메뉴 건너뛰기




Volumn 9, Issue 3, 2014, Pages

Molecular modeling study on the allosteric inhibition mechanism of HIV-1 integrase by LEDGF/p75 binding site inhibitors

Author keywords

[No Author keywords available]

Indexed keywords

BI 1001; CX 14442; ENZYME INHIBITOR; INTEGRASE; LENS EPITHELIUM DERIVED GROWTH FACTOR; PROTEIN P75; UNCLASSIFIED DRUG;

EID: 84897131414     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0090799     Document Type: Article
Times cited : (21)

References (67)
  • 1
    • 0020596551 scopus 로고
    • Isolation of a T-lymphotropic retrovirus from a patient at risk for acquired immune deficiency syndrome (AIDS)
    • Barre-Sinoussi F, Chermann J, Rey F, Nugeyre M, Chamaret S, et al. (1983) Isolation of a T-lymphotropic retrovirus from a patient at risk for acquired immune deficiency syndrome (AIDS). Science 220: 868-871. (Pubitemid 13080157)
    • (1983) Science , vol.220 , Issue.4599 , pp. 868-871
    • Barre, S.F.1    Chermann, J.C.2    Rey, F.3
  • 2
    • 0021281132 scopus 로고
    • Serological analysis of a subgroup of human T-lymphotropic retroviruses (HTLV-III) associated with AIDS
    • Schupbach J, Popovic M, Gilden R, Gonda M, Sarngadharan M, et al. (1984) Serological analysis of a subgroup of human T-lymphotropic retroviruses (HTLV-III) associated with AIDS. Science 224: 503-505. (Pubitemid 14134742)
    • (1984) Science , vol.224 , Issue.4648 , pp. 503-505
    • Schupbach, J.1    Popovic, M.2    Gilden, R.V.3
  • 3
    • 0028067324 scopus 로고
    • The core and carboxyl-terminal domains of the integrase protein of human immunodeficiency virus type 1 each contribute to nonspecific DNA binding
    • Engelman A, Hickman AB, Craigie R (1994) The core and carboxyl-terminal domains of the integrase protein of human immunodeficiency virus type 1 each contribute to nonspecific DNA binding. J Virol 68: 5911-5917. (Pubitemid 24258608)
    • (1994) Journal of Virology , vol.68 , Issue.9 , pp. 5911-5917
    • Engelman, A.1    Hickman, A.B.2    Craigie, R.3
  • 4
    • 0028790504 scopus 로고
    • Enhanced and coordinated processing of synapsed viral DNA ends by retroviral integrases in vitro
    • Kukolj G, Skalka AM (1995) Enhanced and coordinated processing of synapsed viral DNA ends by retroviral integrases in vitro. Genes Dev 9: 2556-2567.
    • (1995) Genes Dev , vol.9 , pp. 2556-2567
    • Kukolj, G.1    Skalka, A.M.2
  • 5
    • 0032601403 scopus 로고    scopus 로고
    • HIV-1 Integrase: Structural Organization, Conformational Changes, and Catalysis
    • Karl Rlaramorosch FAM, Aaron JS, editors. Academic Press
    • Asante-Appiah E, Skalka AM (1999) HIV-1 Integrase: Structural Organization, Conformational Changes, and Catalysis. In: Karl Rlaramorosch FAM, Aaron JS, editors. Advances in Virus Research: Academic Press. pp. 351-369.
    • (1999) Advances in Virus Research , pp. 351-369
    • Asante-Appiah, E.1    Skalka, A.M.2
  • 6
    • 52449097240 scopus 로고    scopus 로고
    • Discovery of Raltegravir, a Potent, Selective Orally Bioavailable HIV-Integrase Inhibitor for the Treatment of HIV-AIDS Infection
    • Summa V, Petrocchi A, Bonelli F, Crescenzi B, Donghi M, et al. (2008) Discovery of Raltegravir, a Potent, Selective Orally Bioavailable HIV-Integrase Inhibitor for the Treatment of HIV-AIDS Infection. J Med Chem 51: 5843-5855.
