-
1
-
-
70449449392
-
Genome scale reconstruction of a Salmonella metabolic model
-
AbuOun M, Suthers PF, Jones GI, Carter BR, Saunders MP, Maranas CD, Woodward MJ, Anjum MF (2009) Genome scale reconstruction of a Salmonella metabolic model. J Biol Chem 284: 29480-29488
-
(2009)
J Biol Chem
, vol.284
, pp. 29480-29488
-
-
Abuoun, M.1
Suthers, P.F.2
Jones, G.I.3
Carter, B.R.4
Saunders, M.P.5
Maranas, C.D.6
Woodward, M.J.7
Anjum, M.F.8
-
2
-
-
18844411592
-
Increased uptake of folate conjugates by activated macrophages in experimental hyperlipemia
-
Antohe F, Radulescu L, Puchianu E, Kennedy MD, Low PS, Simionescu M (2005) Increased uptake of folate conjugates by activated macrophages in experimental hyperlipemia. Cell Tissue Res 320: 277-285
-
(2005)
Cell Tissue Res
, vol.320
, pp. 277-285
-
-
Antohe, F.1
Radulescu, L.2
Puchianu, E.3
Kennedy, M.D.4
Low, P.S.5
Simionescu, M.6
-
3
-
-
3042829009
-
The influence of reduced oxygen availability on pathogenicity and gene expression in Mycobacterium tuberculosis
-
Bacon J, James BW, Wernisch L, Williams A, Morley KA, Hatch GJ, Mangan JA, Hinds J, Stoker NG, Butcher PD, Marsh PD (2004) The influence of reduced oxygen availability on pathogenicity and gene expression in Mycobacterium tuberculosis. Tuberculosis (Edinb) 84: 205-217
-
(2004)
Tuberculosis (Edinb)
, vol.84
, pp. 205-217
-
-
Bacon, J.1
James, B.W.2
Wernisch, L.3
Williams, A.4
Morley, K.A.5
Hatch, G.J.6
Mangan, J.A.7
Hinds, J.8
Stoker, N.G.9
Butcher, P.D.10
Marsh, P.D.11
-
4
-
-
65749086909
-
Mycolic acid cyclopropanation is essential for viability, drug resistance, and cell wall integrity of Mycobacterium tuberculosis
-
Barkan D, Liu Z, Sacchettini JC, Glickman MS (2009) Mycolic acid cyclopropanation is essential for viability, drug resistance, and cell wall integrity of Mycobacterium tuberculosis. Chem Biol 16: 499-509
-
(2009)
Chem Biol
, vol.16
, pp. 499-509
-
-
Barkan, D.1
Liu, Z.2
Sacchettini, J.C.3
Glickman, M.S.4
-
5
-
-
34347258175
-
Quantitative prediction of cellular metabolism with constraint-based models: The COBRA Toolbox
-
Becker SA, Feist AM, Mo ML, Hannum G, Palsson BO, Herrgard MJ (2007) Quantitative prediction of cellular metabolism with constraint-based models: the COBRA Toolbox. Nat Protocols 2: 727-738
-
(2007)
Nat Protocols
, vol.2
, pp. 727-738
-
-
Becker, S.A.1
Feist, A.M.2
Mo, M.L.3
Hannum, G.4
Palsson, B.O.5
Herrgard, M.J.6
-
6
-
-
44949225040
-
Context-specific metabolic networks are consistent with experiments
-
Becker SA, Palsson BO (2008) Context-specific metabolic networks are consistent with experiments. PLoS Comput Biol 4: e1000082
-
(2008)
PLoS Comput Biol
, vol.4
-
-
Becker, S.A.1
Palsson, B.O.2
-
7
-
-
55049112492
-
A genecentric human protein atlas for expression profiles based on antibodies
-
Berglund L, Bjorling E, Oksvold P, Fagerberg L, Asplund A, Szigyarto CA, Persson A, Ottosson J, Wernerus H, Nilsson P, Lundberg E, Sivertsson A, Navani S, Wester K, Kampf C, Hober S, Pontén F, Uhlén M (2008) A genecentric human protein atlas for expression profiles based on antibodies. Mol Cell Proteomics 7: 2019-2027
-
(2008)
Mol Cell Proteomics
, vol.7
, pp. 2019-2027
-
-
Berglund, L.1
Bjorling, E.2
Oksvold, P.3
Fagerberg, L.4
Asplund, A.5
Szigyarto, C.A.6
Persson, A.7
Ottosson, J.8
Wernerus, H.9
Nilsson, P.10
Lundberg, E.11
Sivertsson, A.12
Navani, S.13
Wester, K.14
Kampf, C.15
Hober, S.16
Pontén, F.17
Uhlén, M.18
-
8
-
-
34548861262
-
GSMNTB: A web-based genome-scale network model of Mycobacterium tuberculosis metabolism
