메뉴 건너뛰기




Volumn 10, Issue 89, 2013, Pages

Biphasic responses in multi-site phosphorylation systems

Author keywords

Enzyme sequestration; Multi site modification; Non monotonic response; Shared enzyme; Signal processing; Substrate sequestration

Indexed keywords

ENZYMES; SIGNAL PROCESSING;

EID: 84899771032     PISSN: 17425689     EISSN: 17425662     Source Type: Journal    
DOI: 10.1098/rsif.2013.0742     Document Type: Article
Times cited : (16)

References (42)
  • 1
    • 0036901003 scopus 로고    scopus 로고
    • Multisite phosphorylation provides sophisticated regulation of transcription factors
    • DOI 10.1016/S0968-0004(02)02207-7, PII S0968000402022077
    • Holmberg CI, Tran SEF, Eriksson JE, Sistonen L. 2002 Multisite phosphorylation provides sophisticated regulation of transcription factors. Trends Biochem. Sci. 27, 619-627. (doi:10.1016/S0968-0004 (02)02207-7). (Pubitemid 35435311)
    • (2002) Trends in Biochemical Sciences , vol.27 , Issue.12 , pp. 619-627
    • Holmberg, C.I.1    Tran, S.E.F.2    Eriksson, J.E.3    Sistonen, L.4
  • 3
    • 36749021268 scopus 로고    scopus 로고
    • Dynamic regulation of the voltage-gated Kv2.1 potassium channel by multisite phosphorylation
    • Mohapatra D, Park K, Trimmer J. 2002 Dynamic regulation of the voltage-gated Kv2.1 potassium channel by multisite phosphorylation. Biochem. Soc. Trans. 35, 1064.
    • (2002) Biochem. Soc. Trans. , vol.35 , pp. 1064
    • Mohapatra, D.1    Park, K.2    Trimmer, J.3
  • 4
    • 33745145846 scopus 로고    scopus 로고
    • Transcriptional and post-transcriptional regulation of the circadian clock of cyanobacteria and Neurospora
    • doi:10.1101/gad.1410406
    • Brunner M, Schafmeier T. 2006 Transcriptional and post-transcriptional regulation of the circadian clock of cyanobacteria and Neurospora. Genes Dev. 20, 1061-1074. (doi:10.1101/gad.1410406).
    • (2006) Genes Dev. , vol.20 , pp. 1061-1074
    • Brunner, M.1    Schafmeier, T.2
  • 5
    • 33846820252 scopus 로고    scopus 로고
    • Versatile regulation of multisite protein phosphorylation by the order of phosphate processing and protein-protein interactions
    • DOI 10.1111/j.1742-4658.2007.05653.x
    • Salazar C, Hofer T. 2007 Versatile regulation of multisite protein phosphorylation by the order of phosphate processing and protein-protein interactions. FEBS J. 274, 1046-1061. (doi:10.1111/j.1742-4658.2007.05653.x). (Pubitemid 46204423)
    • (2007) FEBS Journal , vol.274 , Issue.4 , pp. 1046-1061
    • Salazar, C.1    Hofer, T.2
  • 6
    • 0033532281 scopus 로고    scopus 로고
    • Roles of phosphorylation sites in regulating activity of the transcription factor pho4
    • DOI 10.1126/science.284.5416.977
    • Komeili A, O'Shea E. 1999 Roles of phosphorylation sites in regulating activity of the transcription factor Pho4. Science 284, 977-980. (doi:10.1126/science. 284.5416.977). (Pubitemid 29288439)
    • (1999) Science , vol.284 , Issue.5416 , pp. 977-980
    • Komeili, A.1    O'Shea, E.K.2
  • 7
    • 66249102308 scopus 로고    scopus 로고
    • Multisite protein phosphorylation: From molecular mechanisms to kinetic models
    • doi:10. 1111/j.1742-4658.2009.07027.x
    • Salazar C, Hofer T. 2009 Multisite protein phosphorylation: from molecular mechanisms to kinetic models. FEBS J. 276, 3177-319. (doi:10. 1111/j.1742-4658.2009.07027.x).
