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Biopolymers

Volumn 101, Issue 7, 2014, Pages 720-732

Shape readout of AT-rich DNA by carbohydrates

(3) Kumar, Sunil a Newby Spano, Meredith a Arya, Dev P a

a CLEMSON UNIVERSITY (United States)

Author keywords

carbohydrate scaffold; DNA major groove; shape recognition

Indexed keywords

BINDING ENERGY; CARBOHYDRATES; DIFFERENTIAL SCANNING CALORIMETRY; DNA; GENE EXPRESSION; IONIC STRENGTH; LIGANDS; MOLECULES; SCAFFOLDS; TITRATION;

BINDING AFFINITIES; BINDING ENTHALPIES; IONIC STRENGTH DEPENDENCE; ISOTHERMAL TITRATION CALORIMETRY; SALT CONCENTRATION; SHAPE RECOGNITION; THERMAL DENATURATIONS; THERMODYNAMIC STUDIES;

DNA SEQUENCES;

CARBOHYDRATE; DIMER; DNA; DOUBLE STRANDED DNA; NEOMYCIN; PROTON; OLIGODEOXYRIBONUCLEOTIDE;

ARTICLE; BINDING AFFINITY; CIRCULAR DICHROISM; DIFFERENTIAL SCANNING CALORIMETRY; DNA BINDING; DNA CONFORMATION; DNA DENATURATION; DNA HELIX; DNA SEQUENCE; ENTHALPY; ENTROPY; IONIC STRENGTH; ISOTHERMAL TITRATION CALORIMETRY; PH; PROTON TRANSPORT; STATIC ELECTRICITY; STOICHIOMETRY; TEMPERATURE; THERMODYNAMICS; ALGORITHM; AT RICH SEQUENCE; BINDING SITE; CARBOHYDRATE ANALYSIS; CHEMISTRY; CONFORMATION; GC RICH SEQUENCE; KINETICS; METABOLISM; MOLECULAR GENETICS; ULTRAVIOLET SPECTROPHOTOMETRY;

ALGORITHMS; AT RICH SEQUENCE; BINDING SITES; CALORIMETRY, DIFFERENTIAL SCANNING; CARBOHYDRATE SEQUENCE; CARBOHYDRATES; CIRCULAR DICHROISM; DNA; GC RICH SEQUENCE; KINETICS; MOLECULAR SEQUENCE DATA; NEOMYCIN; NUCLEIC ACID CONFORMATION; OLIGODEOXYRIBONUCLEOTIDES; SPECTROPHOTOMETRY, ULTRAVIOLET; THERMODYNAMICS;

EID: 84898942219 PISSN: 00063525 EISSN: 10970282 Source Type: Journal
DOI: 10.1002/bip.22448 Document Type: Article

Times cited : (7)

References (62)

1
- 0034830898
- Dervan, P. B., Bioorg Med Chem 2001, 9, 2215-2235.
- (2001) Bioorg Med Chem , vol.9 , pp. 2215-2235
- Dervan, P.B.¹

2
- 0034951136
- Neidle, S., Nat Prod Rep 2001, 18, 291-309.
- (2001) Nat Prod Rep , vol.18 , pp. 291-309
- Neidle, S.¹

3
- 0020954110
- Marky, L. A.; Snyder, J. G.; Remeta, D. P.; Breslauer, K., J. J Biomol Struct Dyn 1983, 1, 487-507.
- (1983) J. J Biomol Struct Dyn , vol.1 , pp. 487-507
- Marky, L.A.¹ Snyder, J.G.² Remeta, D.P.³ Breslauer, K.⁴

4
- 0030003572
- Chaires, J. B.; Satyanarayana, S.; Suh, D.; Fokt, I.; Przewloka, T.; Priebe, W., Biochemistry 1996, 35, 2047-2053.
- (1996) Biochemistry , vol.35 , pp. 2047-2053
- Chaires, J.B.¹ Satyanarayana, S.² Suh, D.³ Fokt, I.⁴ Przewloka, T.⁵ Priebe, W.⁶