-
Beste DJ, Hooper T, Stewart G, Bonde B, Avignone-Rossa C, Bushell ME, Wheeler P, Klamt S, Kierzek AM, McFadden J (2007) GSMNTB: a web-based genome-scale network model of Mycobacterium tuberculosis metabolism. Genome Biol 8: R89
-
(2007)
Genome Biol
, vol.8
-
-
Beste, D.J.1
Hooper, T.2
Stewart, G.3
Bonde, B.4
Avignone-Rossa, C.5
Bushell, M.E.6
Wheeler, P.7
Klamt, S.8
Kierzek, A.M.9
McFadden, J.10
-
9
-
-
11144250804
-
Tuberculosis-metabolism and respiration in the absence of growth
-
Boshoff HI, Barry III CE (2005) Tuberculosis-metabolism and respiration in the absence of growth. Nat Rev Microbiol 3: 70-80
-
(2005)
Nat Rev Microbiol
, vol.3
, pp. 70-80
-
-
Boshoff, H.I.1
Barry III, C.E.2
-
10
-
-
50349099789
-
Biosynthesis and recycling of nicotinamide cofactors in mycobacterium tuberculosis. An essential role for NAD in nonreplicating bacilli
-
Boshoff HI, Xu X, Tahlan K, Dowd CS, Pethe K, Camacho LR, Park TH, Yun CS, Schnappinger D, Ehrt S, Williams KJ, Barry III CE (2008) Biosynthesis and recycling of nicotinamide cofactors in mycobacterium tuberculosis. An essential role for NAD in nonreplicating bacilli. J Biol Chem 283: 19329-19341
-
(2008)
J Biol Chem
, vol.283
, pp. 19329-19341
-
-
Boshoff, H.I.1
Xu, X.2
Tahlan, K.3
Dowd, C.S.4
Pethe, K.5
Camacho, L.R.6
Park, T.H.7
Yun, C.S.8
Schnappinger, D.9
Ehrt, S.10
Williams, K.J.11
Barry III, C.E.12
-
11
-
-
70350455934
-
Mycobacterium tuberculosis is able to accumulate and utilize cholesterol
-
Brzostek A, Pawelczyk J, Rumijowska-Galewicz A, Dziadek B, Dziadek J (2009) Mycobacterium tuberculosis is able to accumulate and utilize cholesterol. J Bacteriol 191: 6584-6591
-
(2009)
J Bacteriol
, vol.191
, pp. 6584-6591
-
-
Brzostek, A.1
Pawelczyk, J.2
Rumijowska-Galewicz, A.3
Dziadek, B.4
Dziadek, J.5
-
12
-
-
0242700785
-
-
2nd edn. Oxford, New York: Oxford University Press
-
Burke B, Lewis CE (2002) The macrophage, 2nd edn. Oxford, New York: Oxford University Press
-
(2002)
The Macrophage
-
-
Burke, B.1
Lewis, C.E.2
-
13
-
-
58149185126
-
BRENDA, AMENDA and FRENDA the enzyme information system: New content and tools in 2009
-
Chang A, Scheer M, Grote A, Schomburg I, Schomburg D (2009) BRENDA, AMENDA and FRENDA the enzyme information system: new content and tools in 2009. Nucleic Acids Res 37: D588-D592
-
(2009)
Nucleic Acids Res
, vol.37
-
-
Chang, A.1
Scheer, M.2
Grote, A.3
Schomburg, I.4
Schomburg, D.5
-
14
-
-
0037064003
-
Role of the pks15/1 gene in the biosynthesis of phenolglycolipids in the Mycobacterium tuberculosis complex
-
Constant P, Perez E, Malaga W, Laneelle MA, Saurel O, Daffe M, Guilhot C (2002) Role of the pks15/1 gene in the biosynthesis of phenolglycolipids in the Mycobacterium tuberculosis complex. J Biol Chem 277: 38148-38158
-
(2002)
J Biol Chem
, vol.277
, pp. 38148-38158
-
-
Constant, P.1
Perez, E.2
Malaga, W.3
Laneelle, M.A.4
Saurel, O.5
Daffe, M.6
Guilhot, C.7
-
15
-
-
0023874138
-
Metabolism of pyruvate by isolated rat mesenteric lymphocytes, lymphocyte mitochondria and isolated mouse macrophages
-
Curi R, Newsholme P, Newsholme EA (1988) Metabolism of pyruvate by isolated rat mesenteric lymphocytes, lymphocyte mitochondria and isolated mouse macrophages. Biochem J 250: 383-388
-
(1988)
Biochem J
, vol.250
, pp. 383-388
-
-
Curi, R.1
Newsholme, P.2
Newsholme, E.A.3
-
16
-
-
33846910173
-
Global reconstruction of the human metabolic network based on genomic and bibliomic data
-