    • (2009) FEBS J. , vol.276 , pp. 3177-3319
    • Salazar, C.1    Hofer, T.2
  • 8
    • 0035943595 scopus 로고    scopus 로고
    • The mechanism of dephosphorylation of extracellular signal-regulated kinase 2 by mitogen-activated protein kinase phosphatase
    • doi:10.1074/jbc.M103369200
    • Zhao Y., Zhang Z., 2001 The mechanism of dephosphorylation of extracellular signal-regulated kinase 2 by mitogen-activated protein kinase phosphatase . J. Biol. Chem. 276, 32382-32391. (doi:10.1074/jbc.M103369200).
    • (2001) J. Biol. Chem. , vol.276 , pp. 32382-32391
    • Zhao, Y.1    Zhang, Z.2
  • 9
    • 0035966288 scopus 로고    scopus 로고
    • Multisite phosphorylation and the countdown to S phase
    • DOI 10.1016/S0092-8674(01)00620-1
    • Deshaies R, Ferrell J. 2001 Multisite phosphorylation and the countdown to s phase. Cell 107, 819-822. (doi:10.1016/S0092-8674(01)00620-1). (Pubitemid 34084972)
    • (2001) Cell , vol.107 , Issue.7 , pp. 819-822
    • Deshaies, R.J.1    Ferrell Jr., J.E.2
  • 10
    • 0030972112 scopus 로고    scopus 로고
    • The activating dual phosphorylation of MAPK by MEK is nonprocessive
    • DOI 10.1021/bi970535d
    • Burack W, Sturgill T. 1997 The activating dual phosphorylation of MAPK by MEK is nonprocessive. Biochemistry 36, 5929-5933. (doi:10.1021/bi970535d). (Pubitemid 27257857)
    • (1997) Biochemistry , vol.36 , Issue.20 , pp. 5929-5933
    • Burack, W.R.1    Sturgill, T.W.2
  • 11
    • 0021984610 scopus 로고
    • Random phosphorylation of the two heads of thymus myosin and the independent stimulation of their actin-activated ATPases
    • Wagner P, Vu N, George J. 1985 Random phosphorylation of the two heads of thymus myosin and the independent stimulation of their actin-activated ATPases. J. Biol. Chem. 260, 8084-8089. (Pubitemid 15231457)
    • (1985) Journal of Biological Chemistry , vol.260 , Issue.13 , pp. 8084-8089
    • Wagner, P.D.1    Vu, N.D.2    George, J.N.3
  • 12
    • 0242521470 scopus 로고    scopus 로고
    • Phosphorylation of Bim-EL by Erk1/2 on serine 69 promotes its degradation via the proteasome pathway and regulates its proapoptotic function
    • Luciano F, Jacquel A, Colosetti P, Herrant M, Cagnol S, Pages G, Auberger P. 2003 Phosphorylation of Bim-EL by Erk1/2 on serine 69 promotes its degradation via the proteasome pathway and regulates its proapoptotic function. Oncogene 22, 6785-6793. (doi:10.1038/sj.onc.1206792). (Pubitemid 37372218)
    • (2003) Oncogene , vol.22 , Issue.42 REV. ISS. 4 , pp. 6785-6793
    • Luciano, F.1    Jacquel, A.2    Colosetti, P.3    Herrant, M.4    Cagnol, S.5    Pages, G.6    Auberger, P.7
  • 13
    • 0035969559 scopus 로고    scopus 로고
    • Multisite phosphorylation of a CDK inhibitor sets a threshold for the onset of DNA replication
    • DOI 10.1038/35107009
    • Nash P, Tang X, Orlicky S, Chen Q, Gertler F, Mendenhall M, Sicheri F, Pawson T, Tyers M. 2001 Multisite phosphorylation of a CDK inhibitor sets a threshold for the onset of DNA replication. Nature 414, 514-521. (doi:10.1038/35107009). (Pubitemid 33131529)
    • (2001) Nature , vol.414 , Issue.6863 , pp. 514-521
    • Nash, P.1    Tang, X.2    Orlicky, S.3    Chen, Q.4    Gertler, F.B.5    Mendenhall, M.D.6    Sicheri, F.7    Pawson, T.8    Tyers, M.9
  • 14
    • 68149154791 scopus 로고    scopus 로고
    • MAPK cascade signalling networks in plant defence
    • doi:10.1016/j.pbi.2009. 06.008
    • Pitzschke A, Schikora A, Hirt H. 2009 MAPK cascade signalling networks in plant defence. Curr. Opin. Plant Biol. 12, 421-426. (doi:10.1016/j.pbi.2009. 06.008).