5
- 4143080522
- Chaires, J. B., Biopolymers 1997, 44, 201-215.
- (1997) Biopolymers , vol.44 , pp. 201-215
- Chaires, J.B.¹

6
- 0034536719
- Lane, A. N.; Jenkins, T. C., Q Rev Biophys 2000, 33, 255-306.
- (2000) Q Rev Biophys , vol.33 , pp. 255-306
- Lane, A.N.¹ Jenkins, T.C.²

7
- 0036647051
- Haq, I., Arch Biochem Biophys 2002, 403, 1-15.
- (2002) Arch Biochem Biophys , vol.403 , pp. 1-15
- Haq, I.¹

8
- 79951591766
- Arya, D. P., Acc Chem Res 2011, 44, 134-146.
- (2011) Acc Chem Res , vol.44 , pp. 134-146
- Arya, D.P.¹

9
- 79955927721
- Kumar, S.; Xue, L.; Arya, D. P., J Am Chem Soc 2011, 133, 7361-7375.
- (2011) J Am Chem Soc , vol.133 , pp. 7361-7375
- Kumar, S.¹ Xue, L.² Arya, D.P.³

10
- 74949121427
- Willis, B.; Arya, D. P., Biochemistry 2010, 49, 452-469.
- (2010) Biochemistry , vol.49 , pp. 452-469
- Willis, B.¹ Arya, D.P.²

11
- 79953706621
- Xue, L.; Ranjan, N.; Arya, D. P., Biochemistry 2011, 50, 2838-2849.
- (2011) Biochemistry , vol.50 , pp. 2838-2849
- Xue, L.¹ Ranjan, N.² Arya, D.P.³

12
- 79960914931
- Kumar, S.; Arya, D. P., Bioorg Med Chem Lett 2011, 21, 4788-4792.
- (2011) Bioorg Med Chem Lett , vol.21 , pp. 4788-4792
- Kumar, S.¹ Arya, D.P.²

13
- 33748672701
- Willis, B,;, Arya, D. P., Biochemistry 2006, 45, 10217-10232.
- (2006) Biochemistry , vol.45 , pp. 10217-10232
- Willis, B.¹ Arya, D.P.²

14
- 33646015109
- Willis, B.; Arya, D. P., Curr Org Chem 2006, 10, 663-673.
- (2006) Curr Org Chem , vol.10 , pp. 663-673
- Willis, B.¹ Arya, D.P.²

15
- 0037414294
- Arya, D. P.; Micovic, L.; Charles, I.; Coffee, R. L., Jr,.; Willis, B.; Xue, L., J Am Chem Soc 2003, 125, 3733-3744.
- (2003) J Am Chem Soc , vol.125 , pp. 3733-3744
- Arya, D.P.¹ Micovic, L.² Charles, I.³ Coffee Jr., R.L.⁴ Willis, B.⁵ Xue, L.⁶

16
- 0034833770
- Arya, D. P.; Coffee, R. L., Jr,.; Willis, B.; Abramovitch, A. I., J Am Chem Soc 2001, 123, 5385-5395.
- (2001) J Am Chem Soc , vol.123 , pp. 5385-5395
- Arya, D.P.¹ Coffee Jr., R.L.² Willis, B.³ Abramovitch, I.A.⁴

17
- 0035823839
- Arya, D. P.; Coffee, R. L., Jr,.; Charles, I., J Am Chem Soc 2001, 123, 11093-11094.
- (2001) J Am Chem Soc , vol.123 , pp. 11093-11094
- Arya, D.P.¹ Coffee Jr., R.L.² Charles, I.³

18
- 0034605181
- Arya, D. P.; Coffee, R. L., Jr,. Bioorg Med Chem Lett 2000, 10, 1897-1899.
- (2000) Bioorg Med Chem Lett , vol.10 , pp. 1897-1899
- Arya, D.P.¹ Coffee, Jr.R.L.²