    • (2008) J Med Chem , vol.51 , pp. 5843-5855
    • Summa, V.1    Petrocchi, A.2    Bonelli, F.3    Crescenzi, B.4    Donghi, M.5
  • 9
    • 70350154011 scopus 로고    scopus 로고
    • Integrase inhibitors in salvage therapy regimens for HIV-1 infection
    • Koelsch KK, Cooper DA (2009) Integrase inhibitors in salvage therapy regimens for HIV-1 infection. Curr Opin HIV AIDS 4: 518-523.
    • (2009) Curr Opin HIV AIDS , vol.4 , pp. 518-523
    • Koelsch, K.K.1    Cooper, D.A.2
  • 10
    • 84862285709 scopus 로고    scopus 로고
    • The elvitegravir Quad pill: The first once-daily dual-target anti-HIV tablet
    • Marchand C (2012) The elvitegravir Quad pill: the first once-daily dual-target anti-HIV tablet. Expert Opin Investig Drugs 21: 901-904.
    • (2012) Expert Opin Investig Drugs , vol.21 , pp. 901-904
    • Marchand, C.1
  • 11
    • 84897135929 scopus 로고    scopus 로고
    • Available: Accessed 05 November 2013
    • U.S. Food and Drug Administration (2013) FDA approves new drug to treat HIV infection. Available: http://www.fda.gov/NewsEvents/Newsroom/ PressAnnouncements/ucm364744.htm. Accessed 05 November 2013.
    • (2013) FDA Approves New Drug to Treat HIV Infection
  • 14
    • 79251545504 scopus 로고    scopus 로고
    • Allosteric Inhibitor Development Targeting HIV-1 Integrase
    • Al-Mawsawi LQ, Neamati N (2011) Allosteric Inhibitor Development Targeting HIV-1 Integrase. ChemMedChem 6: 228-241.
    • (2011) ChemMedChem , vol.6 , pp. 228-241
    • Al-Mawsawi, L.Q.1    Neamati, N.2
  • 15
    • 84870670336 scopus 로고    scopus 로고
    • The LEDGF/p75 integrase interaction, a novel target for anti-HIV therapy
    • Christ F, Debyser Z (2013) The LEDGF/p75 integrase interaction, a novel target for anti-HIV therapy. Virology 435: 102-109.
    • (2013) Virology , vol.435 , pp. 102-109
    • Christ, F.1    Debyser, Z.2
  • 16
    • 77957101377 scopus 로고    scopus 로고
    • The Interaction Between Lentiviral Integrase and LEDGF: Structural and Functional Insights
    • Hare S, Cherepanov P (2009) The Interaction Between Lentiviral Integrase and LEDGF: Structural and Functional Insights. Viruses 1: 780-801.
    • (2009) Viruses , vol.1 , pp. 780-801
    • Hare, S.1    Cherepanov, P.2
  • 18
    • 57449117704 scopus 로고    scopus 로고
    • In search of small molecules blocking interactions between HIV proteins and intracellular cofactors
    • Busschots K, De Rijck J, Christ F, Debyser Z (2009) In search of small molecules blocking interactions between HIV proteins and intracellular cofactors. Mol Biosyst 5: 21-31.
    • (2009) Mol Biosyst , vol.5 , pp. 21-31
    • Busschots, K.1    De Rijck, J.2    Christ, F.3    Debyser, Z.4
  • 19
    • 77952553431 scopus 로고    scopus 로고
    • Rational design of small-molecule inhibitors of the LEDGF/p75-integrase interaction and HIV replication
    • Christ F, Voet A, Marchand A, Nicolet S, Desimmie BA, et al. (2010) Rational design of small-molecule inhibitors of the LEDGF/p75-integrase interaction and HIV replication. Nat Chem Biol 6: 442-448.
