab. Res. Rev. 62, 3341-3349. doi: 10.2337/Db13-0844.
-
(2013)
Diabetes Metab. Res. Rev.
, vol.62
, pp. 3341-3349
-
-
Karlsson, F.1
Tremaroli, V.2
Nielsen, J.3
Backhed, F.4
-
39
-
-
84878709716
-
Gut metagenome in European women with normal, impaired and diabetic glucose control
-
doi: 10.1038/Nature12198
-
Karlsson, F. H., Tremaroli, V., Nookaew, I., Bergstrom, G., Behre, C. J., Fagerberg, B., et al. (2013b). Gut metagenome in European women with normal, impaired and diabetic glucose control. Nature 498, 99-103. doi: 10.1038/Nature12198.
-
(2013)
Nature
, vol.498
, pp. 99-103
-
-
Karlsson, F.H.1
Tremaroli, V.2
Nookaew, I.3
Bergstrom, G.4
Behre, C.J.5
Fagerberg, B.6
-
40
-
-
79952712983
-
Gut microbiome-host interactions in health and disease
-
doi: 10.1186/Gm228
-
Kinross, J. M., Darzi, A. W., and Nicholson, J. K. (2011). Gut microbiome-host interactions in health and disease. Genome Med. 3:14. doi: 10.1186/Gm228.
-
(2011)
Genome Med.
, vol.3
, pp. 14
-
-
Kinross, J.M.1
Darzi, A.W.2
Nicholson, J.K.3
-
41
-
-
0030904993
-
Effects of inulin and lactose on fecal microflora, microbial activity, and bowel habit in elderly constipated persons
-
Kleessen, B., Sykura, B., Zunft, H. J., and Blaut, M. (1997). Effects of inulin and lactose on fecal microflora, microbial activity, and bowel habit in elderly constipated persons. Am. J. Clin. Nutr. 65, 1397-1402.
-
(1997)
Am. J. Clin. Nutr.
, vol.65
, pp. 1397-1402
-
-
Kleessen, B.1
Sykura, B.2
Zunft, H.J.3
Blaut, M.4
-
42
-
-
84864843180
-
In silico method for modelling metabolism and gene product expression at genome scale
-
doi: 10.1038/Ncomms1928
-
Lerman, J. A., Hyduke, D. R., Latif, H., Portnoy, V. A., Lewis, N. E., Orth, J. D., et al. (2012). In silico method for modelling metabolism and gene product expression at genome scale. Nat. Commun. 3:929. doi: 10.1038/Ncomms1928.
-
(2012)
Nat. Commun.
, vol.3
, pp. 929
-
-
Lerman, J.A.1
Hyduke, D.R.2
Latif, H.3
Portnoy, V.A.4
Lewis, N.E.5
Orth, J.D.6
-
43
-
-
78650002545
-
Large-scale in silico modeling of metabolic interactions between cell types in the human brain
-
doi: 10.1038/nbt.1711
-
Lewis, N. E., Schramm, G., Bordbar, A., Schellenberger, J., Andersen, M. P., Cheng, J. K., et al. (2010). Large-scale in silico modeling of metabolic interactions between cell types in the human brain. Nat. Biotechnol. 28, 1279-1285. doi: 10.1038/nbt.1711.
-
(2010)
Nat. Biotechnol.
, vol.28
, pp. 1279-1285
-
-
Lewis, N.E.1
Schramm, G.2
Bordbar, A.3
Schellenberger, J.4
Andersen, M.P.5
Cheng, J.K.6
-
44
-
-
84881110826
-
Metabolic modeling of species interaction in the human microbiome elucidates community-level assembly rules
-
doi: 10.1073/pnas.1300926110
-
Levy, R., and Borenstein, E. (2013). Metabolic modeling of species interaction in the human microbiome elucidates community-level assembly rules. Proc. Natl. Acad. Sci. U.S.A. 110, 12804-12809. doi: 10.1073/pnas.1300926110.