Duarte NC, Becker SA, Jamshidi N, Thiele I, Mo ML, Vo TD, Srivas R, Palsson BO (2007) Global reconstruction of the human metabolic network based on genomic and bibliomic data. Proc Natl Acad Sci USA 104: 1777-1782
-
(2007)
Proc Natl Acad Sci USA
, vol.104
, pp. 1777-1782
-
-
Duarte, N.C.1
Becker, S.A.2
Jamshidi, N.3
Thiele, I.4
Mo, M.L.5
Vo, T.D.6
Srivas, R.7
Palsson, B.O.8
-
17
-
-
3843128481
-
Reconstruction and validation of Saccharomyces cerevisiae iND750, a fully compartmentalized genome-scale metabolic model
-
Duarte NC, Herrgard MJ, Palsson B (2004) Reconstruction and validation of Saccharomyces cerevisiae iND750, a fully compartmentalized genome-scale metabolic model. Genome Res 14: 1298-1309
-
(2004)
Genome Res
, vol.14
, pp. 1298-1309
-
-
Duarte, N.C.1
Herrgard, M.J.2
Palsson, B.3
-
18
-
-
37449007556
-
Characterization of the Mycobacterium tuberculosis 4-diphosphocytidyl-2- C-methyl-Derythritol synthase: Potential for drug development
-
Eoh H, Brown AC, Buetow L, Hunter WN, Parish T, Kaur D, Brennan PJ, Crick DC (2007) Characterization of the Mycobacterium tuberculosis 4-diphosphocytidyl-2-C-methyl-Derythritol synthase: potential for drug development. J Bacteriol 189: 8922-8927
-
(2007)
J Bacteriol
, vol.189
, pp. 8922-8927
-
-
Eoh, H.1
Brown, A.C.2
Buetow, L.3
Hunter, W.N.4
Parish, T.5
Kaur, D.6
Brennan, P.J.7
Crick, D.C.8
-
19
-
-
0344824417
-
Saccharomyces cerevisiae phenotypes can be predicted by using constraint-based analysis of a genome-scale reconstructed metabolic network
-
Famili I, Forster J, Nielsen J, Palsson BO (2003) Saccharomyces cerevisiae phenotypes can be predicted by using constraint-based analysis of a genome-scale reconstructed metabolic network. Proc Natl Acad Sci USA 100: 13134-13139
-
(2003)
Proc Natl Acad Sci USA
, vol.100
, pp. 13134-13139
-
-
Famili, I.1
Forster, J.2
Nielsen, J.3
Palsson, B.O.4
-
20
-
-
34347332311
-
A genome-scale metabolic reconstruction for Escherichia coli K-12 MG1655 that accounts for 1260 ORFs and thermodynamic information
-
Feist AM, Henry CS, Reed JL, Krummenacker M, Joyce AR, Karp PD, Broadbelt LJ, Hatzimanikatis V, Palsson BO (2007) A genome-scale metabolic reconstruction for Escherichia coli K-12 MG1655 that accounts for 1260 ORFs and thermodynamic information. Mol Syst Biol 3: 121
-
(2007)
Mol Syst Biol
, vol.3
, pp. 121
-
-
Feist, A.M.1
Henry, C.S.2
Reed, J.L.3
Krummenacker, M.4
Joyce, A.R.5
Karp, P.D.6
Broadbelt, L.J.7
Hatzimanikatis, V.8
Palsson, B.O.9
-
21
-
-
36249032544
-
The macrophage: Past, present and future
-
Gordon S (2007) The macrophage: past, present and future. Eur J Immunol 37(Suppl 1): S9-17
-
(2007)
Eur J Immunol
, vol.37
, Issue.SUPPL. 1
-
-
Gordon, S.1
-
22
-
-
0027374973
-
Inducible nitric oxide synthase from a rat alveolar macrophage cell line is inhibited by nitric oxide
-
Griscavage JM, Rogers NE, Sherman MP, Ignarro LJ (1993) Inducible nitric oxide synthase from a rat alveolar macrophage cell line is inhibited by nitric oxide. J Immunol 151: 6329-6337
-
(1993)
J Immunol
, vol.151
, pp. 6329-6337
-
-
Griscavage, J.M.1
Rogers, N.E.2
Sherman, M.P.3
Ignarro, L.J.4
-
23
-
-
0014813635
-
Nucleic acid content in cultures of macrophages with antigen
-
Grutman MI, Orgel M (1970) Nucleic acid content in cultures of macrophages with antigen. Biull Eksp Biol Med 70: 70-71
-
(1970)
Biull Eksp Biol Med
, vol.70
, pp. 70-71
-
-
Grutman, M.I.1
Orgel, M.2
-
24
-
-
3042790827
-
Stationary phase gene expression of Mycobacterium tuberculosis following a progressive nutrient depletion: A model for persistent organisms?