    • (2010) Nat Chem Biol , vol.6 , pp. 442-448
    • Christ, F.1    Voet, A.2    Marchand, A.3    Nicolet, S.4    Desimmie, B.A.5
  • 20
    • 70349331248 scopus 로고    scopus 로고
    • An Allosteric Mechanism for Inhibiting HIV-1 Integrase with a Small Molecule
    • Kessl JJ, Eidahl JO, Shkriabai N, Zhao ZJ, McKee CJ, et al. (2009) An Allosteric Mechanism for Inhibiting HIV-1 Integrase with a Small Molecule. Mol Pharmacol 76: 824-832.
    • (2009) Mol Pharmacol , vol.76 , pp. 824-832
    • Kessl, J.J.1    Eidahl, J.O.2    Shkriabai, N.3    Zhao, Z.J.4    McKee, C.J.5
  • 21
    • 84864387134 scopus 로고    scopus 로고
    • Small-Molecule Inhibitors of the LEDGF/p75 Binding Site of Integrase Block HIV Replication and Modulate Integrase Multimerization
    • Christ F, Shaw S, Demeulemeester J, Desimmie BA, Marchand A, et al. (2012) Small-Molecule Inhibitors of the LEDGF/p75 Binding Site of Integrase Block HIV Replication and Modulate Integrase Multimerization. Antimicrob Agents Chemother 56: 4365-4374.
    • (2012) Antimicrob Agents Chemother , vol.56 , pp. 4365-4374
    • Christ, F.1    Shaw, S.2    Demeulemeester, J.3    Desimmie, B.A.4    Marchand, A.5
  • 22
    • 84860871902 scopus 로고    scopus 로고
    • Multimode, Cooperative Mechanism of Action of Allosteric HIV-1 Integrase Inhibitors
    • Kessl JJ, Jena N, Koh Y, Taskent-Sezgin H, Slaughter A, et al. (2012) Multimode, Cooperative Mechanism of Action of Allosteric HIV-1 Integrase Inhibitors. J Biol Chem 287: 16801-16811.
    • (2012) J Biol Chem , vol.287 , pp. 16801-16811
    • Kessl, J.J.1    Jena, N.2    Koh, Y.3    Taskent-Sezgin, H.4    Slaughter, A.5
  • 23
    • 84862271587 scopus 로고    scopus 로고
    • New Class of HIV-1 Integrase (IN) Inhibitors with a Dual Mode of Action
    • Tsiang M, Jones GS, Niedziela-Majka A, Kan E, Lansdon EB, et al. (2012) New Class of HIV-1 Integrase (IN) Inhibitors with a Dual Mode of Action. J Biol Chem 287: 21189-21203.
    • (2012) J Biol Chem , vol.287 , pp. 21189-21203
    • Tsiang, M.1    Jones, G.S.2    Niedziela-Majka, A.3    Kan, E.4    Lansdon, E.B.5
  • 24
    • 84869988552 scopus 로고    scopus 로고
    • Discovery of Inhibitors To Block Interactions of HIV-1 Integrase with Human LEDGF/p75 via Structure-Based Virtual Screening and Bioassays
    • Hu G, Li X, Zhang X, Li Y, Ma L, et al. (2012) Discovery of Inhibitors To Block Interactions of HIV-1 Integrase with Human LEDGF/p75 via Structure-Based Virtual Screening and Bioassays. J Med Chem 55: 10108-10117.
    • (2012) J Med Chem , vol.55 , pp. 10108-10117
    • Hu, G.1    Li, X.2    Zhang, X.3    Li, Y.4    Ma, L.5
  • 25
    • 77957242469 scopus 로고    scopus 로고
    • Computational Modeling Toward Understanding Agonist Binding on Dopamine 3
    • Zhao Y, Lu X, Yang C-y, Huang Z, Fu W, et al. (2010) Computational Modeling Toward Understanding Agonist Binding on Dopamine 3. J Chem Inf Model 50: 1633-1643.