19
- 77951023778
- Xi, H.; Kumar, S.; Dosen-Micovic, L.; Arya, D. P., Biochimie 2010, 92, 514-529.
- (2010) Biochimie , vol.92 , pp. 514-529
- Xi, H.¹ Kumar, S.² Dosen-Micovic, L.³ Arya, D.P.⁴

20
- 47149091638
- Shaw, N. N.; Xi, H.; Arya, D. P., Bioorg Med Chem Lett 2008, 18, 4142-4145.
- (2008) Bioorg Med Chem Lett , vol.18 , pp. 4142-4145
- Shaw, N.N.¹ Xi, H.² Arya, D.P.³

21
- 45849138859
- Shaw, N. N.; Arya, D. P., Biochimie 2008, 90, 1026-1039.
- (2008) Biochimie , vol.90 , pp. 1026-1039
- Shaw, N.N.¹ Arya, D.P.²

22
- 78149438102
- Ranjan, N.; Andreasen, K. F.; Kumar, S.; Hyde-Volpe, D.; Arya, D. P., Biochemistry 2010, 49, 9891-9903.
- (2010) Biochemistry , vol.49 , pp. 9891-9903
- Ranjan, N.¹ Andreasen, K.F.² Kumar, S.³ Hyde-Volpe, D.⁴ Arya, D.P.⁵

23
- 0033007592
- Michael, K.; Wang, H.; Tor, Y., Bioorg Med Chem 1999, 7, 1361-1371.
- (1999) Bioorg Med Chem , vol.7 , pp. 1361-1371
- Michael, K.¹ Wang, H.² Tor, Y.³

24
- 8544250602
- Arya, D. P.; Coffee, R. L., Jr,.; Xue, L., Bioorg Med Chem Lett 2004, 14, 4643-4646.
- (2004) Bioorg Med Chem Lett , vol.14 , pp. 4643-4646
- Arya, D.P.¹ Coffee Jr., R.L.² Xue, L.³

25
- 67649710352
- Haran, T. E.; Mohanty, U., Q Rev Biophys 2009, 42, 41.
- (2009) Q Rev Biophys , vol.42 , pp. 41
- Haran, T.E.¹ Mohanty, U.²

26
- 0038713237
- Hud, N. V.; Plavec, J., Biopolymers 2003, 69, 144-158.
- (2003) Biopolymers , vol.69 , pp. 144-158
- Hud, N.V.¹ Plavec, J.²

27
- 0023473988
- Breslauer, K. J.; Remeta, D. P.; Chou, W. Y.; Ferrante, R.; Curry, J.; Zaunczkowski, D.; Snyder, J. G.; Marky, L. A., Proc Natl Acad Sci USA 1987, 84, 8922-8926.
- (1987) Proc Natl Acad Sci USA , vol.84 , pp. 8922-8926
- Breslauer, K.J.¹ Remeta, D.P.² Chou, W.Y.³ Ferrante, R.⁴ Curry, J.⁵ Zaunczkowski, D.⁶ Snyder, J.G.⁷ Marky, L.A.⁸

28
- 0023164663
- Alexeev, D. G.; Lipanov, A. A.; Ya. Skuratovskii, I., Nature 1987, 325, 821-823.
- (1987) Nature , vol.325 , pp. 821-823
- Alexeev, D.G.¹ Lipanov, A.A.² Ya. Skuratovskii, I.³

29
- 0034833710
- Boger, D. L.; Fink, B. E.; Brunette, S. R.; Tse, W. C.; Hedrick, M. P., J Am Chem Soc 2001, 123, 5878-5891.
- (2001) J Am Chem Soc , vol.123 , pp. 5878-5891
- Boger, D.L.¹ Fink, B.E.² Brunette, S.R.³ Tse, W.C.⁴ Hedrick, M.P.⁵