-
(2013)
Proc. Natl. Acad. Sci. U.S.A.
, vol.110
, pp. 12804-12809
-
-
Levy, R.1
Borenstein, E.2
-
45
-
-
84864000794
-
GEMSiRV: a software platform for GEnome-scale metabolic model simulation, reconstruction and visualization
-
doi: 10.1093/bioinformatics/bts267
-
Liao, Y. C., Tsai, M. H., Chen, F. C., and Hsiung, C. A. (2012). GEMSiRV: a software platform for GEnome-scale metabolic model simulation, reconstruction and visualization. Bioinformatics 28, 1752-1758. doi: 10.1093/bioinformatics/bts267.
-
(2012)
Bioinformatics
, vol.28
, pp. 1752-1758
-
-
Liao, Y.C.1
Tsai, M.H.2
Chen, F.C.3
Hsiung, C.A.4
-
46
-
-
77953128693
-
Use of genome-scale metabolic models for understanding microbial physiology
-
doi: 10.1016/j.febslet.2010.04.052
-
Liu, L. M., Agren, R., Bordel, S., and Nielsen, J. (2010). Use of genome-scale metabolic models for understanding microbial physiology. FEBS Lett. 584, 2556-2564. doi: 10.1016/j.febslet.2010.04.052.
-
(2010)
FEBS Lett.
, vol.584
, pp. 2556-2564
-
-
Liu, L.M.1
Agren, R.2
Bordel, S.3
Nielsen, J.4
-
47
-
-
58749084167
-
Clinical applications of urinary organic acid. Part 2. Dysbiosis markers
-
Lord, R. S., and Bralley, J. A. (2008). Clinical applications of urinary organic acids. Part 2. Dysbiosis markers. Altern. Med. Rev. 13, 292-306.
-
(2008)
Altern. Med. Rev.
, vol.13
, pp. 292-306
-
-
Lord, R.S.1
Bralley, J.A.2
-
48
-
-
34548860112
-
The Edinburgh human metabolic network reconstruction and its functional analysis
-
doi: 10.1038/Msb4100177
-
Ma, H. W., Sorokin, A., Mazein, A., Selkov, A., Selkov, E., Demin, O., et al. (2007). The Edinburgh human metabolic network reconstruction and its functional analysis. Mol. Syst. Biol. 3:135. doi: 10.1038/Msb4100177.
-
(2007)
Mol. Syst. Biol.
, vol.3
, pp. 135
-
-
Ma, H.W.1
Sorokin, A.2
Mazein, A.3
Selkov, A.4
Selkov, E.5
Demin, O.6
-
49
-
-
0022544586
-
Protein degradation by human intestinal bacteria
-
doi: 10.1099/00221287-132-6-1647
-
Macfarlane, G. T., Cummings, J. H., and Allison, C. (1986). Protein degradation by human intestinal bacteria. J. Gen. Microbiol. 132, 1647-1656. doi: 10.1099/00221287-132-6-1647.
-
(1986)
J. Gen. Microbiol.
, vol.132
, pp. 1647-1656
-
-
Macfarlane, G.T.1
Cummings, J.H.2
Allison, C.3
-
50
-
-
65249149643
-
Characterizing a model human gut microbiota composed of members of its two dominant bacterial phyla
-
doi: 10.1073/pnas.0901529106
-
Mahowald, M. A., Rey, F. E., Seedorf, H., Turnbaugh, P. J., Fulton, R. S., Wollam, A., et al. (2009). Characterizing a model human gut microbiota composed of members of its two dominant bacterial phyla. Proc. Natl. Acad. Sci. U.S.A. 106, 5859-5864. doi: 10.1073/pnas.0901529106.
-
(2009)
Proc. Natl. Acad. Sci. U.S.A.