    • (2010) J Chem Inf Model , vol.50 , pp. 1633-1643
    • Zhao, Y.1    Lu, X.2    Yang, C.-Y.3    Huang, Z.4    Fu, W.5
  • 26
    • 39049111013 scopus 로고    scopus 로고
    • Characterization of Domain- Peptide Interaction Interface: A Case Study on the Amphiphysin-1 SH3 Domain
    • Hou T, Zhang W, Case DA, Wang W (2008) Characterization of Domain- Peptide Interaction Interface: A Case Study on the Amphiphysin-1 SH3 Domain. J Mol Biol 376: 1201-1214.
    • (2008) J Mol Biol , vol.376 , pp. 1201-1214
    • Hou, T.1    Zhang, W.2    Case, D.A.3    Wang, W.4
  • 27
    • 33747200808 scopus 로고    scopus 로고
    • Combining docking and molecular dynamic simulations in drug design
    • DOI 10.1002/med.20067
    • Alonso H, Bliznyuk AA, Gready JE (2006) Combining docking and molecular dynamic simulations in drug design. Med Res Rev 26: 531-568. (Pubitemid 44230412)
    • (2006) Medicinal Research Reviews , vol.26 , Issue.5 , pp. 531-568
    • Alonso, H.1    Bliznyuk, A.A.2    Gready, J.E.3
  • 28
    • 84865724768 scopus 로고    scopus 로고
    • Understanding the structural and energetic basis of inhibitor and substrate bound to the full-length NS3/4A: Insights from molecular dynamics simulation, binding free energy calculation and network analysis
    • Xue W, Wang M, Jin X, Liu H, Yao X (2012) Understanding the structural and energetic basis of inhibitor and substrate bound to the full-length NS3/4A: insights from molecular dynamics simulation, binding free energy calculation and network analysis. Mol Biosyst 8: 2753-2765.
    • (2012) Mol Biosyst , vol.8 , pp. 2753-2765
    • Xue, W.1    Wang, M.2    Jin, X.3    Liu, H.4    Yao, X.5
  • 29
    • 77949868550 scopus 로고    scopus 로고
    • Structure-Based Design of Peptides against G3BP with Cytotoxicity on Tumor Cells
    • Cui W, Wei Z, Chen Q, Cheng Y, Geng L, et al. (2010) Structure-Based Design of Peptides against G3BP with Cytotoxicity on Tumor Cells. J Chem Inf Model 50: 380-387.
    • (2010) J Chem Inf Model , vol.50 , pp. 380-387
    • Cui, W.1    Wei, Z.2    Chen, Q.3    Cheng, Y.4    Geng, L.5
  • 30
    • 76249105085 scopus 로고    scopus 로고
    • Molecular Basis of the Interaction for an Essential Subunit PA2PB1 in Influenza Virus RNA Polymerase: Insights from Molecular Dynamics Simulation and Free Energy Calculation
    • Liu H, Yao X (2009) Molecular Basis of the Interaction for an Essential Subunit PA2PB1 in Influenza Virus RNA Polymerase: Insights from Molecular Dynamics Simulation and Free Energy Calculation. Mol Pharm 7: 75-85.
    • (2009) Mol Pharm , vol.7 , pp. 75-85
    • Liu, H.1    Yao, X.2
  • 31
    • 84555177612 scopus 로고    scopus 로고
    • Molecular Dynamics Simulation and Free Energy Calculation Studies of the Binding Mechanism of Allosteric Inhibitors with p38a MAP Kinase
    • Yang Y, Shen Y, Liu H, Yao X (2011) Molecular Dynamics Simulation and Free Energy Calculation Studies of the Binding Mechanism of Allosteric Inhibitors with p38a MAP Kinase. J Chem Inf Model 51: 3235-3246.