30
- 39749145842
- Watkins, D.; Hsiao, C.; Woods, K. K.; Koudelka, G. B.; Williams, L. D., Biochemistry (N. Y.) 2008, 47, 2325-2338.
- (2008) Biochemistry (N. Y.) , vol.47 , pp. 2325-2338
- Watkins, D.¹ Hsiao, C.² Woods, K.K.³ Koudelka, G.B.⁴ Williams, L.D.⁵

31
- 0015541536
- Ivanov, V. I.; Minchenkova, L. E.; Schyolkina, A. K.; Poletayev, A. I., Biopolymers 1973, 12, 89-110.
- (1973) Biopolymers , vol.12 , pp. 89-110
- Ivanov, V.I.¹ Minchenkova, L.E.² Schyolkina, A.K.³ Poletayev, A.I.⁴

32
- 0016705970
- Gray, D. M.; Ratliff, R. L., Biopolymers 1975, 14, 487-498.
- (1975) Biopolymers , vol.14 , pp. 487-498
- Gray, D.M.¹ Ratliff, R.L.²

33
- 0026767395
- Gray, D. M.; Ratliff, R. L.; Vaughan, M. R., Meth Enzymol 1992, 211, 389-406.
- (1992) Meth Enzymol , vol.211 , pp. 389-406
- Gray, D.M.¹ Ratliff, R.L.² Vaughan, M.R.³

34
- 0017116135
- McGhee, J. D., Biopolymers 1976, 15, 1345-1375.
- (1976) Biopolymers , vol.15 , pp. 1345-1375
- McGhee, J.D.¹

35
- 0032539641
- Leng, F.; Priebe, W.; Chaires, J. B., Biochemistry (N. Y.) 1998, 37, 1743-1753.
- (1998) Biochemistry (N. Y.) , vol.37 , pp. 1743-1753
- Leng, F.¹ Priebe, W.² Chaires, J.B.³

36
- 0344011113
- Leng, F.; Chaires, J. B.; Waring, M., J. Nucleic Acids Res 2003, 31, 6191-6197.
- (2003) J. Nucleic Acids Res , vol.31 , pp. 6191-6197
- Leng, F.¹ Chaires, J.B.² Waring, M.³

37
- 24044448633
- Cui, T.; Wei, S.; Brew, K.; Leng, F., J Mol Biol 2005, 352, 629-645.
- (2005) J Mol Biol , vol.352 , pp. 629-645
- Cui, T.¹ Wei, S.² Brew, K.³ Leng, F.⁴

38
- 33746312998
- Freyer, M. W.; Buscaglia, R.; Nguyen, B.; David Wilson, W.; Lewis, E. A., Anal Biochem 2006, 355, 259-266.
- (2006) Anal Biochem , vol.355 , pp. 259-266
- Freyer, M.W.¹ Buscaglia, R.² Nguyen, B.³ David Wilson, W.⁴ Lewis, E.A.⁵

39
- 34047211804
- Freyer, M. W.; Buscaglia, R.; Hollingsworth, A.; Ramos, J.; Blynn, M.; Pratt, R.; Wilson, W. D.; Lewis, E. A., Biophys J 2007, 92, 2516-2522.
- (2007) Biophys J , vol.92 , pp. 2516-2522
- Freyer, M.W.¹ Buscaglia, R.² Hollingsworth, A.³ Ramos, J.⁴ Blynn, M.⁵ Pratt, R.⁶ Wilson, W.D.⁷ Lewis, E.A.⁸

40
- 33846621126
- Freyer, M. W.; Buscaglia, R.; Cashman, D.; Hyslop, S.; Wilson, W. D.; Chaires, J. B.; Lewis, E. A., Biophys Chem 2007, 126, 186-196.
- (2007) Biophys Chem , vol.126 , pp. 186-196
- Freyer, M.W.¹ Buscaglia, R.² Cashman, D.³ Hyslop, S.⁴ Wilson, W.D.⁵ Chaires, J.B.⁶ Lewis, E.A.⁷