, vol.106
, pp. 5859-5864
-
-
Mahowald, M.A.1
Rey, F.E.2
Seedorf, H.3
Turnbaugh, P.J.4
Fulton, R.S.5
Wollam, A.6
-
51
-
-
84883787394
-
Integration of clinical data with a genome-scale metabolic model of the human adipocyte
-
doi: 10.1038/msb.2013.5
-
Mardinoglu, A., Agren, R., Kampf, C., Asplund, A., Nookaew, I., Jacobson, P., et al. (2013a). Integration of clinical data with a genome-scale metabolic model of the human adipocyte. Mol. Syst. Biol. 9:649. doi: 10.1038/msb.2013.5.
-
(2013)
Mol. Syst. Biol.
, vol.9
, pp. 649
-
-
Mardinoglu, A.1
Agren, R.2
Kampf, C.3
Asplund, A.4
Nookaew, I.5
Jacobson, P.6
-
52
-
-
84883384697
-
Genome-scale modeling of human metabolism - a systems biology approach
-
doi: 10.1002/biot.201200275
-
Mardinoglu, A., Gatto, F., and Nielsen, J. (2013b). Genome-scale modeling of human metabolism - a systems biology approach. Biotechnol. J. 8, 985-996. doi: 10.1002/biot.201200275.
-
(2013)
Biotechnol. J.
, vol.8
, pp. 985-996
-
-
Mardinoglu, A.1
Gatto, F.2
Nielsen, J.3
-
53
-
-
84898011025
-
Genome-scale metabolic modelling of hepatocytes reveals serine deficiency in patients with non-alcoholic fatty liver disease
-
doi: 10.1038/ncomms4083
-
Mardinoglu, A., Agren, R., Kampf, C., Asplund, A., Uhlen, M., and Nielsen, J. (2014). Genome-scale metabolic modelling of hepatocytes reveals serine deficiency in patients with non-alcoholic fatty liver disease. Nat. Commun. 5:3083. doi: 10.1038/ncomms4083.
-
(2014)
Nat. Commun.
, vol.5
, pp. 3083
-
-
Mardinoglu, A.1
Agren, R.2
Kampf, C.3
Asplund, A.4
Uhlen, M.5
Nielsen, J.6
-
54
-
-
84855955467
-
Systems medicine and metabolic modelling
-
doi: 10.1111/j.1365-2796.2011.02493.x
-
Mardinoglu, A., and Nielsen, J. (2012). Systems medicine and metabolic modelling. J. Intern. Med. 271, 142-154. doi: 10.1111/j.1365-2796.2011.02493.x.
-
(2012)
J. Intern. Med.
, vol.271
, pp. 142-154
-
-
Mardinoglu, A.1
Nielsen, J.2
-
55
-
-
80054882496
-
Mucosal macrophages in intestinal homeostasis and inflammation
-
doi: 10.1159/000329099
-
Mowat, A. M., and Bain, C. C. (2011). Mucosal macrophages in intestinal homeostasis and inflammation. J. Innate Immun. 3, 550-564. doi: 10.1159/000329099.
-
(2011)
J. Innate Immun.
, vol.3
, pp. 550-564
-
-
Mowat, A.M.1
Bain, C.C.2
-
56
-
-
84855933234
-
Translational and systems medicine
-
doi: 10.1111/j.1365-2796.2011.02490.x
-
Nielsen, J. (2012). Translational and systems medicine. J. Intern. Med. 271, 108-110. doi: 10.1111/j.1365-2796.2011.02490.x.
-
(2012)
J. Intern. Med.
, vol.271
, pp. 108-110
-
-
Nielsen, J.1
-
57
-
-
73149122136
-
Applications of genome-scale metabolic reconstructions
-
doi: 10.1038/msb.2009.77
-
Oberhardt, M. A., Palsson, B. O., and Papin, J. A. (2009). Applications of genome-scale metabolic reconstructions. Mol. Syst. Biol. 5:320. doi: 10.1038/msb.2009.77.
-
(2009)
Mol. Syst. Biol.