    • (2011) J Chem Inf Model , vol.51 , pp. 3235-3246
    • Yang, Y.1    Shen, Y.2    Liu, H.3    Yao, X.4
  • 32
    • 84863700202 scopus 로고    scopus 로고
    • Understanding the molecular basis of MK2-p38[small alpha] signaling complex assembly: Insights into protein-protein interaction by molecular dynamics and free energy studies
    • Yang Y, Liu H, Yao X (2012) Understanding the molecular basis of MK2-p38[small alpha] signaling complex assembly: insights into protein-protein interaction by molecular dynamics and free energy studies. Mol Biosys 8: 2106-2118.
    • (2012) Mol Biosys , vol.8 , pp. 2106-2118
    • Yang, Y.1    Liu, H.2    Yao, X.3
  • 33
    • 84864672616 scopus 로고    scopus 로고
    • Understanding microscopic binding of macrophage migration inhibitory factor with phenolic hydrazones by molecular docking, molecular dynamics simulations and free energy calculations
    • Xu L, Li Y, Li L, Zhou S, Hou T (2012) Understanding microscopic binding of macrophage migration inhibitory factor with phenolic hydrazones by molecular docking, molecular dynamics simulations and free energy calculations. Mol Biosys 8: 2260-2273.
    • (2012) Mol Biosys , vol.8 , pp. 2260-2273
    • Xu, L.1    Li, Y.2    Li, L.3    Zhou, S.4    Hou, T.5
  • 34
    • 84870607167 scopus 로고    scopus 로고
    • Identification of old drugs as potential inhibitors of HIV-1 integrase-human LEDGF/p75 interaction via molecular docking
    • Hu G, Li X, Sun X, Lu W, Liu G, et al. (2012) Identification of old drugs as potential inhibitors of HIV-1 integrase-human LEDGF/p75 interaction via molecular docking. J Mol Model 18: 4995-5003.
    • (2012) J Mol Model , vol.18 , pp. 4995-5003
    • Hu, G.1    Li, X.2    Sun, X.3    Lu, W.4    Liu, G.5
  • 35
    • 84871595039 scopus 로고    scopus 로고
    • Insight into the Fundamental Interactions between LEDGF Binding Site Inhibitors and Integrase Combining Docking and Molecular Dynamics Simulations
    • De Luca L, Morreale F, Chimirri A (2012) Insight into the Fundamental Interactions between LEDGF Binding Site Inhibitors and Integrase Combining Docking and Molecular Dynamics Simulations. J Chem Inf Model 52: 3245-3254.
    • (2012) J Chem Inf Model , vol.52 , pp. 3245-3254
    • De Luca, L.1    Morreale, F.2    Chimirri, A.3
  • 36
    • 84856226122 scopus 로고    scopus 로고
    • Molecular mechanism of HIV-1 integrase-vDNA interactions and strand transfer inhibitor action: A molecular modeling perspective
    • Xue W, Liu H, Yao X (2012) Molecular mechanism of HIV-1 integrase-vDNA interactions and strand transfer inhibitor action: A molecular modeling perspective. J Comput Chem 33: 527-536.
    • (2012) J Comput Chem , vol.33 , pp. 527-536
    • Xue, W.1    Liu, H.2    Yao, X.3
  • 37
    • 84863653124 scopus 로고    scopus 로고
    • Understanding the effect of drug-resistant mutations of HIV-1 intasome on raltegravir action through molecular modeling study
    • Xue W, Qi J, Yang Y, Jin X, Liu H, et al. (2012) Understanding the effect of drug-resistant mutations of HIV-1 intasome on raltegravir action through molecular modeling study. Mol Biosys 8: 2135-2144.