-
Hampshire T, Soneji S, Bacon J, James BW, Hinds J, Laing K, Stabler RA, Marsh PD, Butcher PD (2004) Stationary phase gene expression of Mycobacterium tuberculosis following a progressive nutrient depletion: a model for persistent organisms? Tuberculosis (Edinb) 84: 228-238
-
(2004)
Tuberculosis (Edinb)
, vol.84
, pp. 228-238
-
-
Hampshire, T.1
Soneji, S.2
Bacon, J.3
James, B.W.4
Hinds, J.5
Laing, K.6
Stabler, R.A.7
Marsh, P.D.8
Butcher, P.D.9
-
25
-
-
73649138593
-
Mycobacteria exploit host hyaluronan for efficient extracellular replication
-
Hirayama Y, YoshimuraM, Ozeki Y, Sugawara I, Udagawa T, Mizuno S, Itano N, Kimata K, Tamaru A, Ogura H, Kobayashi K, Matsumoto S (2009) Mycobacteria exploit host hyaluronan for efficient extracellular replication. PLoS Pathog 5: e1000643
-
(2009)
PLoS Pathog
, vol.5
-
-
Hirayama, Y.1
Yoshimuram Ozeki, Y.2
Sugawara, I.3
Udagawa, T.4
Mizuno, S.5
Itano, N.6
Kimata, K.7
Tamaru, A.8
Ogura, H.9
Kobayashi, K.10
Matsumoto, S.11
-
26
-
-
0035584286
-
Mycobacterial persistence: Adaptation to a changing environment
-
Honer zu Bentrup K, Russell DG (2001) Mycobacterial persistence: adaptation to a changing environment. Trends Microbiol 9: 597-605
-
(2001)
Trends Microbiol
, vol.9
, pp. 597-605
-
-
Honerzu Bentrup, K.1
Russell, D.G.2
-
27
-
-
72949108894
-
3-Ketosteroid 9alpha-hydroxylase is an essential factor in the pathogenesis of Mycobacterium tuberculosis
-
Hu Y, van der Geize R, Besra GS, Gurcha SS, Liu A, Rohde M, Singh M, Coates A (2010) 3-Ketosteroid 9alpha-hydroxylase is an essential factor in the pathogenesis of Mycobacterium tuberculosis. Mol Microbiol 75: 107-121
-
(2010)
Mol Microbiol
, vol.75
, pp. 107-121
-
-
Hu, Y.1
Van Der Geize, R.2
Besra, G.S.3
Gurcha, S.S.4
Liu, A.5
Rohde, M.6
Singh, M.7
Coates, A.8
-
28
-
-
50149105712
-
Impact of the hyaluronan-rich tumor microenvironment on cancer initiation and progression
-
Itano N, Zhuo L, Kimata K (2008) Impact of the hyaluronan-rich tumor microenvironment on cancer initiation and progression. Cancer Sci 99: 1720-1725
-
(2008)
Cancer Sci
, vol.99
, pp. 1720-1725
-
-
Itano, N.1
Zhuo, L.2
Kimata, K.3
-
29
-
-
0021853049
-
Enumeration and structural assessment of peritoneal macrophages during progressive protein deficiency in rats
-
Iyengar UR, Vakil UK (1985) Enumeration and structural assessment of peritoneal macrophages during progressive protein deficiency in rats. J Biosci 7: 15-26
-
(1985)
J Biosci
, vol.7
, pp. 15-26
-
-
Iyengar, U.R.1
Vakil, U.K.2
-
30
-
-
34447317247
-
Investigating the metabolic capabilities of Mycobacterium tuberculosis H37Rv using the in silico strain iNJ661 and proposing alternative drug targets
-
Jamshidi N, Palsson BO (2007) Investigating the metabolic capabilities of Mycobacterium tuberculosis H37Rv using the in silico strain iNJ661 and proposing alternative drug targets. BMC Syst Biol 1: 26
-
(2007)
BMC Syst Biol
, vol.1
, pp. 26
-
-
Jamshidi, N.1
Palsson, B.O.2
-
31
-
-
66949125819
-
Using in silico models to simulate dual perturbation experiments: Procedure development and interpretation of outcomes
-
Jamshidi N, Palsson BO (2009) Using in silico models to simulate dual perturbation experiments: procedure development and interpretation of outcomes. BMC Syst Biol 3: 44
-
(2009)
BMC Syst Biol
, vol.3
, pp. 44
-
-
Jamshidi, N.1
Palsson, B.O.2
-
32
-
-
76249110141
-
Eating at the table of another: Metabolomics of host-parasite interactions
-
Kafsack BF, Llinas M (2010) Eating at the table of another: metabolomics of host-parasite interactions. Cell Host Microbe 7: 90-99
-
(2010)
Cell Host Microbe
, vol.7
, pp. 90-99
-
-
Kafsack, B.F.1
Llinas, M.2
-
33
-