, vol.5
, pp. 320
-
-
Oberhardt, M.A.1
Palsson, B.O.2
Papin, J.A.3
-
58
-
-
84876789665
-
Mapping condition-dependent regulation of metabolism in yeast through genome-scale modeling
-
doi: 10.1186/1752-0509-7-36
-
Osterlund, T., Nookaew, I., Bordel, S., and Nielsen, J. (2013). Mapping condition-dependent regulation of metabolism in yeast through genome-scale modeling. BMC Syst. Biol. 7:36. doi: 10.1186/1752-0509-7-36.
-
(2013)
BMC Syst. Biol.
, vol.7
, pp. 36
-
-
Osterlund, T.1
Nookaew, I.2
Bordel, S.3
Nielsen, J.4
-
59
-
-
9544253891
-
Genome-scale models of microbial cells: evaluating the consequences of constraints
-
doi: 10.1038/Nrmicro1023
-
Price, N. D., Reed, J. L., and Palsson, B. O. (2004). Genome-scale models of microbial cells: evaluating the consequences of constraints. Nat. Rev. Microbiol. 2, 886-897. doi: 10.1038/Nrmicro1023.
-
(2004)
Nat. Rev. Microbiol.
, vol.2
, pp. 886-897
-
-
Price, N.D.1
Reed, J.L.2
Palsson, B.O.3
-
60
-
-
77950251400
-
A human gut microbial gene catalogue established by metagenomic sequencing
-
doi: 10.1038/Nature08821
-
Qin, J. J., Li, R. Q., Raes, J., Arumugam, M., Burgdorf, K. S., Manichanh, C., et al. (2010). A human gut microbial gene catalogue established by metagenomic sequencing. Nature 464, 59-65. doi: 10.1038/Nature08821.
-
(2010)
Nature
, vol.464
, pp. 59-65
-
-
Qin, J.J.1
Li, R.Q.2
Raes, J.3
Arumugam, M.4
Burgdorf, K.S.5
Manichanh, C.6
-
61
-
-
84867074831
-
A metagenome-wide association study of gut microbiota in type 2 diabetes
-
doi: 10.1038/Nature11450
-
Qin, J. J., Li, Y. R., Cai, Z. M., Li, S. H., Zhu, J. F., Zhang, F., et al. (2012). A metagenome-wide association study of gut microbiota in type 2 diabetes. Nature 490, 55-60. doi: 10.1038/Nature11450.
-
(2012)
Nature
, vol.490
, pp. 55-60
-
-
Qin, J.J.1
Li, Y.R.2
Cai, Z.M.3
Li, S.H.4
Zhu, J.F.5
Zhang, F.6
-
62
-
-
84883478660
-
Gut microbiota from twins discordant for obesity modulate metabolism in mice
-
doi: 10.1126/science.1241214
-
Ridaura, V. K., Faith, J. J., Rey, F. E., Cheng, J. Y., Duncan, A. E., Kau, A. L., et al. (2013). Gut microbiota from twins discordant for obesity modulate metabolism in mice. Science 341:1241214. doi: 10.1126/science.1241214.
-
(2013)
Science
, vol.341
, pp. 1241214
-
-
Ridaura, V.K.1
Faith, J.J.2
Rey, F.E.3
Cheng, J.Y.4
Duncan, A.E.5
Kau, A.L.6
-
63
-
-
33244467651
-
Bile salt biotransformations by human intestinal bacteria
-
doi: 10.1194/jlr.R500013-JLR200
-
Ridlon, J. M., Kang, D. J., and Hylemon, P. B. (2006). Bile salt biotransformations by human intestinal bacteria. J. Lipid Res. 47, 241-259. doi: 10.1194/jlr.R500013-JLR200.
-
(2006)
J. Lipid Res.
, vol.47
, pp. 241-259
-
-
Ridlon, J.M.1
Kang, D.J.2
Hylemon, P.B.3
-
64
-
-
0018888157
-
Absorption of short-chain fatty-acids by the colon
-
Ruppin, H., Barmeir, S., Soergel, K. H., Wood, C. M., and Schmitt, M. G. (1980). Absorption of short-chain fatty-acids by the colon. Gastroenterology 78, 1500-1507.