    • (2012) Mol Biosys , vol.8 , pp. 2135-2144
    • Xue, W.1    Qi, J.2    Yang, Y.3    Jin, X.4    Liu, H.5
  • 38
    • 84873025050 scopus 로고    scopus 로고
    • Exploring the Molecular Mechanism of Cross-Resistance to HIV-1 Integrase Strand Transfer Inhibitors by Molecular Dynamics Simulation and Residue Interaction Network Analysis
    • Xue W, Jin X, Ning L, Wang M, Liu H, et al. (2012) Exploring the Molecular Mechanism of Cross-Resistance to HIV-1 Integrase Strand Transfer Inhibitors by Molecular Dynamics Simulation and Residue Interaction Network Analysis. J Chem Inf Model 53: 210-222.
    • (2012) J Chem Inf Model , vol.53 , pp. 210-222
    • Xue, W.1    Jin, X.2    Ning, L.3    Wang, M.4    Liu, H.5
  • 39
    • 84897147831 scopus 로고    scopus 로고
    • version 2.1 Schrödinger, LLC, New York, NY
    • Prime version 2.1 (2009) Schrödinger, LLC, New York, NY.
    • (2009) Prime
  • 41
    • 84897125121 scopus 로고    scopus 로고
    • version 9.0 Schrödinger, LLC, New York, NY
    • Maestro, version 9.0 (2009) Schrödinger, LLC, New York, NY.
    • (2009) Maestro
  • 42
    • 84897130059 scopus 로고    scopus 로고
    • version 2.3 Schrödinger, LLC, New York, NY
    • LigPrep, version 2.3 (2009) Schrödinger, LLC, New York, NY.
    • (2009) LigPrep
  • 43
    • 5544242529 scopus 로고    scopus 로고
    • MMFF VI. MMFF94s option for energy minimization studies
    • Halgren TA (1999) MMFF VI. MMFF94s option for energy minimization studies. J Comput Chem 20: 720-729.
    • (1999) J Comput Chem , vol.20 , pp. 720-729
    • Halgren, T.A.1
  • 44
    • 84897127144 scopus 로고    scopus 로고
    • version 2.0 Schrödinger, LLC, New York, NY
    • Epik, version 2.0 (2009) Schrödinger, LLC, New York, NY.
    • (2009) Epik
  • 45
    • 0035913529 scopus 로고    scopus 로고
    • Evaluation and reparametrization of the OPLS-AA force field for proteins via comparison with accurate quantum chemical calculations on peptides
    • DOI 10.1021/jp003919d
    • Kaminski GA, Friesner RA, Tirado-Rives J, Jorgensen WL (2001) Evaluation and Reparametrization of the OPLS-AA Force Field for Proteins via Comparison with Accurate Quantum Chemical Calculations on Peptides. J Phys Chem B 105: 6474-6487. (Pubitemid 35339015)
    • (2001) Journal of Physical Chemistry B , vol.105 , Issue.28 , pp. 6474-6487
    • Kaminski, G.A.1    Friesner, R.A.2    Tirado-Rives, J.3    Jorgensen, W.L.4
  • 46
    • 84897126300 scopus 로고    scopus 로고
    • version 5.5 Schrödinger, LLC, New York, NY
    • Glide, version 5.5 (2009) Schrödinger, LLC, New York, NY.
    • (2009) Glide
  • 48
    • 0242663237 scopus 로고    scopus 로고
    • A point-charge force field for molecular mechanics simulations of proteins based on condensedphase quantum mechanical calculations
    • Duan Y, Wu C, Chowdhury S, Lee MC, Xiong G, et al. (2003) A point-charge force field for molecular mechanics simulations of proteins based on condensedphase quantum mechanical calculations. J Comput Chem 24: 1999-2012.
    • (2003) J Comput Chem , vol.24 , pp. 1999-2012
    • Duan, Y.1    Wu, C.2    Chowdhury, S.3    Lee, M.C.4    Xiong, G.5
  • 51
    • 3042524904 scopus 로고
    • A well-behaved electrostatic potential based method using charge restraints for deriving atomic charges: The RESP model
    • Bayly CI, Cieplak P, Cornell W, Kollman PA (1993) A well-behaved electrostatic potential based method using charge restraints for deriving atomic charges: the RESP model. J Phy Chem 97: 10269-10280.