41
- 0023374851
- Marky, L. A.; Breslauer, K. J., Proc Natl Acad Sci USA 1987, 84, 4359-4363.
- (1987) Proc Natl Acad Sci USA , vol.84 , pp. 4359-4363
- Marky, L.A.¹ Breslauer, K.J.²

42
- 0021100881
- Marky, L. A.; Blumenfeld, K. S.; Breslauer, K., J. Nucleic Acids Res 1983, 11, 2857-2870.
- (1983) J. Nucleic Acids Res , vol.11 , pp. 2857-2870
- Marky, L.A.¹ Blumenfeld, K.S.² Breslauer, K.³

43
- 0037424612
- Kaul, M.; Barbieri, C. M.; Kerrigan, J. E.; Pilch, D. S., J Mol Biol 2003, 326, 1373-1387.
- (2003) J Mol Biol , vol.326 , pp. 1373-1387
- Kaul, M.¹ Barbieri, C.M.² Kerrigan, J.E.³ Pilch, D.S.⁴

44
- 0029112951
- Fisher, H. F.; Singh, N., In Methods in Enzymology; 1995; Vol. 259, pp 194-221.
- (1995) Methods in Enzymology , vol.259 , pp. 194-221
- Fisher, H.F.¹ Singh, N.²

45
- 0031571628
- Haq, I.; Ladbury, J. E.; Chowdhry, B. Z.; Jenkins, T. C.; Chaires, J. B., J Mol Biol 1997, 271, 244-257.
- (1997) J Mol Biol , vol.271 , pp. 244-257
- Haq, I.¹ Ladbury, J.E.² Chowdhry, B.Z.³ Jenkins, T.C.⁴ Chaires, J.B.⁵

46
- 0034616955
- Mazur, S.; Tanious, F. A.; Ding, D.; Kumar, A.; Boykin, D. W.; Simpson, I. J.; Neidle, S.; Wilson, W. D., J Mol Biol 2000, 300, 321-337.
- (2000) J Mol Biol , vol.300 , pp. 321-337
- Mazur, S.¹ Tanious, F.A.² Ding, D.³ Kumar, A.⁴ Boykin, D.W.⁵ Simpson, I.J.⁶ Neidle, S.⁷ Wilson, W.D.⁸

47
- 7744246534
- Barbieri, C. M.; Srinivasan, A. R.; Pilch, D. S., J Am Chem Soc 2004, 126, 14380-14388.
- (2004) J Am Chem Soc , vol.126 , pp. 14380-14388
- Barbieri, C.M.¹ Srinivasan, A.R.² Pilch, D.S.³

48
- 0034581523
- Haq, I.; Jenkins, T. C.; Chowdhry, B. Z.; Ren, J.; Chaires, J. B., Methods Enzymol 2000, 323, 373-405.
- (2000) Methods Enzymol , vol.323 , pp. 373-405
- Haq, I.¹ Jenkins, T.C.² Chowdhry, B.Z.³ Ren, J.⁴ Chaires, J.B.⁵

49
- 0343167423
- Haq, I.; Ladbury, J., J Mol Recognit 2000, 13, 188-197.
- (2000) J Mol Recognit , vol.13 , pp. 188-197
- Haq, I.¹ Ladbury, J.²

50
- 0026684671
- Spolar, R. S.; Livingstone, J. R.; Record, M. T., Biochemistry (N. Y.) 1992, 31, 3947-3955.
- (1992) Biochemistry (N. Y.) , vol.31 , pp. 3947-3955
- Spolar, R.S.¹ Livingstone, J.R.² Record, M.T.³