-
0031679770
-
Direction choice for accelerated convergence in hit-and-run sampling
-
Kaufman DE, Smith RL (1998) Direction choice for accelerated convergence in hit-and-run sampling. Oper Res 46: 84-96
-
(1998)
Oper Res
, vol.46
, pp. 84-96
-
-
Kaufman, D.E.1
Smith, R.L.2
-
34
-
-
57349174406
-
Overexpression of apoptotic cell removal receptor MERTK in alveolar macrophages of cigarette smokers
-
Kazeros A, Harvey BG, Carolan BJ, Vanni H, Krause A, Crystal RG (2008) Overexpression of apoptotic cell removal receptor MERTK in alveolar macrophages of cigarette smokers. Am J Respir Cell Mol Biol 39: 747-757
-
(2008)
Am J Respir Cell Mol Biol
, vol.39
, pp. 747-757
-
-
Kazeros, A.1
Harvey, B.G.2
Carolan, B.J.3
Vanni, H.4
Krause, A.5
Crystal, R.G.6
-
35
-
-
58149193222
-
Human protein reference database-2009 update
-
Keshava Prasad TS, Goel R, Kandasamy K, Keerthikumar S, Kumar S, Mathivanan S, Telikicherla D, Raju R, Shafreen B, Venugopal A, Balakrishnan L, Marimuthu A, Banerjee S, Somanathan DS, Sebastian A, Rani S, Ray S, Harrys Kishore CJ, Kanth S, Ahmed M et al (2009) Human protein reference database-2009 update. Nucleic Acids Res 37: D767-D772
-
(2009)
Nucleic Acids Res
, vol.37
-
-
Keshava Prasad, T.S.1
Goel, R.2
Kandasamy, K.3
Keerthikumar, S.4
Kumar, S.5
Mathivanan, S.6
Telikicherla, D.7
Raju, R.8
Shafreen, B.9
Venugopal, A.10
Balakrishnan, L.11
Marimuthu, A.12
Banerjee, S.13
Somanathan, D.S.14
Sebastian, A.15
Rani, S.16
Ray, S.17
Harrys Kishore, C.J.18
Kanth, S.19
Ahmed, M.20
more..
-
36
-
-
61449134182
-
Identification of potential pathway mediation targets in Toll-like receptor signaling
-
Li F, Thiele I, Jamshidi N, Palsson BO (2009) Identification of potential pathway mediation targets in Toll-like receptor signaling. PLoS Comput Biol 5: e1000292
-
(2009)
PLoS Comput Biol
, vol.5
-
-
Li, F.1
Thiele, I.2
Jamshidi, N.3
Palsson, B.O.4
-
37
-
-
34447342288
-
A single dose of vitamin D enhances immunity to mycobacteria
-
Martineau AR, Wilkinson RJ, Wilkinson KA, Newton SM, Kampmann B, Hall BM, Packe GE, Davidson RN, Eldridge SM, Maunsell ZJ, Rainbow SJ, Berry JL, Griffiths CJ (2007) A single dose of vitamin D enhances immunity to mycobacteria. Am J Respir Crit Care Med 176: 208-213
-
(2007)
Am J Respir Crit Care Med
, vol.176
, pp. 208-213
-
-
Martineau, A.R.1
Wilkinson, R.J.2
Wilkinson, K.A.3
Newton, S.M.4
Kampmann, B.5
Hall, B.M.6
Packe, G.E.7
Davidson, R.N.8
Eldridge, S.M.9
Maunsell, Z.J.10
Rainbow, S.J.11
Berry, J.L.12
Griffiths, C.J.13
-
38
-
-
0024320061
-
MH-S, a murine alveolar macrophage cell line: Morphological, cytochemical, and functional characteristics
-
Mbawuike IN, Herscowitz HB (1989) MH-S, a murine alveolar macrophage cell line: morphological, cytochemical, and functional characteristics. J Leukoc Biol 46: 119-127
-
(1989)
J Leukoc Biol
, vol.46
, pp. 119-127
-
-
Mbawuike, I.N.1
Herscowitz, H.B.2
-
39
-
-
0342794213
-
Persistence of Mycobacterium tuberculosis in macrophages and mice requires the glyoxylate shunt enzyme isocitrate lyase
-
McKinney JD, Honer zu Bentrup K, Munoz-Elias EJ, Miczak A, Chen B, Chan WT, Swenson D, Sacchettini JC, Jacobs Jr WR, Russell DG (2000) Persistence of Mycobacterium tuberculosis in macrophages and mice requires the glyoxylate shunt enzyme isocitrate lyase. Nature 406: 735-738
-
(2000)
Nature
, vol.406
, pp. 735-738
-
-
McKinney, J.D.1
Honerzu Bentrup, K.2
Munoz-Elias, E.J.3
Miczak, A.4
Chen, B.5
Chan, W.T.6
Swenson, D.7
Sacchettini, J.C.8
Jacobs Jr., W.R.9
Russell, D.G.10
-
40
-
-
0023029455
-
Metabolism of glucose, glutamine, long-chain fatty acids and ketone bodies by murine macrophages
-