    • (2009) Curr. Opin. Plant Biol. , vol.12 , pp. 421-426
    • Pitzschke, A.1    Schikora, A.2    Hirt, H.3
  • 15
    • 0347997608 scopus 로고    scopus 로고
    • MAPK signal pathways in the regulation of cell proliferation in mammalian cells
    • Zhang W, Liu H. 2002 MAPK signal pathways in the regulation of cell proliferation in mammalian cells. Cell Res. 12, 9-18. (doi:10.1038/sj.cr. 7290105). (Pubitemid 135708299)
    • (2002) Cell Research , vol.12 , Issue.1 , pp. 9-18
    • Wei, Z.1    Liu, H.T.2
  • 16
    • 76749088358 scopus 로고    scopus 로고
    • Pathological roles of MAPK signaling pathways in human diseases
    • doi:10.1016/j. bbadis.2009.12.009
    • Kim E, Choi E. 2010 Pathological roles of MAPK signaling pathways in human diseases. Biochim. Biophys. Acta 1802, 396-405. (doi:10.1016/j. bbadis.2009.12.009).
    • (2010) Biochim. Biophys. Acta , vol.1802 , pp. 396-405
    • Kim, E.1    Choi, E.2
  • 17
    • 84864816997 scopus 로고    scopus 로고
    • Protein phosphorylation from the perspective of systems biology
    • doi:10.1016/j.copbio.2011.11.008
    • Derouiche A, Cousin C, Mijakovic I. 2012 Protein phosphorylation from the perspective of systems biology. Curr. Opin. Biotechnol. 23, 585-590. (doi:10.1016/j.copbio.2011.11.008).
    • (2012) Curr. Opin. Biotechnol. , vol.23 , pp. 585-590
    • Derouiche, A.1    Cousin, C.2    Mijakovic, I.3
  • 18
    • 77952956167 scopus 로고    scopus 로고
    • Decoding signalling networks by mass spectrometry-based proteomics
    • doi:10.1038/nrm2900
    • Choudhary C, Mann M. 2010 Decoding signalling networks by mass spectrometry-based proteomics. Nat. Rev. Mol. Cell. Biol. 6, 427-439. (doi:10.1038/nrm2900).
    • (2010) Nat. Rev. Mol. Cell., Biol. , vol.6 , pp. 427-439
    • Choudhary, C.1    Mann, M.2
  • 19
    • 77956238040 scopus 로고    scopus 로고
    • A model of yeast cell-cycle regulation based on multisite phosphorylation
    • doi:10.1038/msb.2010.55
    • Barik D, Baumann W, Paul M, Novak B, Tyson J. 2010 A model of yeast cell-cycle regulation based on multisite phosphorylation. Mol. Syst. Biol. 6, 405. (doi:10.1038/msb.2010.55).