51
- 0037109117
- Barcelõ, F.; Capõ, D.; Portugal, J., Nucleic Acids Res 2002, 30, 4567-4573.
- (2002) Nucleic Acids Res , vol.30 , pp. 4567-4573
- Barcelõ, F.¹ Capõ, D.² Portugal, J.³

52
- 34249855554
- Barcelõ, F.; Scotta, C.; Ortiz-Lombardía, M.; Méndez, C.; Salas, J. A.; Portugal, J., Nucleic Acids Res 2007, 35, 2215-2226.
- (2007) Nucleic Acids Res , vol.35 , pp. 2215-2226
- Barcelõ, F.¹ Scotta, C.² Ortiz-Lombardía, M.³ Méndez, C.⁴ Salas, J.A.⁵ Portugal, J.⁶

53
- 0017820499
- Record, M. T., Jr,;, Anderson, C. F.; Lohman, T. M., Q Rev Biophys 1978, 11, 103-178.
- (1978) Q Rev Biophys , vol.11 , pp. 103-178
- Record, Jr.M.T.¹ Anderson, C.F.² Lohman, T.M.³

54
- 0028887796
- Olmsted, M. C.; Bond, J. P.; Anderson, C. F.; Record, M. T., Jr,. Biophys J 1995, 68, 634-647.
- (1995) Biophys J , vol.68 , pp. 634-647
- Olmsted, M.C.¹ Bond, J.P.² Anderson, C.F.³ Record, Jr.M.T.⁴

55
- 0033064802
- Zhang, W.; Ni, H.; Capp, M. W.; Anderson, C. F.; Lohman, T. M.; Record, M. T., Jr,. Biophys J 1999, 76, 1008-1017.
- (1999) Biophys J , vol.76 , pp. 1008-1017
- Zhang, W.¹ Ni, H.² Capp, M.W.³ Anderson, C.F.⁴ Lohman, T.M.⁵ Record, Jr.M.T.⁶

56
- 33645768556
- Nguyen, B.; Stanek, J.; Wilson, W. D., Biophys J 2006, 90, 1319-1328.
- (2006) Biophys J , vol.90 , pp. 1319-1328
- Nguyen, B.¹ Stanek, J.² Wilson, W.D.³

57
- 0032102816
- Chaires, J. B., Curr Opin Struct Biol 1998, 8, 314-320.
- (1998) Curr Opin Struct Biol , vol.8 , pp. 314-320
- Chaires, J.B.¹

58
- 0026323912
- Record, M. T., Jr,;, Ha, J. H.; Fisher, M. A., Methods Enzymol 1991, 208, 291-343.
- (1991) Methods Enzymol , vol.208 , pp. 291-343
- Record, Jr.M.T.¹ Ha, J.H.² Fisher, M.A.³

59
- 33747802145
- Chaires, J. B., Arch Biochem Biophys 2006, 453, 26-31.
- (2006) Arch Biochem Biophys , vol.453 , pp. 26-31
- Chaires, J.B.¹

60
- 0034435652
- Jen-Jacobson, L.; Engler, L. E.; Jacobson, L. A., Structure 2000, 8, 1015-1023.
- (2000) Structure , vol.8 , pp. 1015-1023
- Jen-Jacobson, L.¹ Engler, L.E.² Jacobson, L.A.³

61
- 84856009982
- Hamilton, P. L.; Arya, D. P., Nat Prod Rep 2012, 29, 134-143.
- (2012) Nat Prod Rep , vol.29 , pp. 134-143
- Hamilton, P.L.¹ Arya, D.P.²

62
- 80055014243
- Xi, H.; Davis, E.; Ranjan, N.; Xue, L.; Hyde-Volpe, D.; Arya, D. P., Biochemistry 2011, 50, 9088-9113.
- (2011) Biochemistry , vol.50 , pp. 9088-9113
- Xi, H.¹ Davis, E.² Ranjan, N.³ Xue, L.⁴ Hyde-Volpe, D.⁵ Arya, D.P.⁶

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