-
(1980)
Gastroenterology
, vol.78
, pp. 1500-1507
-
-
Ruppin, H.1
Barmeir, S.2
Soergel, K.H.3
Wood, C.M.4
Schmitt, M.G.5
-
65
-
-
84878949529
-
Predicting the impact of diet and enzymopathies on human small intestinal epithelial cells
-
doi: 10.1093/hmg/ddt119
-
Sahoo, S., and Thiele, I. (2013). Predicting the impact of diet and enzymopathies on human small intestinal epithelial cells. Hum. Mol. Genet. 22, 2705-2722. doi: 10.1093/hmg/ddt119.
-
(2013)
Hum. Mol. Genet.
, vol.22
, pp. 2705-2722
-
-
Sahoo, S.1
Thiele, I.2
-
66
-
-
33745610880
-
A humanized gnotobiotic mouse model of host-archaeal-bacterial mutualism
-
doi: 10.1073/pnas.0602187103
-
Samuel, B. S., and Gordon, J. I. (2006). A humanized gnotobiotic mouse model of host-archaeal-bacterial mutualism. Proc. Natl. Acad. Sci. U.S.A. 103, 10011-10016. doi: 10.1073/pnas.0602187103.
-
(2006)
Proc. Natl. Acad. Sci. U.S.A.
, vol.103
, pp. 10011-10016
-
-
Samuel, B.S.1
Gordon, J.I.2
-
67
-
-
84873723371
-
The influence of diet on the gut microbiota
-
doi: 10.1016/j.phrs.2012.10.020
-
Scott, K. P., Gratz, S. W., Sheridan, P. O., Flint, H. J., and Duncan, S. H. (2013). The influence of diet on the gut microbiota. Pharmacol. Res. 69, 52-60. doi: 10.1016/j.phrs.2012.10.020.
-
(2013)
Pharmacol. Res.
, vol.69
, pp. 52-60
-
-
Scott, K.P.1
Gratz, S.W.2
Sheridan, P.O.3
Flint, H.J.4
Duncan, S.H.5
-
68
-
-
38849088190
-
Competitive inhibition of histone deacetylase activity by trichostatin A and butyrate
-
doi: 10.1139/007-145
-
Sekhavat, A., Sun, J. M., and Davie, J. R. (2007). Competitive inhibition of histone deacetylase activity by trichostatin A and butyrate. Biochem. Cell Biol. 85, 751-758. doi: 10.1139/007-145.
-
(2007)
Biochem. Cell Biol.
, vol.85
, pp. 751-758
-
-
Sekhavat, A.1
Sun, J.M.2
Davie, J.R.3
-
69
-
-
84857729398
-
Metabolic adaptation to a high-fat diet is associated with a change in the gut microbiota
-
doi: 10.1136/gutjnl-2011-301012
-
Serino, M., Luche, E., Gres, S., Baylac, A., Berge, M., Cenac, C., et al. (2012). Metabolic adaptation to a high-fat diet is associated with a change in the gut microbiota. Gut 61, 543-553. doi: 10.1136/gutjnl-2011-301012.
-
(2012)
Gut
, vol.61
, pp. 543-553
-
-
Serino, M.1
Luche, E.2
Gres, S.3
Baylac, A.4
Berge, M.5
Cenac, C.6
-
70
-
-
84883389182
-
Understanding the interactions between bacteria in the human gut through metabolic modeling
-
doi: 10.1038/Srep02532
-
Shoaie, S., Karlsson, F., Mardinoglu, A., Nookaew, I., Bordel, S., and Nielsen, J. (2013). Understanding the interactions between bacteria in the human gut through metabolic modeling. Sci. Rep. 3:2532. doi: 10.1038/Srep02532.
-
(2013)
Sci. Rep.