    • (2010) Mol. Syst. Biol. , vol.6 , pp. 405
    • Barik, D.1    Baumann, W.2    Paul, M.3    Novak, B.4    Tyson, J.5
  • 20
    • 29144435996 scopus 로고    scopus 로고
    • Computational modelling of the receptor-tyrosine-kinase-activated MAPK pathway
    • DOI 10.1042/BJ20050908
    • Orton R, Sturm O, Vyshemirsky V, Calder M, Gilbert D, Kolch W. 2005 Computational modelling of the receptor-tyrosine-kinase-activated MAPK pathway. Biochem. J. 392, 249-261. (doi:10.1042/BJ20050908). (Pubitemid 41796513)
    • (2005) Biochemical Journal , vol.392 , Issue.2 , pp. 249-261
    • Orton, R.J.1    Sturm, O.E.2    Vyshemirsky, V.3    Calder, M.4    Gilbert, D.R.5    Kolch, W.6
  • 21
    • 78650788495 scopus 로고    scopus 로고
    • Multisite phosphorylation provides an effective and flexible mechanism for switch-like protein degradation
    • doi:10.1371/journal.pone.0014029
    • Varedi KS, Ventura A, Merajver S, Lin X. 2010 Multisite phosphorylation provides an effective and flexible mechanism for switch-like protein degradation. PLoS ONE 5, e14029. (doi:10.1371/journal.pone.0014029).
    • (2010) PLoS ONE , vol.5
    • Varedi, K.S.1    Ventura, A.2    Merajver, S.3    Lin, X.4
  • 22
    • 58749090027 scopus 로고    scopus 로고
    • The geometry of multisite phosphorylation
    • doi:10.1529/biophysj.108.140632
    • Manrai A, Gunawardena J. 2008 The geometry of multisite phosphorylation. Biophys. J. 95, 5533-5543. (doi:10.1529/biophysj.108.140632).
    • (2008) Biophys. J. , vol.95 , pp. 5533-5543
    • Manrai, A.1    Gunawardena, J.2
  • 24
    • 0842288229 scopus 로고    scopus 로고
    • Signaling switches and bistability arising from multisite phosphorylation in protein kinase cascades
    • DOI 10.1083/jcb.200308060
    • Markevich N, Hoek J, Kholodenko B. 2004 Signaling switches and bistability arising from multisite phosphorylation in protein kinase cascades. J. Cell. Biol. 164, 353-359. (doi:10.1083/jcb.200308060). (Pubitemid 38174763)
    • (2004) Journal of Cell Biology , vol.164 , Issue.3 , pp. 353-359
    • Markevich, N.I.1    Hoek, J.B.2    Kholodenko, B.N.3
  • 25
    • 67650360968 scopus 로고    scopus 로고
    • Unlimited multistability in multisite phosphorylation systems
    • doi:10.1038/nature08102
    • Thomson M, Gunawardena J. 2009 Unlimited multistability in multisite phosphorylation systems. Nature 460, 274-277. (doi:10.1038/nature08102).
    • (2009) Nature , vol.460 , pp. 274-277
    • Thomson, M.1    Gunawardena, J.2
  • 26
    • 77951639384 scopus 로고    scopus 로고
    • A combination of multisite phosphorylation and substrate sequestration produces switchlike responses
    • doi:10.1016/j.bpj.2009.12.4307
    • Liu I, Bardwell L, Nie Q. 2010 A combination of multisite phosphorylation and substrate sequestration produces switchlike responses. Biophys. J. 98, 1396- 1407. (doi:10.1016/j.bpj.2009.12.4307).
    • (2010) Biophys. J. , vol.98 , pp. 1396-1407
    • Liu, I.1    Bardwell, L.2    Nie, Q.3
  • 27
    • 84864464249 scopus 로고    scopus 로고
    • The heparan sulfate co-receptor and the concentration of fibroblast growth factor-2 independently elicit different signalling patterns from the fibroblast growth factor receptor
    • doi:10.1186/1478-811X-8-14
    • Zhu H, Duchesne L, Rudland P, Fernig D. 2010 The heparan sulfate co-receptor and the concentration of fibroblast growth factor-2 independently elicit different signalling patterns from the fibroblast growth factor receptor. Cell Commun. Signal. 8, 14. (doi:10.1186/1478-811X-8-14).
    • (2010) Cell Commun. Signal. , vol.8 , pp. 14
    • Zhu, H.1    Duchesne, L.2    Rudland, P.3    Fernig, D.4
  • 28
    • 81055137333 scopus 로고    scopus 로고
    • A quantitative model for ordered Cdk substrate dephosphorylation during mitotic exit
    • doi:10.1016/j.cell.2011.09.047
    • Bouchoux C, Uhlmann F. 2011 A quantitative model for ordered Cdk substrate dephosphorylation during mitotic exit. Cell 147, 803-814. (doi:10.1016/j.cell.2011.09.047).