Newsholme P, Curi R, Gordon S, Newsholme EA (1986) Metabolism of glucose, glutamine, long-chain fatty acids and ketone bodies by murine macrophages. Biochem J 239: 121-125
-
(1986)
Biochem J
, vol.239
, pp. 121-125
-
-
Newsholme, P.1
Curi, R.2
Gordon, S.3
Newsholme, E.A.4
-
41
-
-
0032988358
-
Glutamine metabolism by lymphocytes, macrophages, and neutrophils: Its importance in health and disease
-
Newsholme P, Curi R, Pithon Curi TC, Murphy CJ, Garcia C, Pires de Melo M (1999) Glutamine metabolism by lymphocytes, macrophages, and neutrophils: its importance in health and disease. J Nutr Biochem 10: 316-324
-
(1999)
J Nutr Biochem
, vol.10
, pp. 316-324
-
-
Newsholme, P.1
Curi, R.2
Pithon Curi, T.C.3
Murphy, C.J.4
Garcia, C.5
Pires De Melo, M.6
-
43
-
-
5044230561
-
Two-dimensional annotation of genomes
-
Palsson BO (2004) Two-dimensional annotation of genomes. Nat Biotechnol 22: 1218-1219
-
(2004)
Nat Biotechnol
, vol.22
, pp. 1218-1219
-
-
Palsson, B.O.1
-
44
-
-
44649128524
-
Mycobacterium tuberculosis and the macrophage: Maintaining a balance
-
Pieters J (2008) Mycobacterium tuberculosis and the macrophage: maintaining a balance. Cell Host Microbe 3: 399-407
-
(2008)
Cell Host Microbe
, vol.3
, pp. 399-407
-
-
Pieters, J.1
-
45
-
-
34548583308
-
Sulfite reduction in mycobacteria
-
Pinto R, Harrison JS, Hsu T, Jacobs Jr WR, Leyh TS (2007) Sulfite reduction in mycobacteria. J Bacteriol 189: 6714-6722
-
(2007)
J Bacteriol
, vol.189
, pp. 6714-6722
-
-
Pinto, R.1
Harrison, J.S.2
Hsu, T.3
Jacobs Jr., W.R.4
Leyh, T.S.5
-
46
-
-
4644220226
-
Genome-scale in silico models of E. coli have multiple equivalent phenotypic states: Assessment of correlated reaction subsets that comprise network states
-
Reed JL, Palsson BO (2004) Genome-scale in silico models of E. coli have multiple equivalent phenotypic states: assessment of correlated reaction subsets that comprise network states. Genome Res 14: 1797-1805
-
(2004)
Genome Res
, vol.14
, pp. 1797-1805
-
-
Reed, J.L.1
Palsson, B.O.2
-
48
-
-
0031400122
-
Mycobacterium tuberculosis (MTB)-stimulated production of nitric oxide by human alveolar macrophages and relationship of nitric oxide production to growth inhibition of MTB
-
Rich EA, Torres M, Sada E, Finegan CK, Hamilton BD, Toossi Z (1997) Mycobacterium tuberculosis (MTB)-stimulated production of nitric oxide by human alveolar macrophages and relationship of nitric oxide production to growth inhibition of MTB. Tuber Lung Dis 5-6: 247-255
-
(1997)
Tuber Lung Dis
, vol.5-6
, pp. 247-255
-
-
Rich, E.A.1
Torres, M.2
Sada, E.3
Finegan, C.K.4
Hamilton, B.D.5
Toossi, Z.6
-
50
-
-
0017499009
-
Lipid composition of human alveolar macrophages
-
Sahu S, Lynn WS (1977) Lipid composition of human alveolar macrophages. Inflammation 2: 83-91
-
(1977)
Inflammation
, vol.2
, pp. 83-91
-
-
Sahu, S.1
Lynn, W.S.2
-
51
-
-
0242268400
-
Genetic requirements for mycobacterial survival during infection
-
Sassetti CM, Rubin EJ (2003) Genetic requirements for mycobacterial survival during infection. Proc Natl Acad Sci USA 100: 12989-12994
-
(2003)
Proc Natl Acad Sci USA
, vol.100
, pp. 12989-12994
-
-
Sassetti, C.M.1
Rubin, E.J.2
-
52
-
-
0023665049
-
Neutral amino acid transport in mouse peritoneal macrophages
-
Sato H, Watanabe H, Ishii T, Bannai S (1987) Neutral amino acid transport in mouse peritoneal macrophages. J Biol Chem 262: 13015-13019
-
(1987)
J Biol Chem
, vol.262
, pp. 13015-13019
-
-
Sato, H.1
Watanabe, H.2
Ishii, T.3
Bannai, S.4
-
53
-
-
34250417308
-
Drug-induced phospholipidosis I. Lipid composition and chlorphentermine content of rat lung tissue and alveolar macrophages after chronic treatment
-