    • (1993) J Phy Chem , vol.97 , pp. 10269-10280
    • Bayly, C.I.1    Cieplak, P.2    Cornell, W.3    Kollman, P.A.4
  • 52
    • 84986516411 scopus 로고
    • Application of the multimolecule and multiconformational RESP methodology to biopolymers: Charge derivation for DNA, RNA, and proteins
    • Cieplak P, Cornell WD, Bayly C, Kollman PA (1995) Application of the multimolecule and multiconformational RESP methodology to biopolymers: Charge derivation for DNA, RNA, and proteins. J Comput Chem 16: 1357-1377.
    • (1995) J Comput Chem , vol.16 , pp. 1357-1377
    • Cieplak, P.1    Cornell, W.D.2    Bayly, C.3    Kollman, P.A.4
  • 53
    • 0000730887 scopus 로고    scopus 로고
    • Application of the RESP methodology in the parametrization of organic solvents
    • Fox T, Kollman PA (1998) Application of the RESP Methodology in the Parametrization of Organic Solvents. J Phy Chem B 102: 8070-8079. (Pubitemid 128578425)
    • (1998) Journal of Physical Chemistry B , vol.102 , Issue.41 , pp. 8070-8079
    • Fox, T.1    Kollman, P.A.2
  • 55
    • 33846823909 scopus 로고
    • Particle mesh Ewald: An N?Log(N) method for Ewald sums in large systems
    • Darden T, York D, Pedersen L (1993) Particle mesh Ewald: An N?log(N) method for Ewald sums in large systems. J Chem Phys 98: 10089-10092.
    • (1993) J Chem Phys , vol.98 , pp. 10089-10092
    • Darden, T.1    York, D.2    Pedersen, L.3
  • 56
    • 33646940952 scopus 로고
    • Numerical integration of the cartesian equations of motion of a system with constraints: Molecular dynamics of n-alkanes
    • Ryckaert J-P, Ciccotti G, Berendsen HJC (1977) Numerical integration of the cartesian equations of motion of a system with constraints: molecular dynamics of n-alkanes. J Comput Phys 23: 327-341.
    • (1977) J Comput Phys , vol.23 , pp. 327-341
    • Ryckaert, J.-P.1    Ciccotti, G.2    Berendsen, H.J.C.3
  • 58
    • 0035913537 scopus 로고    scopus 로고
    • Extending the applicability of the nonlinear Poisson-Boltzmann equation: Multiple dielectric constants and multivalent ions
    • DOI 10.1021/jp010454y
    • Rocchia W, Alexov E, Honig B (2001) Extending the Applicability of the Nonlinear Poisson2Boltzmann Equation: Multiple Dielectric Constants and Multivalent Ions. J Phy Chem B 105: 6507-6514. (Pubitemid 35339019)
    • (2001) Journal of Physical Chemistry B , vol.105 , Issue.28 , pp. 6507-6514
    • Rocchia, W.1    Alexov, E.2    Honig, B.3
  • 59
    • 32844457567 scopus 로고
    • Accurate Calculation of Hydration Free Energies Using Macroscopic Solvent Models
    • Sitkoff D, Sharp KA, Honig B (1994) Accurate Calculation of Hydration Free Energies Using Macroscopic Solvent Models. J Phy Chem 98: 1978-1988.
    • (1994) J Phy Chem , vol.98 , pp. 1978-1988
    • Sitkoff, D.1    Sharp, K.A.2    Honig, B.3
  • 60
    • 0029633186 scopus 로고
    • AMBER, a package of computer programs for applying molecular mechanics, normal mode analysis, molecular dynamics and free energy calculations to simulate the structural and energetic properties of molecules
    • Pearlman DA, Case DA, Caldwell JW, Ross WS, Cheatham Iii TE, et al. (1995) AMBER, a package of computer programs for applying molecular mechanics, normal mode analysis, molecular dynamics and free energy calculations to simulate the structural and energetic properties of molecules. Comput Phys Commun 91: 1-41.