    • (2011) Cell , vol.147 , pp. 803-814
    • Bouchoux, C.1    Uhlmann, F.2
  • 29
    • 0033198916 scopus 로고    scopus 로고
    • Multisite dephosphorylation and desensitization of conventional protein kinase C isotypes
    • DOI 10.1042/0264-6021:3420337
    • Hansra G, Garcia-Paramio P, Prevostel C, Whelan R, Bornancin F, Parker P. 1999 Multisite dephosphorylation and desensitization of conventional protein kinase C isotypes. Biochem. J.342, 337-344. (doi:10.1042/0264-6021:3420337). (Pubitemid 29425355)
    • (1999) Biochemical Journal , vol.342 , Issue.2 , pp. 337-344
    • Hansra, G.1    Garcia-Paramio, P.2    Prevostel, C.3    Whelan, R.D.H.4    Bornancin, F.5    Parker, P.J.6
  • 30
    • 61649127812 scopus 로고    scopus 로고
    • From promiscuity to precision: Protein phosphatases get a makeover
    • doi:10.1016/j.molcel.2009.02.015
    • Virshup D, Shenolikar S. 2009 From promiscuity to precision: protein phosphatases get a makeover. Mol. Cell 33, 537-545. (doi:10.1016/j.molcel.2009. 02.015).
    • (2009) Mol. Cell , vol.33 , pp. 537-545
    • Virshup, D.1    Shenolikar, S.2
  • 31
    • 0028952722 scopus 로고
    • Significance of low serum alkaline phosphatase activity in a predominantly adult male population
    • Lum G. 1995 Significance of low serum alkaline phosphatase activity in a predominantly adult male population. Clin. Chem. 41, 515-518.
    • (1995) Clin. Chem. , vol.41 , pp. 515-518
    • Lum, G.1
  • 32
    • 84870539840 scopus 로고    scopus 로고
    • Crosstalk and competition in signaling networks
    • doi:10.1016/j.bpj.2012.10.006
    • Rowland M, Fontana W, Deeds E. 2012 Crosstalk and competition in signaling networks. Biophys. J. 103, 2389-2398. (doi:10.1016/j.bpj.2012.10.006).
    • (2012) Biophys. J. , vol.103 , pp. 2389-2398
    • Rowland, M.1    Fontana, W.2    Deeds, E.3
  • 33
    • 0026661583 scopus 로고
    • Signal integration at the level of protein kinases, protein phosphatases and their substrates
    • doi:10.1016/0968-0004(92)90010-7
    • Cohen P. 1992 Signal integration at the level of protein kinases, protein phosphatases and their substrates. Trends Biochem. Sci. 17, 408-413. (doi:10.1016/0968-0004(92)90010-7).
    • (1992) Trends Biochem. Sci. , vol.17 , pp. 408-413
    • Cohen, P.1
  • 34
    • 0033485886 scopus 로고    scopus 로고
    • Spatial compartmentalization in the regulation of glucose metabolism by insulin
    • doi:10.1016/S1043-2760 (99)00201-5
    • Brady M, Pessin J, Saltiel A. 1999 Spatial compartmentalization in the regulation of glucose metabolism by insulin. Trends Endocrinol. Metab. 10, 408-413. (doi:10.1016/S1043-2760 (99)00201-5).
    • (1999) Trends Endocrinol. Metab. , vol.10 , pp. 408-413
    • Brady, M.1    Pessin, J.2    Saltiel, A.3
  • 35
    • 79959652892 scopus 로고    scopus 로고
    • The coupling of pathways and processes through shared components
    • doi:10.1186/1752-0509-5-103
    • Seaton D, Krishnan J. 2011 The coupling of pathways and processes through shared components. BMC Syst. Biol. 5, 103. (doi:10.1186/1752-0509-5-103).