Schmien R, Seiler KU, Wassermann O (1974) Drug-induced phospholipidosis. I. Lipid composition and chlorphentermine content of rat lung tissue and alveolar macrophages after chronic treatment. Naunyn Schmiedebergs Arch Pharmacol 283: 331-334
-
(1974)
Naunyn Schmiedebergs Arch Pharmacol
, vol.283
, pp. 331-334
-
-
Schmien, R.1
Seiler, K.U.2
Wassermann, O.3
-
54
-
-
33847783057
-
Macrophage biology and immunology: Man is not a mouse
-
Schneemann M, Schoeden G (2007) Macrophage biology and immunology: man is not a mouse. J Leukoc Biol 81: 579
-
(2007)
J Leukoc Biol
, vol.81
, pp. 579
-
-
Schneemann, M.1
Schoeden, G.2
-
55
-
-
0043142536
-
Transcriptional adaptation of Mycobacterium tuberculosis within macrophages: Insights into the phagosomal environment
-
Schnappinger D, Ehrt S, Voskuil MI, Liu Y, Mangan JA, Monahan IM, Dolganov G, Efron B, Butcher PD, Nathan C, Schoolnik GK (2003) Transcriptional adaptation of Mycobacterium tuberculosis within macrophages: insights into the phagosomal environment. J Exp Med 198: 693-704
-
(2003)
J Exp Med
, vol.198
, pp. 693-704
-
-
Schnappinger, D.1
Ehrt, S.2
Voskuil, M.I.3
Liu, Y.4
Mangan, J.A.5
Monahan, I.M.6
Dolganov, G.7
Efron, B.8
Butcher, P.D.9
Nathan, C.10
Schoolnik, G.K.11
-
56
-
-
13544265458
-
Modeling hybridoma cell metabolism using a generic genome-scale metabolic model of Mus musculus
-
Sheikh K, Forster J, Nielsen LK (2005) Modeling hybridoma cell metabolism using a generic genome-scale metabolic model of Mus musculus. Biotechnol Prog 21: 112-121
-
(2005)
Biotechnol Prog
, vol.21
, pp. 112-121
-
-
Sheikh, K.1
Forster, J.2
Nielsen, L.K.3
-
57
-
-
27344432975
-
Changes in energy metabolism of Mycobacterium tuberculosis in mouse lung and under in vitro conditions affecting aerobic respiration
-
Shi L, Sohaskey CD, Kana BD, Dawes S, North RJ, Mizrahi V, Gennaro ML (2005) Changes in energy metabolism of Mycobacterium tuberculosis in mouse lung and under in vitro conditions affecting aerobic respiration. Proc Natl Acad Sci USA 102: 15629-15634
-
(2005)
Proc Natl Acad Sci USA
, vol.102
, pp. 15629-15634
-
-
Shi, L.1
Sohaskey, C.D.2
Kana, B.D.3
Dawes, S.4
North, R.J.5
Mizrahi, V.6
Gennaro, M.L.7
-
58
-
-
51349092391
-
Network-based prediction of human tissue-specific metabolism
-
Shlomi T, Cabili MN, Herrgard MJ, Palsson BO, Ruppin E (2008) Network-based prediction of human tissue-specific metabolism. Nat Biotechnol 26: 1003-1010
-
(2008)
Nat Biotechnol
, vol.26
, pp. 1003-1010
-
-
Shlomi, T.1
Cabili, M.N.2
Herrgard, M.J.3
Palsson, B.O.4
Ruppin, E.5
-
59
-
-
41949097208
-
Nitrate enhances the survival of Mycobacterium tuberculosis during inhibition of respiration
-
Sohaskey CD (2008) Nitrate enhances the survival of Mycobacterium tuberculosis during inhibition of respiration. J Bacteriol 190: 2981-2986
-
(2008)
J Bacteriol
, vol.190
, pp. 2981-2986
-
-
Sohaskey, C.D.1
-
60
-
-
0242287052
-
Statistical methods for identifying differentially expressed genes in DNA microarrays
-
Storey JD, Tibshirani R (2003) Statistical methods for identifying differentially expressed genes in DNA microarrays. Methods Mol Biol 224: 149-157
-
(2003)
Methods Mol Biol
, vol.224
, pp. 149-157
-
-
Storey, J.D.1
Tibshirani, R.2
-
61
-
-
1842585499
-
The temporal expression profile of Mycobacteriumtuberculosis infection in mice
-
Talaat AM, Lyons R, Howard ST, Johnston SA (2004) The temporal expression profile of Mycobacteriumtuberculosis infection in mice. Proc Natl Acad Sci USA 101: 4602-4607
-
(2004)
Proc Natl Acad Sci USA
, vol.101
, pp. 4602-4607
-
-
Talaat, A.M.1
Lyons, R.2
Howard, S.T.3
Johnston, S.A.4
-
62
-
-
23644452487
-