    • (1995) Comput Phys Commun , vol.91 , pp. 1-41
    • Pearlman, D.A.1    Case, D.A.2    Caldwell, J.W.3    Ross, W.S.4    Cheatham III, T.E.5
  • 61
    • 1842479952 scopus 로고    scopus 로고
    • Exploring Protein Native States and Large-Scale Conformational Changes with a Modified Generalized Born Model
    • DOI 10.1002/prot.20033
    • Onufriev A, Bashford D, Case DA (2004) Exploring protein native states and large-scale conformational changes with a modified generalized born model. Proteins: Struct Funct Bioinform 55: 383-394. (Pubitemid 38437495)
    • (2004) Proteins: Structure, Function and Genetics , vol.55 , Issue.2 , pp. 383-394
    • Onufriev, A.1    Bashford, D.2    Case, D.A.3
  • 62
    • 78349299377 scopus 로고    scopus 로고
    • Computational studies of the interaction between the HIV-1 integrase tetramer and the cofactor LEDGF/p75: Insights from molecular dynamics simulations and the Informational spectrum method
    • Tintori C, Veljkovic N, Veljkovic V, Botta M (2010) Computational studies of the interaction between the HIV-1 integrase tetramer and the cofactor LEDGF/p75: Insights from molecular dynamics simulations and the Informational spectrum method. Proteins: Struct Funct Bioinform 78: 3396-3408.
    • (2010) Proteins: Struct Funct Bioinform , vol.78 , pp. 3396-3408
    • Tintori, C.1    Veljkovic, N.2    Veljkovic, V.3    Botta, M.4
  • 63
    • 0033603053 scopus 로고    scopus 로고
    • All three residues of the Tn10 transposase DDE catalytic triad function in divalent metal ion binding
    • DOI 10.1006/jmbi.1999.2837
    • Allingham JS, Pribil PA, Haniford DB (1999) All three residues of the Tn10 transposase DDE catalytic triad function in divalent metal ion binding. J Mol Biol 289: 1195-1206. (Pubitemid 29296699)
    • (1999) Journal of Molecular Biology , vol.289 , Issue.5 , pp. 1195-1206
    • Allingham, J.S.1    Pribil, P.A.2    Haniford, D.B.3
  • 64
    • 0033551443 scopus 로고    scopus 로고
    • The Mobility of an HIV-1 Integrase Active Site Loop Is Correlated with Catalytic Activity
    • Greenwald J, Le V, Butler SL, Bushman FD, Choe S (1999) The Mobility of an HIV-1 Integrase Active Site Loop Is Correlated with Catalytic Activity. Biochemistry 38: 8892-8898.
    • (1999) Biochemistry , vol.38 , pp. 8892-8898
    • Greenwald, J.1    Le, V.2    Butler, S.L.3    Bushman, F.D.4    Choe, S.5
  • 67
    • 50149096422 scopus 로고    scopus 로고
    • D77, one benzoic acid derivative, functions as a novel anti-HIV-1 inhibitor targeting the interaction between integrase and cellular LEDGF/p75
    • Du L, Zhao Y, Chen J, Yang L, Zheng Y, et al. (2008) D77, one benzoic acid derivative, functions as a novel anti-HIV-1 inhibitor targeting the interaction between integrase and cellular LEDGF/p75. Biochem Biophys Res Commun 375: 139-144.
    • (2008) Biochem Biophys Res Commun , vol.375 , pp. 139-144
    • Du, L.1    Zhao, Y.2    Chen, J.3    Yang, L.4    Zheng, Y.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.