    • (2011) BMC Syst. Biol. , vol.5 , pp. 103
    • Seaton, D.1    Krishnan, J.2
  • 37
    • 77649190430 scopus 로고    scopus 로고
    • MAPK substrate competition integrates patterning signals in the Drosophila embryo
    • doi:10.1016/j. cub.2010.01.019
    • Kim Y, Coppey M, Grossman R, Ajuria L, Jimenez G, Shvartsman S. 2010 MAPK substrate competition integrates patterning signals in the Drosophila embryo. Curr. Biol. 20, 446-451. (doi:10.1016/j. cub.2010.01.019).
    • (2010) Curr. Biol. , vol.20 , pp. 446-451
    • Kim, Y.1    Coppey, M.2    Grossman, R.3    Ajuria, L.4    Jimenez, G.5    Shvartsman, S.6
  • 38
    • 84880538437 scopus 로고    scopus 로고
    • Signaling to extracellular signal-regulated kinase from erbb1 kinase and protein kinase C: Feedback, heterogeneity, and gating
    • doi:10.1074/jbc.M113.455345
    • Perrett R, Fowkes R, Caunt C, Tsaneva-Atanasova K, Bowsher C, McArdle C. 2013 Signaling to extracellular signal-regulated kinase from erbb1 kinase and protein kinase C: feedback, heterogeneity, and gating. J. Biol. Chem. 288, 21 001-21 014. (doi:10.1074/jbc.M113.455345).
    • (2013) J. Biol. Chem. , vol.288 , pp. 21001-21014
    • Perrett, R.1    Fowkes, R.2    Caunt, C.3    Tsaneva-Atanasova, K.4    Bowsher, C.5    Mcardle, C.6
  • 39
    • 67849099654 scopus 로고    scopus 로고
    • Biphasic effects of forskolin on tau phosphorylation and spatial memory in rats
    • doi:10.3233/JAD-2009-1088
    • Tian Q et al. 2009 Biphasic effects of forskolin on tau phosphorylation and spatial memory in rats. J. Alzheimers Dis. 17, 631-642. (doi:10.3233/JAD- 2009-1088).
    • (2009) J. Alzheimers Dis. , vol.17 , pp. 631-642
    • Tian, Q.1
  • 40
    • 0034705227 scopus 로고    scopus 로고
    • Scaffold proteins may biphasically affect the levels of mitogen- activated protein kinase signaling and reduce its threshold properties
    • DOI 10.1073/pnas.97.11.5818
    • Levchenko A, Bruck J, Sternberg P. 2000 Scaffold proteins may biphasically affect the levels of mitogen-activated protein kinase signaling and reduce its threshold properties. Proc. Natl Acad. Sci. USA 97, 5818-5823. (doi:10.1073/pnas.97. 11.5818). (Pubitemid 30367482)
    • (2000) Proceedings of the National Academy of Sciences of the United States of America , vol.97 , Issue.11 , pp. 5818-5823
    • Levchenko, A.1    Bruck, J.2    Sternberg, P.W.3
  • 41
    • 58149145777 scopus 로고    scopus 로고
    • The biphasic behavior of incoherent feed-forward loops in biomolecular regulatory networks
    • doi:10.1002/bies.20839
    • Kim D, Kwon Y, Cho K. 2008 The biphasic behavior of incoherent feed-forward loops in biomolecular regulatory networks. BioEssays 30, 1204-1211. (doi:10.1002/bies.20839).
    • (2008) BioEssays , vol.30 , pp. 1204-1211
    • Kim, D.1    Kwon, Y.2    Cho, K.3
  • 42
    • 0034383949 scopus 로고    scopus 로고
    • The regulation of protein function by multisite phosphorylation: A 25 year update
    • doi:10.1016/S0968- 0004(00)01712-6
    • Cohen P. 2000 The regulation of protein function by multisite phosphorylation: a 25 year update. Trends Biochem. Sci. 25, 596-601. (doi:10.1016/S0968- 0004(00)01712-6).
    • (2000) Trends Biochem. Sci. , vol.25 , pp. 596-601
    • Cohen, P.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.