An expanded metabolic reconstruction of Helicobacter pylori (iIT341 GSM/GPR): An in silico genome-scale characterization of single and double deletion mutants
-
Thiele I, Vo TD, Price ND, Palsson B (2005) An expanded metabolic reconstruction of Helicobacter pylori (iIT341 GSM/GPR): an in silico genome-scale characterization of single and double deletion mutants. J Bacteriol 187: 5818-5830
-
(2005)
J Bacteriol
, vol.187
, pp. 5818-5830
-
-
Thiele, I.1
Vo, T.D.2
Price, N.D.3
Palsson, B.4
-
63
-
-
58149216756
-
Identification of tuberculosis susceptibility genes with human macrophage gene expression profiles
-
Thuong NT, Dunstan SJ, Chau TT, Thorsson V, Simmons CP, Quyen NT, Thwaites GE, Thi Ngoc Lan N, Hibberd M, Teo YY, Seielstad M, Aderem A, Farrar JJ, Hawn TR (2008) Identification of tuberculosis susceptibility genes with human macrophage gene expression profiles. PLoS Pathog 4: e1000229
-
(2008)
PLoS Pathog
, vol.4
-
-
Thuong, N.T.1
Dunstan, S.J.2
Chau, T.T.3
Thorsson, V.4
Simmons, C.P.5
Quyen, N.T.6
Thwaites, G.E.7
Thi Ngoc Lan, N.8
Hibberd, M.9
Teo, Y.Y.10
Seielstad, M.11
Aderem, A.12
Farrar, J.J.13
Hawn, T.R.14
-
64
-
-
0028108519
-
Metabolic flux balancing: Basic concepts, scientific and practical use
-
Varma A, Palsson BO (1994) Metabolic flux balancing: basic concepts, scientific and practical use. Nat Biotechnol 12: 994-998
-
(1994)
Nat Biotechnol
, vol.12
, pp. 994-998
-
-
Varma, A.1
Palsson, B.O.2
-
65
-
-
3042838120
-
Mycobacterium tuberculosis gene expression during adaptation to stationary phase and low-oxygen dormancy
-
Voskuil MI, Visconti KC, Schoolnik GK (2004) Mycobacterium tuberculosis gene expression during adaptation to stationary phase and low-oxygen dormancy. Tuberculosis (Edinb) 84: 218-227
-
(2004)
Tuberculosis (Edinb)
, vol.84
, pp. 218-227
-
-
Voskuil, M.I.1
Visconti, K.C.2
Schoolnik, G.K.3
-
66
-
-
12444344631
-
Elemental analysis of Mycobacteriumavium-, Mycobacteriumtuberculosis-, and Mycobacterium smegmatis-containing phagosomes indicates pathogen-induced microenvironments within the host cell0s endosomal system
-
Wagner D, Maser J, Lai B, Cai Z, Barry III CE, Honer Zu Bentrup K, Russell DG, Bermudez LE (2005) Elemental analysis of Mycobacteriumavium-, Mycobacteriumtuberculosis-, and Mycobacterium smegmatis-containing phagosomes indicates pathogen-induced microenvironments within the host cell0s endosomal system. J Immunol 174: 1491-1500
-
(2005)
J Immunol
, vol.174
, pp. 1491-1500
-
-
Wagner, D.1
Maser, J.2
Lai, B.3
Cai, Z.4
Barry III, C.E.5
Honer Zu Bentrup, K.6
Russell, D.G.7
Bermudez, L.E.8
-
67
-
-
12444279265
-
On the origin of cancer cells
-
Warburg O (1956) On the origin of cancer cells. Science 123: 309-314
-
(1956)
Science
, vol.123
, pp. 309-314
-
-
Warburg, O.1
-
69
-
-
33947243477
-
Human membrane transporter database: A web-accessible relational database for drug transport studies and pharmacogenomics
-
Yan Q, Sadee W (2000) Human membrane transporter database: a web-accessible relational database for drug transport studies and pharmacogenomics. AAPS PharmSci 2: E20
-
(2000)
AAPS PharmSci
, vol.2
-
-
Yan, Q.1
Sadee, W.2
-
70
-
-
0032483025
-
The 16-kDa a-crystallin (Acr) protein of Mycobacterium tuberculosis is required for growth in macrophages
-
Yuan Y, Crane DD, Simpson RM, Zhu Y, Hickey MJ, Sherman DR, Barry III CE (1998) The 16-kDa a-crystallin (Acr) protein of Mycobacterium tuberculosis is required for growth in macrophages. Proc Natl Acad Sci USA 95: 9578-9583
-
(1998)
Proc Natl Acad Sci USA
, vol.95
, pp. 9578-9583
-
-
Yuan, Y.1
Crane, D.D.2
Simpson, R.M.3
Zhu, Y.4
Hickey, M.J.5
Sherman, D.R.6
Barry III, C.E.7
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