, vol.3
, pp. 2532
-
-
Shoaie, S.1
Karlsson, F.2
Mardinoglu, A.3
Nookaew, I.4
Bordel, S.5
Nielsen, J.6
-
71
-
-
33947276100
-
Metabolic modeling of a mutualistic microbial community
-
doi: 10.1038/msb4100131
-
Stolyar, S., Van Dien, S., Hillesland, K. L., Pinel, N., Lie, T. J., Leigh, J. A., et al. (2007). Metabolic modeling of a mutualistic microbial community. Mol. Syst. Biol. 3:92. doi: 10.1038/msb4100131.
-
(2007)
Mol. Syst. Biol.
, vol.3
, pp. 92
-
-
Stolyar, S.1
Van Dien, S.2
Hillesland, K.L.3
Pinel, N.4
Lie, T.J.5
Leigh, J.A.6
-
72
-
-
84856373733
-
Culture-independent methods for studying environmental microorganisms: methods, application, and perspective
-
doi: 10.1007/s00253-011-3800-7
-
Su, C., Lei, L. P., Duan, Y. Q., Zhang, K. Q., and Yang, J. K. (2012). Culture-independent methods for studying environmental microorganisms: methods, application, and perspective. Appl. Microbiol. Biotechnol. 93, 993-1003. doi: 10.1007/s00253-011-3800-7.
-
(2012)
Appl. Microbiol. Biotechnol.
, vol.93
, pp. 993-1003
-
-
Su, C.1
Lei, L.P.2
Duan, Y.Q.3
Zhang, K.Q.4
Yang, J.K.5
-
73
-
-
75149129569
-
A protocol for generating a high-quality genome-scale metabolic reconstruction
-
doi: 10.1038/nprot.2009.203
-
Thiele, I., and Palsson, B. O. (2010). A protocol for generating a high-quality genome-scale metabolic reconstruction. Nat. Protoc. 5, 93-121. doi: 10.1038/nprot.2009.203.
-
(2010)
Nat. Protoc.
, vol.5
, pp. 93-121
-
-
Thiele, I.1
Palsson, B.O.2
-
74
-
-
84877315835
-
A community-driven global reconstruction of human metabolism
-
doi: 10.1038/Nbt.2488
-
Thiele, I., Swainston, N., Fleming, R. M. T., Hoppe, A., Sahoo, S., Aurich, M. K., et al. (2013). A community-driven global reconstruction of human metabolism. Nat. Biotechnol. 31, 419-425. doi: 10.1038/Nbt.2488.
-
(2013)
Nat. Biotechnol.
, vol.31
, pp. 419-425
-
-
Thiele, I.1
Swainston, N.2
Fleming, R.M.T.3
Hoppe, A.4
Sahoo, S.5
Aurich, M.K.6
-
75
-
-
33845874101
-
An obesity-associated gut microbiome with increased capacity for energy harvest
-
doi: 10.1038/Nature05414
-
Turnbaugh, P. J., Ley, R. E., Mahowald, M. A., Magrini, V., Mardis, E. R., and Gordon, J. I. (2006). An obesity-associated gut microbiome with increased capacity for energy harvest. Nature 444, 1027-1031. doi: 10.1038/Nature05414.
-
(2006)
Nature
, vol.444
, pp. 1027-1031
-
-
Turnbaugh, P.J.1
Ley, R.E.2
Mahowald, M.A.3
Magrini, V.4
Mardis, E.R.5
Gordon, J.I.6
-
76
-
-
78650034777
-
Towards a knowledge-based Human Protein Atlas
-
doi: 10.1038/nbt1210-1248
-
Uhlen, M., Oksvold, P., Fagerberg, L., Lundberg, E., Jonasson, K., Forsberg, M., et al. (2010). Towards a knowledge-based Human Protein Atlas. Nat. Biotechnol. 28, 1248-1250. doi: 10.1038/nbt1210-1248.
-
(2010)
Nat. Biotechnol.
, vol.28
, pp. 1248-1250
-
-
Uhlen, M.1
Oksvold, P.2
Fagerberg, L.3
Lundberg, E.4
Jonasson, K.5
Forsberg, M.6
-
77
-
-
84863588844
-
A randomised crossover study investigating the effects of galacto-oligosaccharides on the faecal microbiota in men and women over 50 years of age
-
doi: 10.1017/S0007114511004697
-
Walton, G. E., Van Den Heuvel, E. G. H. M., Kosters, M. H. W., Rastall, R. A., Tuohy, K. M., and Gibson, G. R. (2012). A randomised crossover study investigating the effects of galacto-oligosaccharides on the faecal microbiota in men and women over 50 years of age. Br. J. Nutr. 107, 1466-1475. doi: 10.1017/S0007114511004697.
-
(2012)
Br. J. Nutr.
, vol.107
, pp. 1466-1475
-
-
Walton, G.E.1
Van Den Heuvel, E.G.H.M.2
Kosters, M.H.W.3
Rastall, R.A.4
Tuohy, K.M.5
Gibson, G.R.6
-
78
-
-
79953733693
-
Gut flora metabolism of phosphatidylcholine promotes cardiovascular disease
-
doi: 10.1038/Nature09922
-
Wang, Z. N., Klipfell, E., Bennett, B. J., Koeth, R., Levison, B. S., Dugar, B., et al. (2011). Gut flora metabolism of phosphatidylcholine promotes cardiovascular disease. Nature 472, 57-63. doi: 10.1038/Nature09922.
-
(2011)
Nature
, vol.472
, pp. 57-63
-
-
Wang, Z.N.1
Klipfell, E.2
Bennett, B.J.3
Koeth, R.4
Levison, B.S.5
Dugar, B.6
-
79
-
-
0012780812
-
'Global village or global pillage: economic reconstruction from the bottom up,'
-
eds J. Brecher and T. Costello
-
Waterman, P. (1996). "Global village or global pillage: economic reconstruction from the bottom up," in Development and Change, Vol. 27, eds J. Brecher and T. Costello, 165-180.
-
(1996)
Development and Change
, vol.27
, pp. 165-180
-
-
Waterman, P.1
-
80
-
-
84862141704
-
Human gut microbiome viewed across age and geography
-
doi: 10.1038/Nature11053
-
Yatsunenko, T., Rey, F. E., Manary, M. J., Trehan, I., Dominguez-Bello, M. G., Contreras, M., et al. (2012). Human gut microbiome viewed across age and geography. Nature 486, 222-227. doi: 10.1038/Nature11053.
-
(2012)
Nature
, vol.486
, pp. 222-227
-
-
Yatsunenko, T.1
Rey, F.E.2
Manary, M.J.3
Trehan, I.4
Dominguez-Bello, M.G.5
Contreras, M.6
-
81
-
-
84861224400
-
Catchment-scale reconstruction of glacier mass balance using observations and global climate data: case study of the Hailuogou catchment, south-eastern Tibetan Plateau
-
doi: 10.1016/j.jhydrol.2012.04.014
-
Zhang, Y., Hirabayashi, Y., and Liu, S. Y. (2012). Catchment-scale reconstruction of glacier mass balance using observations and global climate data: case study of the Hailuogou catchment, south-eastern Tibetan Plateau. J. Hydrol. 444, 146-160. doi: 10.1016/j.jhydrol.2012.04.014.
-
(2012)
J. Hydrol.
, vol.444
, pp. 146-160
-
-
Zhang, Y.1
Hirabayashi, Y.2
Liu, S.Y.3
-
82
-
-
84861180223
-
OptCom: a multi-level optimization framework for the metabolic modeling and analysis of microbial communities
-
doi: 10.1371/journal.pcbi.1002363
-
Zomorrodi, A. R., and Maranas, C. D. (2012). OptCom: a multi-level optimization framework for the metabolic modeling and analysis of microbial communities. PLoS Comput. Biol. 8:e1002363. doi: 10.1371/journal.pcbi.1002363.
-
(2012)
PLoS Comput. Biol.
, vol.8
-
-
Zomorrodi, A.R.1
Maranas, C.D.2
|